Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47623 * 2 1 4 4 C 1.50704 * 109.46940 * 239.99756 * 2 1 3 5 5 H 1.07998 * 119.99938 * 240.00116 * 4 2 1 6 6 C 1.37870 * 119.99958 * 60.00182 * 4 2 1 7 7 N 1.31517 * 120.00316 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46875 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47388 * 119.99695 * 8 6 4 11 11 H 1.48495 * 109.47353 * 240.00217 * 8 6 4 12 12 N 1.46500 * 109.46852 * 120.00111 * 2 1 3 13 13 C 1.34782 * 119.99944 * 274.99198 * 12 2 1 14 14 O 1.21280 * 119.99889 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99985 * 179.72504 * 13 12 2 16 16 H 1.08997 * 115.55179 * 3.21463 * 15 13 12 17 17 C 1.52991 * 117.50041 * 217.50356 * 15 13 12 18 18 H 1.09003 * 117.50480 * 145.02328 * 17 15 13 19 19 C 1.50702 * 117.49897 * 0.02562 * 17 15 13 20 20 O 1.20828 * 119.99939 * 240.81966 * 19 17 15 21 21 O 1.34223 * 120.00117 * 60.81591 * 19 17 15 22 22 C 1.52999 * 117.49779 * 148.87912 * 15 13 12 23 23 C 1.53003 * 117.50276 * 214.98028 * 22 15 13 24 24 C 1.53002 * 117.49695 * 359.97438 * 22 15 13 25 25 H 1.09000 * 109.46684 * 300.00495 * 1 2 3 26 26 H 1.09004 * 109.46918 * 59.99621 * 1 2 3 27 27 H 1.09002 * 109.47498 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00291 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00031 * 95.00203 * 12 2 1 30 30 H 0.96702 * 117.00114 * 180.02562 * 21 19 17 31 31 H 1.08997 * 109.46407 * 60.00369 * 23 22 15 32 32 H 1.09004 * 109.47012 * 180.02562 * 23 22 15 33 33 H 1.08999 * 109.46832 * 300.00269 * 23 22 15 34 34 H 1.08997 * 109.47570 * 55.57698 * 24 22 15 35 35 H 1.09006 * 109.47187 * 175.58316 * 24 22 15 36 36 H 1.09003 * 109.47031 * 295.57587 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1659 -1.5869 -4.8160 11 1 3.1465 -0.1877 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1584 2.4117 15 6 2.6435 -0.7302 3.5891 16 1 2.9286 -1.7725 3.4470 17 6 2.0130 -0.3462 4.9292 18 1 1.8829 -1.1361 5.6690 19 6 0.9426 0.7146 4.9161 20 8 1.1024 1.7417 5.5321 21 8 -0.1881 0.5185 4.2200 22 6 3.4434 0.0888 4.6042 23 6 4.5818 -0.6183 5.3425 24 6 3.6786 1.5677 4.2904 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7087 1.1611 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 -0.8454 1.2275 4.2413 31 1 5.3150 -0.9776 4.6205 32 1 5.0595 0.0812 6.0287 33 1 4.1815 -1.4620 5.9045 34 1 2.7208 2.0606 4.1237 35 1 4.1894 2.0404 5.1294 36 1 4.2933 1.6558 3.3946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -134.638914 kcal Electronic energy + Delta-G solvation = -19716.189270 eV Core-core repulsion = 16586.040255 eV Total energy + Delta-G solvation = -3130.149015 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03836 -40.32462 -38.39343 -37.00735 -36.49193 -34.30050 -31.32498 -30.41012 -28.42011 -27.34694 -26.59668 -24.03142 -22.19579 -21.01827 -20.10569 -19.15488 -18.59611 -17.94704 -17.20538 -16.86073 -16.70461 -15.81389 -15.75755 -15.08589 -14.70271 -14.56840 -14.37928 -14.17362 -13.64830 -13.57945 -13.21462 -13.02959 -12.94879 -12.82348 -12.73672 -12.51576 -12.27934 -12.21260 -12.08323 -11.63149 -11.28049 -11.07511 -10.92462 -10.64788 -10.50697 -9.68364 -8.17585 -6.35010 1.16715 1.44302 1.45291 1.56330 1.57514 2.07010 2.36478 2.59067 2.77539 3.13087 3.44595 3.61353 3.80676 4.08209 4.18791 4.43161 4.62765 4.67676 4.77398 4.81086 4.94585 4.96161 5.06277 5.08437 5.11996 5.30045 5.42629 5.48536 5.62872 5.66694 5.72283 5.92710 6.11469 6.73908 6.98971 7.00450 7.33234 7.60002 8.88883 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.005657 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.465438 B = 4948.089263 C = 5414.036100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.274 3.726 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.699 5.699 13 C 0.523 3.477 14 O -0.587 6.587 15 C -0.166 4.166 16 H 0.170 0.830 17 C -0.128 4.128 18 H 0.193 0.807 19 C 0.517 3.483 20 O -0.545 6.545 21 O -0.512 6.512 22 C -0.057 4.057 23 C -0.109 4.109 24 C -0.126 4.126 25 H 0.013 0.987 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.418 0.582 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -8.121 14.649 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.347 5.347 13 C 0.310 3.690 14 O -0.469 6.469 15 C -0.186 4.186 16 H 0.187 0.813 17 C -0.147 4.147 18 H 0.210 0.790 19 C 0.361 3.639 20 O -0.436 6.436 21 O -0.324 6.324 22 C -0.058 4.058 23 C -0.166 4.166 24 C -0.183 4.183 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.278 0.722 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.459 -7.227 14.662 16.943 hybrid contribution -0.595 0.385 -1.253 1.440 sum 3.864 -6.841 13.408 15.541 Atomic orbital electron populations 1.21847 0.98286 0.99298 0.99385 1.18293 0.91077 0.91717 0.81907 0.98676 1.21602 1.32400 1.13501 0.90812 0.90745 1.25817 0.94902 0.95593 1.02414 1.70068 1.37146 1.24080 1.24491 0.85289 0.78083 0.78545 0.78366 1.18165 1.20461 1.21106 1.46159 1.64889 1.14099 1.09564 1.20151 0.77378 0.86642 0.84812 1.90630 1.52822 1.17899 1.85508 1.22747 1.05503 1.03113 0.87281 0.81273 1.22382 0.91653 1.00108 1.00525 0.79046 1.22601 0.81554 0.86398 0.73341 1.90644 1.79408 1.29408 1.44102 1.84503 1.29373 1.51198 1.67307 1.21813 0.91188 0.95590 0.97229 1.21476 0.94810 1.00491 0.99814 1.21510 1.02347 0.93713 1.00722 0.96788 0.91869 0.94263 0.92631 0.75996 0.72157 0.90269 0.90667 0.89065 0.93024 0.90848 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 14.15 2.56 44.25 0.11 14.27 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.54 -28.69 8.73 25.60 0.22 -28.47 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 8 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.70 -28.47 5.07 -446.09 -2.26 -30.73 16 13 C 0.52 20.23 6.73 87.66 0.59 20.82 16 14 O -0.59 -27.69 11.78 7.70 0.09 -27.59 16 15 C -0.17 -4.26 5.91 -11.54 -0.07 -4.33 16 16 H 0.17 2.90 8.14 -2.39 -0.02 2.88 16 17 C -0.13 -3.04 5.88 -11.54 -0.07 -3.11 16 18 H 0.19 2.69 8.05 -2.39 -0.02 2.67 16 19 C 0.52 16.51 5.25 71.24 0.37 16.88 16 20 O -0.54 -20.26 16.05 21.96 0.35 -19.91 16 21 O -0.51 -15.91 12.57 -47.00 -0.59 -16.50 16 22 C -0.06 -1.37 2.70 -52.18 -0.14 -1.51 16 23 C -0.11 -1.54 9.85 71.98 0.71 -0.83 16 24 C -0.13 -3.97 7.85 71.98 0.57 -3.41 16 25 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 3.54 6.07 -2.38 -0.01 3.52 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.40 13.63 8.54 -92.71 -0.79 12.84 16 30 H 0.42 10.36 9.10 -74.06 -0.67 9.68 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.00 7.97 -2.38 -0.02 0.98 16 33 H 0.09 0.80 7.90 -2.39 -0.02 0.78 16 34 H 0.05 2.04 4.15 -2.39 -0.01 2.03 16 35 H 0.07 1.98 8.00 -2.38 -0.02 1.96 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -74.09 301.79 2.92 -71.17 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.35 Total: 26.96 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 3.41 Total: 5.53 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.02 Total: -83.52 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -0.15 Total: -64.00 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.09 2.92 -71.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.464 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds