Wall clock time and date at job start Mon Mar 30 2020 04:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47148 * 2 1 4 4 C 1.50699 * 109.47350 * 240.00077 * 2 1 3 5 5 H 1.08001 * 120.00123 * 239.99459 * 4 2 1 6 6 C 1.37876 * 120.00171 * 59.99836 * 4 2 1 7 7 N 1.31524 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00531 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47069 * 59.99660 * 8 6 4 10 10 H 1.48494 * 109.47455 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46816 * 300.00018 * 8 6 4 12 12 N 1.46498 * 109.47226 * 119.99879 * 2 1 3 13 13 C 1.34773 * 120.00185 * 274.99940 * 12 2 1 14 14 O 1.21281 * 120.00020 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00289 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.55946 * 325.70322 * 15 13 12 17 17 C 1.53000 * 117.49931 * 111.39120 * 15 13 12 18 18 H 1.09000 * 117.51883 * 0.02562 * 17 15 13 19 19 C 1.50698 * 117.50123 * 214.98064 * 17 15 13 20 20 O 1.20824 * 119.99769 * 27.39851 * 19 17 15 21 21 O 1.34230 * 120.00405 * 207.40185 * 19 17 15 22 22 C 1.53007 * 117.50020 * 180.02562 * 15 13 12 23 23 C 1.53002 * 117.49774 * 145.02085 * 22 15 13 24 24 C 1.52993 * 117.49700 * 359.97438 * 22 15 13 25 25 H 1.09004 * 109.47221 * 299.99863 * 1 2 3 26 26 H 1.09004 * 109.47426 * 60.00207 * 1 2 3 27 27 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99602 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00004 * 95.00474 * 12 2 1 30 30 H 0.96697 * 117.00124 * 179.97438 * 21 19 17 31 31 H 1.08993 * 109.46906 * 132.48909 * 23 22 15 32 32 H 1.09002 * 109.46751 * 252.48789 * 23 22 15 33 33 H 1.08998 * 109.47277 * 12.48839 * 23 22 15 34 34 H 1.09003 * 109.47585 * 299.98956 * 24 22 15 35 35 H 1.09001 * 109.47302 * 59.99251 * 24 22 15 36 36 H 1.09001 * 109.47081 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0078 10 1 1.8270 -0.4198 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5874 16 1 2.3535 -1.7731 3.6816 17 6 4.0316 -0.3359 4.1146 18 1 4.5769 0.4363 3.5720 19 6 4.8784 -1.4231 4.7243 20 8 4.7352 -2.5698 4.3716 21 8 5.7918 -1.1177 5.6593 22 6 2.7733 0.0896 4.8746 23 6 2.4714 -0.6215 6.1952 24 6 2.3773 1.5661 4.8138 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7087 1.1612 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 6.3108 -1.8488 6.0214 31 1 3.2623 -0.4054 6.9133 32 1 1.5177 -0.2688 6.5879 33 1 2.4189 -1.6969 6.0251 34 1 3.0032 2.0806 4.0847 35 1 1.3314 1.6499 4.5183 36 1 2.5147 2.0198 5.7954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:53 Heat of formation + Delta-G solvation = -114.244623 kcal Electronic energy + Delta-G solvation = -19224.527397 eV Core-core repulsion = 16095.262745 eV Total energy + Delta-G solvation = -3129.264652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85651 -39.28787 -37.07892 -36.14092 -34.68506 -32.38950 -29.95208 -28.77585 -27.51626 -25.71715 -25.22349 -22.40619 -20.48744 -19.57620 -19.21052 -18.16498 -17.24641 -16.43335 -15.85750 -15.52919 -15.16029 -14.34325 -14.20569 -13.76168 -13.56002 -13.43440 -12.90602 -12.60450 -12.39429 -12.28333 -12.02444 -11.70000 -11.59084 -11.43218 -11.09402 -10.96409 -10.76194 -10.72302 -10.33102 -10.24339 -10.20746 -9.89016 -9.05814 -8.88465 -8.53927 -7.91870 -6.12153 -4.21330 2.02693 2.59841 3.16986 3.26689 3.31572 3.33300 3.75684 4.00218 4.36054 4.53458 4.63459 4.91747 5.01578 5.20160 5.24558 5.49148 5.54985 5.56825 5.80040 5.86203 5.95924 6.08855 6.23175 6.32546 6.64759 6.82286 6.96724 7.14362 7.44441 7.55746 7.69652 7.77340 7.91044 8.14688 8.65856 8.77451 9.10105 9.46177 10.93748 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.005205 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.990925 B = 5377.776189 C = 6035.268375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.530 3.470 14 O -0.545 6.545 15 C -0.147 4.147 16 H 0.128 0.872 17 C -0.143 4.143 18 H 0.145 0.855 19 C 0.515 3.485 20 O -0.511 6.511 21 O -0.511 6.511 22 C -0.064 4.064 23 C -0.125 4.125 24 C -0.102 4.102 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.408 0.592 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -3.094 15.862 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.348 5.348 13 C 0.314 3.686 14 O -0.424 6.424 15 C -0.168 4.168 16 H 0.146 0.854 17 C -0.162 4.162 18 H 0.163 0.837 19 C 0.357 3.643 20 O -0.398 6.398 21 O -0.322 6.322 22 C -0.065 4.065 23 C -0.182 4.182 24 C -0.159 4.159 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.699 -2.113 15.436 16.273 hybrid contribution 0.894 -1.624 -0.814 2.024 sum 5.592 -3.737 14.622 16.095 Atomic orbital electron populations 1.22078 0.98378 0.99159 1.00925 1.18765 0.91072 0.93952 0.79894 0.93292 1.21193 1.32496 1.13274 0.90335 0.92101 1.24880 0.94782 0.94950 0.99031 1.69896 1.35818 1.22456 1.23985 0.86501 0.79174 0.79620 0.81766 1.20139 1.21115 1.20189 1.46533 1.64224 1.13809 1.10212 1.19276 0.78890 0.86867 0.83558 1.90661 1.51574 1.15597 1.84598 1.22753 0.96900 1.01585 0.95578 0.85378 1.21942 0.89330 0.99700 1.05229 0.83731 1.22326 0.77536 0.88568 0.75855 1.90732 1.67003 1.22275 1.59809 1.84542 1.49255 1.45255 1.53158 1.21703 0.95166 0.97745 0.91861 1.21494 1.02655 0.99589 0.94433 1.21378 1.03705 0.90193 1.00631 0.96594 0.89121 0.95466 0.92525 0.77683 0.73304 0.91379 0.90848 0.92333 0.91025 0.90476 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.15 0.34 -3.30 16 2 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 3 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.70 -14.77 5.07 -54.94 -0.28 -15.05 16 13 C 0.53 10.36 7.56 -10.99 -0.08 10.28 16 14 O -0.55 -12.08 12.77 5.56 0.07 -12.01 16 15 C -0.15 -2.23 5.35 -91.77 -0.49 -2.72 16 16 H 0.13 1.83 7.86 -51.93 -0.41 1.42 16 17 C -0.14 -1.93 5.64 -91.76 -0.52 -2.45 16 18 H 0.15 1.96 8.05 -51.93 -0.42 1.55 16 19 C 0.51 6.53 6.97 36.00 0.25 6.78 16 20 O -0.51 -7.82 17.36 -18.75 -0.33 -8.15 16 21 O -0.51 -4.82 13.42 -39.26 -0.53 -5.34 16 22 C -0.06 -0.82 2.70 -154.49 -0.42 -1.24 16 23 C -0.12 -1.28 8.84 37.16 0.33 -0.95 16 24 C -0.10 -1.38 8.08 37.15 0.30 -1.08 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 7.42 8.54 -40.82 -0.35 7.07 16 30 H 0.41 1.98 9.10 45.56 0.41 2.39 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 33 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.07 1.09 7.02 -51.93 -0.36 0.72 16 35 H 0.08 1.18 7.26 -51.93 -0.38 0.80 16 36 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -31.47 307.77 -5.94 -37.41 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.27 Total: 8.00 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.86 Total: -1.00 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.35 Total: -39.32 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.78 Total: -25.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.47 -5.94 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.833 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds