Wall clock time and date at job start Mon Mar 30 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99737 * 2 1 4 4 H 1.48494 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46991 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.46706 * 60.00047 * 3 2 1 7 7 C 1.37876 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99770 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00062 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47157 * 180.02562 * 13 11 10 15 15 C 1.47249 * 120.07517 * 270.02392 * 14 13 11 16 16 C 1.53106 * 108.40373 * 249.97059 * 15 14 13 17 17 C 1.51685 * 110.75364 * 274.40897 * 16 15 14 18 18 N 1.45759 * 113.93529 * 66.77316 * 17 16 15 19 19 C 1.46879 * 112.43547 * 292.28072 * 18 17 16 20 20 C 1.33609 * 120.07568 * 89.99959 * 14 13 11 21 21 O 1.21275 * 119.88548 * 0.56858 * 20 14 13 22 22 H 0.96994 * 120.00323 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47270 * 60.00616 * 9 7 2 24 24 H 1.09000 * 109.47399 * 300.00225 * 9 7 2 25 25 H 0.96996 * 120.00351 * 0.02562 * 10 9 7 26 26 H 1.09010 * 109.47019 * 60.00203 * 13 11 10 27 27 H 1.09000 * 109.47382 * 300.00155 * 13 11 10 28 28 H 1.09000 * 109.67870 * 9.69787 * 15 14 13 29 29 H 1.09001 * 109.67847 * 130.20441 * 15 14 13 30 30 H 1.08997 * 109.22299 * 34.74406 * 16 15 14 31 31 H 1.09010 * 109.22000 * 154.12933 * 16 15 14 32 32 H 1.08999 * 108.59411 * 305.61711 * 17 16 15 33 33 H 1.09004 * 108.58907 * 187.92099 * 17 16 15 34 34 H 1.00901 * 110.99900 * 167.26639 * 18 17 16 35 35 H 1.08996 * 109.60090 * 205.54375 * 19 18 17 36 36 H 1.09006 * 109.59962 * 325.86087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7332 -6.0287 -0.0016 14 7 2.0008 -7.2975 -0.0028 15 6 1.6311 -7.9372 1.2709 16 6 2.4767 -9.2024 1.4397 17 6 1.8285 -10.3799 0.7367 18 7 1.7939 -10.2558 -0.7152 19 6 0.8988 -9.1815 -1.1647 20 6 1.6664 -7.8765 -1.1595 21 8 1.9792 -7.3552 -2.2088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4354 -0.0002 26 1 3.3600 -5.9713 0.8884 27 1 3.3599 -5.9706 -0.8916 28 1 1.8266 -7.2523 2.0960 29 1 0.5736 -8.2012 1.2558 30 1 3.4663 -9.0318 1.0160 31 1 2.5753 -9.4291 2.5014 32 1 0.8064 -10.4826 1.1012 33 1 2.3788 -11.2847 0.9951 34 1 1.5500 -11.1343 -1.1474 35 1 0.5488 -9.3958 -2.1745 36 1 0.0459 -9.1097 -0.4896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083747629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:07 Heat of formation + Delta-G solvation = -96.962332 kcal Electronic energy + Delta-G solvation = -19091.491751 eV Core-core repulsion = 15995.269266 eV Total energy + Delta-G solvation = -3096.222485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59859 -40.10368 -37.95445 -36.37172 -35.92509 -34.38615 -32.49128 -30.80094 -29.03119 -26.97828 -25.98872 -24.52962 -22.01646 -21.64364 -20.14148 -18.99631 -18.34328 -18.19368 -17.62588 -17.16808 -16.62051 -16.23456 -15.95450 -15.76117 -15.22433 -14.84076 -14.50572 -14.43571 -14.27015 -14.01705 -13.90826 -13.46315 -12.92354 -12.91926 -12.73069 -12.35777 -12.23426 -12.14214 -11.82781 -11.48301 -11.17274 -11.04397 -10.83715 -9.87814 -9.75932 -9.47884 -8.31126 -6.48183 1.42026 1.43891 1.50558 1.57693 1.69436 1.87533 2.33995 2.67354 3.03771 3.22420 3.57602 3.85867 3.91935 3.99993 4.03543 4.21460 4.34297 4.47505 4.53282 4.54927 4.76963 4.84102 5.03508 5.06641 5.19754 5.33929 5.36499 5.45678 5.66426 5.81956 5.89787 6.34552 6.43109 6.62808 6.83878 7.13305 7.21114 7.43637 8.81473 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.050685 B = 0.003984 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.298598 B = 7025.864318 C = 7139.058811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.705 5.705 11 C 0.479 3.521 12 O -0.597 6.597 13 C 0.104 3.896 14 N -0.588 5.588 15 C 0.104 3.896 16 C -0.131 4.131 17 C 0.055 3.945 18 N -0.692 5.692 19 C 0.056 3.944 20 C 0.517 3.483 21 O -0.598 6.598 22 H 0.269 0.731 23 H -0.021 1.021 24 H -0.009 1.009 25 H 0.410 0.590 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.371 0.629 35 H 0.104 0.896 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.609 -21.512 5.704 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.356 5.356 11 C 0.265 3.735 12 O -0.479 6.479 13 C -0.023 4.023 14 N -0.319 5.319 15 C -0.018 4.018 16 C -0.170 4.170 17 C -0.073 4.073 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.305 3.695 21 O -0.478 6.478 22 H 0.078 0.922 23 H -0.003 1.003 24 H 0.009 0.991 25 H 0.246 0.754 26 H 0.168 0.832 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.193 0.807 35 H 0.123 0.877 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.321 -20.917 5.172 22.756 hybrid contribution -0.795 0.944 -0.117 1.240 sum 6.526 -19.973 5.055 21.611 Atomic orbital electron populations 1.70151 1.08358 1.28550 1.50042 1.26106 0.95795 1.04034 0.93766 0.85072 0.79105 0.77104 0.77699 1.17520 1.20630 1.20175 1.21659 0.94389 0.90478 1.52833 0.89641 1.18530 0.88707 0.84457 0.93845 1.46175 1.11304 1.05439 1.72674 1.22014 0.90388 0.85437 0.75683 1.90611 1.19351 1.85539 1.52384 1.21413 0.92726 0.80818 1.07342 1.47668 1.55793 1.20700 1.07716 1.22161 0.99774 0.95737 0.84091 1.21870 0.99413 0.93025 1.02670 1.21636 1.00452 0.99534 0.85722 1.59024 1.54929 1.09132 1.09799 1.22082 0.93498 0.88457 1.03627 1.21327 0.78343 0.87194 0.82641 1.90665 1.56428 1.67379 1.33360 0.92230 1.00297 0.99120 0.75432 0.83155 0.87204 0.88554 0.90955 0.91170 0.86840 0.93931 0.88254 0.80693 0.87728 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.92 29.54 68.60 2.03 44.95 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -30.89 9.28 25.60 0.24 -30.66 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.27 15.19 5.43 85.63 0.46 15.65 16 10 N -0.71 -30.98 5.55 -466.78 -2.59 -33.57 16 11 C 0.48 20.14 7.90 87.65 0.69 20.84 16 12 O -0.60 -30.90 16.43 -3.03 -0.05 -30.95 16 13 C 0.10 3.04 5.84 85.63 0.50 3.54 16 14 N -0.59 -16.64 1.97 -824.81 -1.62 -18.26 16 15 C 0.10 2.01 5.92 86.27 0.51 2.52 16 16 C -0.13 -1.62 5.86 30.20 0.18 -1.44 16 17 C 0.06 0.60 5.92 86.09 0.51 1.11 16 18 N -0.69 -10.83 6.55 -521.81 -3.42 -14.25 16 19 C 0.06 1.22 6.13 85.78 0.53 1.75 16 20 C 0.52 16.76 7.19 88.06 0.63 17.39 16 21 O -0.60 -25.26 16.63 -3.01 -0.05 -25.31 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.41 14.68 8.32 -92.71 -0.77 13.91 16 26 H 0.15 2.93 8.03 -2.38 -0.02 2.91 16 27 H 0.11 3.30 7.39 -2.39 -0.02 3.28 16 28 H 0.10 1.69 7.92 -2.39 -0.02 1.67 16 29 H 0.07 1.43 6.77 -2.39 -0.02 1.41 16 30 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 31 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.04 0.40 7.79 -2.39 -0.02 0.38 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.37 3.86 8.89 -89.69 -0.80 3.06 16 35 H 0.10 2.22 8.13 -2.39 -0.02 2.20 16 36 H 0.08 1.48 6.68 -2.38 -0.02 1.46 16 Total: -1.00 -84.03 302.64 -1.17 -85.20 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.46 Total: 17.87 kcal Atomic # 6 Polarization: 26.59 SS G_CDS: 4.71 Total: 31.30 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -7.34 Total: -123.07 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.10 Total: -56.25 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -84.03 -1.17 -85.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083747629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.764 kcal (2) G-P(sol) polarization free energy of solvation -84.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds