Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47623 * 2 1 4 4 C 1.50704 * 109.46940 * 239.99756 * 2 1 3 5 5 H 1.07998 * 119.99938 * 240.00116 * 4 2 1 6 6 C 1.37870 * 119.99958 * 60.00182 * 4 2 1 7 7 N 1.31517 * 120.00316 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46875 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47388 * 119.99695 * 8 6 4 11 11 H 1.48495 * 109.47353 * 240.00217 * 8 6 4 12 12 N 1.46500 * 109.46852 * 120.00111 * 2 1 3 13 13 C 1.34782 * 119.99944 * 274.99198 * 12 2 1 14 14 O 1.21280 * 119.99889 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99985 * 179.72504 * 13 12 2 16 16 H 1.08997 * 115.55179 * 3.21463 * 15 13 12 17 17 C 1.52991 * 117.50041 * 217.50356 * 15 13 12 18 18 H 1.09003 * 117.50480 * 145.02328 * 17 15 13 19 19 C 1.50702 * 117.49897 * 0.02562 * 17 15 13 20 20 O 1.20828 * 119.99939 * 240.81966 * 19 17 15 21 21 O 1.34223 * 120.00117 * 60.81591 * 19 17 15 22 22 C 1.52999 * 117.49779 * 148.87912 * 15 13 12 23 23 C 1.53003 * 117.50276 * 214.98028 * 22 15 13 24 24 C 1.53002 * 117.49695 * 359.97438 * 22 15 13 25 25 H 1.09000 * 109.46684 * 300.00495 * 1 2 3 26 26 H 1.09004 * 109.46918 * 59.99621 * 1 2 3 27 27 H 1.09002 * 109.47498 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00291 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00031 * 95.00203 * 12 2 1 30 30 H 0.96702 * 117.00114 * 180.02562 * 21 19 17 31 31 H 1.08997 * 109.46407 * 60.00369 * 23 22 15 32 32 H 1.09004 * 109.47012 * 180.02562 * 23 22 15 33 33 H 1.08999 * 109.46832 * 300.00269 * 23 22 15 34 34 H 1.08997 * 109.47570 * 55.57698 * 24 22 15 35 35 H 1.09006 * 109.47187 * 175.58316 * 24 22 15 36 36 H 1.09003 * 109.47031 * 295.57587 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1659 -1.5869 -4.8160 11 1 3.1465 -0.1877 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1584 2.4117 15 6 2.6435 -0.7302 3.5891 16 1 2.9286 -1.7725 3.4470 17 6 2.0130 -0.3462 4.9292 18 1 1.8829 -1.1361 5.6690 19 6 0.9426 0.7146 4.9161 20 8 1.1024 1.7417 5.5321 21 8 -0.1881 0.5185 4.2200 22 6 3.4434 0.0888 4.6042 23 6 4.5818 -0.6183 5.3425 24 6 3.6786 1.5677 4.2904 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7087 1.1611 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 -0.8454 1.2275 4.2413 31 1 5.3150 -0.9776 4.6205 32 1 5.0595 0.0812 6.0287 33 1 4.1815 -1.4620 5.9045 34 1 2.7208 2.0606 4.1237 35 1 4.1894 2.0404 5.1294 36 1 4.2933 1.6558 3.3946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -111.473359 kcal Electronic energy + Delta-G solvation = -19715.184737 eV Core-core repulsion = 16586.040255 eV Total energy + Delta-G solvation = -3129.144481 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78035 -38.88653 -37.05844 -35.70034 -34.67005 -32.38314 -29.93489 -28.85945 -27.40899 -25.39597 -25.17439 -22.58286 -20.52751 -19.43672 -18.90368 -17.82492 -17.15651 -16.31731 -15.73310 -15.33573 -15.03401 -14.43263 -14.08880 -13.82155 -13.59065 -13.18312 -12.88342 -12.51974 -12.40532 -12.14494 -11.89403 -11.68839 -11.43180 -11.11353 -11.05507 -10.92973 -10.76532 -10.42321 -10.29630 -10.24170 -10.12179 -9.82639 -9.03821 -8.97272 -8.56109 -7.89492 -6.13159 -4.22399 2.41785 2.83882 3.22901 3.23880 3.30862 3.33409 3.89069 4.01124 4.34519 4.57621 4.73194 4.90729 5.03997 5.19399 5.37053 5.48652 5.57927 5.60704 5.80115 5.88555 5.99107 6.12281 6.21877 6.66347 6.83739 6.85649 7.00453 7.16326 7.46846 7.56446 7.69282 7.91794 8.15011 8.18696 8.66257 8.77421 9.11998 9.45361 10.92817 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.005657 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.465438 B = 4948.089263 C = 5414.036100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.532 3.468 14 O -0.547 6.547 15 C -0.164 4.164 16 H 0.126 0.874 17 C -0.134 4.134 18 H 0.145 0.855 19 C 0.526 3.474 20 O -0.514 6.514 21 O -0.503 6.503 22 C -0.061 4.061 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.016 0.984 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.408 0.592 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -5.153 13.594 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.316 3.684 14 O -0.427 6.427 15 C -0.186 4.186 16 H 0.144 0.856 17 C -0.153 4.153 18 H 0.162 0.838 19 C 0.369 3.631 20 O -0.403 6.403 21 O -0.314 6.314 22 C -0.062 4.062 23 C -0.173 4.173 24 C -0.181 4.181 25 H 0.035 0.965 26 H 0.107 0.893 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.089 -4.222 13.583 14.556 hybrid contribution -0.130 -0.664 -0.945 1.163 sum 2.960 -4.886 12.638 13.869 Atomic orbital electron populations 1.22049 0.98332 0.99097 1.00860 1.18749 0.91111 0.93898 0.79843 0.93412 1.21263 1.32361 1.13197 0.90354 0.92046 1.24888 0.94816 0.94960 0.99072 1.69914 1.35917 1.22504 1.23763 0.86397 0.78603 0.79523 0.82588 1.19745 1.20863 1.20888 1.46421 1.64509 1.13418 1.10338 1.19237 0.78493 0.86909 0.83744 1.90630 1.51501 1.15803 1.84719 1.22769 1.04542 1.01517 0.89746 0.85567 1.22023 0.92805 1.00089 1.00416 0.83793 1.21876 0.81118 0.86008 0.74141 1.90663 1.78855 1.28040 1.42735 1.84519 1.28927 1.50497 1.67445 1.21634 0.89637 0.97292 0.97656 1.21427 0.96321 0.99814 0.99722 1.21583 1.04611 0.91231 1.00707 0.96460 0.89316 0.95545 0.92638 0.77923 0.73326 0.91205 0.91330 0.92031 0.89230 0.92533 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.71 2.56 -69.08 -0.18 6.53 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.70 -14.42 5.07 -54.93 -0.28 -14.69 16 13 C 0.53 10.37 6.73 -10.98 -0.07 10.30 16 14 O -0.55 -12.44 11.78 -5.66 -0.07 -12.51 16 15 C -0.16 -2.36 5.91 -91.78 -0.54 -2.90 16 16 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 17 C -0.13 -1.80 5.88 -91.78 -0.54 -2.34 16 18 H 0.14 1.41 8.05 -51.93 -0.42 1.00 16 19 C 0.53 8.56 5.25 36.01 0.19 8.75 16 20 O -0.51 -9.45 16.05 -18.75 -0.30 -9.76 16 21 O -0.50 -7.81 12.57 -43.79 -0.55 -8.36 16 22 C -0.06 -0.82 2.70 -154.51 -0.42 -1.23 16 23 C -0.12 -1.09 9.85 37.16 0.37 -0.72 16 24 C -0.12 -1.97 7.85 37.16 0.29 -1.68 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 30 H 0.41 4.86 9.10 45.56 0.41 5.27 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.60 7.97 -51.93 -0.41 0.18 16 33 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 34 H 0.09 1.72 4.15 -51.93 -0.22 1.51 16 35 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -32.51 301.79 -6.17 -38.67 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.17 Total: 10.04 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.95 Total: 0.77 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.94 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.92 Total: -30.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.51 -6.17 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.799 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds