Wall clock time and date at job start Mon Mar 30 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99737 * 2 1 4 4 H 1.48494 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46991 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.46706 * 60.00047 * 3 2 1 7 7 C 1.37876 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99770 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00062 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47157 * 180.02562 * 13 11 10 15 15 C 1.47249 * 120.07517 * 270.02392 * 14 13 11 16 16 C 1.53106 * 108.40373 * 249.97059 * 15 14 13 17 17 C 1.51685 * 110.75364 * 274.40897 * 16 15 14 18 18 N 1.45759 * 113.93529 * 66.77316 * 17 16 15 19 19 C 1.46879 * 112.43547 * 292.28072 * 18 17 16 20 20 C 1.33609 * 120.07568 * 89.99959 * 14 13 11 21 21 O 1.21275 * 119.88548 * 0.56858 * 20 14 13 22 22 H 0.96994 * 120.00323 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47270 * 60.00616 * 9 7 2 24 24 H 1.09000 * 109.47399 * 300.00225 * 9 7 2 25 25 H 0.96996 * 120.00351 * 0.02562 * 10 9 7 26 26 H 1.09010 * 109.47019 * 60.00203 * 13 11 10 27 27 H 1.09000 * 109.47382 * 300.00155 * 13 11 10 28 28 H 1.09000 * 109.67870 * 9.69787 * 15 14 13 29 29 H 1.09001 * 109.67847 * 130.20441 * 15 14 13 30 30 H 1.08997 * 109.22299 * 34.74406 * 16 15 14 31 31 H 1.09010 * 109.22000 * 154.12933 * 16 15 14 32 32 H 1.08999 * 108.59411 * 305.61711 * 17 16 15 33 33 H 1.09004 * 108.58907 * 187.92099 * 17 16 15 34 34 H 1.00901 * 110.99900 * 167.26639 * 18 17 16 35 35 H 1.08996 * 109.60090 * 205.54375 * 19 18 17 36 36 H 1.09006 * 109.59962 * 325.86087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7332 -6.0287 -0.0016 14 7 2.0008 -7.2975 -0.0028 15 6 1.6311 -7.9372 1.2709 16 6 2.4767 -9.2024 1.4397 17 6 1.8285 -10.3799 0.7367 18 7 1.7939 -10.2558 -0.7152 19 6 0.8988 -9.1815 -1.1647 20 6 1.6664 -7.8765 -1.1595 21 8 1.9792 -7.3552 -2.2088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4354 -0.0002 26 1 3.3600 -5.9713 0.8884 27 1 3.3599 -5.9706 -0.8916 28 1 1.8266 -7.2523 2.0960 29 1 0.5736 -8.2012 1.2558 30 1 3.4663 -9.0318 1.0160 31 1 2.5753 -9.4291 2.5014 32 1 0.8064 -10.4826 1.1012 33 1 2.3788 -11.2847 0.9951 34 1 1.5500 -11.1343 -1.1474 35 1 0.5488 -9.3958 -2.1745 36 1 0.0459 -9.1097 -0.4896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083747629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:08 Heat of formation + Delta-G solvation = -66.201830 kcal Electronic energy + Delta-G solvation = -19090.157875 eV Core-core repulsion = 15995.269266 eV Total energy + Delta-G solvation = -3094.888609 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39130 -38.44997 -36.96791 -35.12635 -34.09432 -32.32530 -31.63334 -29.43337 -27.30715 -25.74713 -25.04744 -22.53266 -21.27919 -19.96296 -18.87380 -17.34413 -17.27151 -17.14193 -15.86877 -15.76484 -15.09532 -14.83356 -14.53839 -14.23018 -14.03532 -13.84719 -13.62357 -13.09164 -12.70557 -12.49664 -12.20248 -11.95056 -11.65794 -11.48953 -11.33561 -11.12585 -10.94058 -10.88040 -10.30927 -9.92103 -9.46298 -9.36517 -8.75948 -8.72615 -8.42188 -7.86648 -6.15282 -4.22099 2.70516 2.97340 3.24745 3.31811 3.35137 3.37270 3.93382 4.19209 4.40969 4.51780 4.57771 4.66903 4.86548 5.08526 5.20714 5.22330 5.23987 5.35075 5.41770 5.53759 5.56548 5.60443 5.65024 5.97537 6.42384 6.59379 6.95700 7.32054 7.45252 7.47009 7.53719 7.68301 7.98348 8.32728 8.64063 8.79587 9.11132 9.44523 10.95050 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.050685 B = 0.003984 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.298598 B = 7025.864318 C = 7139.058811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.711 5.711 11 C 0.483 3.517 12 O -0.550 6.550 13 C 0.093 3.907 14 N -0.586 5.586 15 C 0.113 3.887 16 C -0.141 4.141 17 C 0.060 3.940 18 N -0.687 5.687 19 C 0.047 3.953 20 C 0.533 3.467 21 O -0.542 6.542 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.391 0.609 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.355 0.645 35 H 0.103 0.897 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -20.523 4.335 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.360 5.360 11 C 0.266 3.734 12 O -0.429 6.429 13 C -0.033 4.033 14 N -0.318 5.318 15 C -0.010 4.010 16 C -0.180 4.180 17 C -0.069 4.069 18 N -0.322 5.322 19 C -0.085 4.085 20 C 0.319 3.681 21 O -0.418 6.418 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.223 0.777 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.175 0.825 35 H 0.121 0.879 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.147 -19.862 3.761 20.860 hybrid contribution -0.078 0.703 0.282 0.762 sum 5.069 -19.158 4.043 20.226 Atomic orbital electron populations 1.69989 1.06134 1.27175 1.49069 1.24964 0.94914 0.99490 0.94706 0.86349 0.79848 0.82922 0.77729 1.19594 1.20788 1.20819 1.21273 0.93332 0.90428 1.53003 0.91782 1.19098 0.88321 0.81971 0.97652 1.46432 1.11143 1.06046 1.72396 1.20928 0.89986 0.84729 0.77745 1.90639 1.16800 1.84850 1.50626 1.21401 0.94130 0.82773 1.05041 1.47376 1.56575 1.21377 1.06512 1.21827 0.99082 0.94274 0.85827 1.21909 1.00838 0.94497 1.00730 1.21500 0.99411 0.98918 0.87046 1.59077 1.55678 1.09090 1.08307 1.22230 0.93640 0.89759 1.02914 1.20335 0.78828 0.85857 0.83058 1.90706 1.54083 1.65615 1.31405 0.92522 0.95600 0.95627 0.77670 0.88041 0.87288 0.89382 0.90800 0.90165 0.89888 0.95054 0.90608 0.82464 0.87873 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 10 N -0.71 -15.39 5.55 -61.47 -0.34 -15.74 16 11 C 0.48 10.01 7.90 -10.99 -0.09 9.92 16 12 O -0.55 -13.70 16.43 5.56 0.09 -13.61 16 13 C 0.09 1.42 5.84 -5.20 -0.03 1.39 16 14 N -0.59 -8.56 1.97 -174.43 -0.34 -8.90 16 15 C 0.11 1.21 5.92 -3.58 -0.02 1.18 16 16 C -0.14 -1.10 5.86 -27.34 -0.16 -1.26 16 17 C 0.06 0.43 5.92 -5.11 -0.03 0.40 16 18 N -0.69 -6.14 6.55 -116.29 -0.76 -6.90 16 19 C 0.05 0.53 6.13 -4.64 -0.03 0.50 16 20 C 0.53 8.64 7.19 -11.16 -0.08 8.56 16 21 O -0.54 -11.12 16.63 5.56 0.09 -11.03 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 26 H 0.10 1.15 8.03 -51.92 -0.42 0.73 16 27 H 0.11 1.68 7.39 -51.93 -0.38 1.30 16 28 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 29 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 30 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.03 0.20 7.79 -51.93 -0.40 -0.20 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.36 2.28 8.89 -39.29 -0.35 1.93 16 35 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 36 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -36.61 302.64 -6.94 -43.55 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.07 Total: 3.89 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -0.88 Total: 13.87 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.71 Total: -57.31 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.18 Total: -24.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.61 -6.94 -43.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083747629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.656 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds