Wall clock time and date at job start Mon Mar 30 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46896 * 109.47354 * 120.00360 * 2 1 3 5 5 C 1.46904 * 110.99743 * 274.99956 * 4 2 1 6 6 C 1.50702 * 109.46935 * 179.97438 * 5 4 2 7 7 O 1.21296 * 120.00004 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00643 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99688 * 359.97438 * 9 8 6 11 11 C 1.38948 * 120.00737 * 180.02562 * 9 8 6 12 12 N 1.31408 * 120.00215 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99668 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46956 * 90.00209 * 13 11 9 15 15 H 1.48497 * 109.47075 * 210.00301 * 13 11 9 16 16 H 1.48505 * 109.47055 * 330.00105 * 13 11 9 17 17 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 18 18 O 1.21283 * 119.99488 * 239.99768 * 17 2 1 19 19 N 1.34777 * 120.00290 * 60.00208 * 17 2 1 20 20 C 1.46498 * 119.99828 * 180.27728 * 19 17 2 21 21 C 1.52996 * 117.49788 * 223.46917 * 20 19 17 22 22 C 1.53005 * 117.50003 * 154.80791 * 20 19 17 23 23 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 24 24 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 26 26 H 1.00899 * 111.00390 * 151.04420 * 4 2 1 27 27 H 1.08992 * 109.47000 * 299.99435 * 5 4 2 28 28 H 1.08994 * 109.47240 * 59.99967 * 5 4 2 29 29 H 0.97006 * 120.00009 * 359.97438 * 8 6 5 30 30 H 0.97003 * 120.00128 * 179.97438 * 12 11 9 31 31 H 0.97001 * 119.99727 * 359.97438 * 19 17 2 32 32 H 1.09004 * 115.55144 * 9.13400 * 20 19 17 33 33 H 1.09004 * 117.49811 * 0.02562 * 21 20 19 34 34 H 1.08995 * 117.50167 * 145.01896 * 21 20 19 35 35 H 1.08995 * 117.50170 * 214.97748 * 22 20 19 36 36 H 1.09004 * 117.49249 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2226 2.3468 6 6 2.5874 -0.5219 3.5559 7 8 2.8670 -1.6991 3.4703 8 7 2.7284 0.1202 4.7324 9 6 3.1882 -0.5568 5.8323 10 1 3.4372 -1.6050 5.7560 11 6 3.3331 0.1051 7.0453 12 7 3.7743 -0.5438 8.0994 13 14 2.9018 1.9179 7.1774 14 1 1.4724 2.0605 7.5537 15 1 3.7527 2.5548 8.2145 16 1 3.1377 2.5794 5.8689 17 6 2.0323 -0.7103 -1.2306 18 8 2.7295 -1.6964 -1.1193 19 7 1.7067 -0.2498 -2.4546 20 6 2.1900 -0.9439 -3.6508 21 6 2.7254 -0.0850 -4.7981 22 6 1.3734 -0.7896 -4.9355 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9173 -1.1206 1.0286 27 1 2.7589 1.0460 2.1182 28 1 1.0872 0.6162 2.5525 29 1 2.5052 1.0618 4.8008 30 1 3.8757 -0.0816 8.9462 31 1 1.1488 0.5387 -2.5436 32 1 2.6730 -1.9050 -3.4738 33 1 2.7185 0.9966 -4.6627 34 1 3.5603 -0.4810 -5.3761 35 1 1.3195 -1.6489 -5.6039 36 1 0.4764 -0.1719 -4.8905 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161829531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:52 Heat of formation + Delta-G solvation = -68.568468 kcal Electronic energy + Delta-G solvation = -18380.480946 eV Core-core repulsion = 15285.489712 eV Total energy + Delta-G solvation = -3094.991235 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17155 -40.22656 -38.22928 -36.80464 -35.92686 -34.07584 -33.74884 -31.45770 -28.27445 -26.16545 -24.74041 -23.26437 -22.41136 -21.32994 -21.26663 -20.37302 -18.62410 -17.88623 -17.35193 -16.89943 -16.71658 -16.12748 -15.67620 -15.66346 -15.24469 -15.00811 -14.56626 -14.42249 -14.04511 -13.65561 -13.51672 -13.16993 -12.98911 -12.82283 -12.52030 -12.41787 -12.38444 -12.32228 -11.96425 -11.51286 -11.47966 -10.90047 -10.44223 -10.25299 -9.78628 -9.42407 -8.40886 -6.02657 1.31015 1.37586 1.46520 1.47929 1.93392 1.95670 2.24541 2.74827 2.98505 3.14844 3.33828 3.63360 3.81637 4.05353 4.07669 4.09197 4.11930 4.25741 4.42175 4.53385 4.77266 4.79069 4.81201 4.93584 5.03104 5.21645 5.35331 5.47778 5.52936 5.86394 5.99052 6.19215 6.50646 6.59879 6.88027 7.18527 7.39127 7.97091 8.77110 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049327 B = 0.003544 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.504041 B = 7898.337929 C = 8111.270631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 H 0.106 0.894 4 N -0.680 5.680 5 C 0.063 3.937 6 C 0.445 3.555 7 O -0.618 6.618 8 N -0.588 5.588 9 C -0.332 4.332 10 H 0.051 0.949 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.970 3.030 14 H -0.255 1.255 15 H -0.276 1.276 16 H -0.228 1.228 17 C 0.513 3.487 18 O -0.579 6.579 19 N -0.682 5.682 20 C 0.045 3.955 21 C -0.182 4.182 22 C -0.169 4.169 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.346 0.654 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.392 0.608 30 H 0.280 0.720 31 H 0.419 0.581 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 13.304 -25.534 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 H 0.123 0.877 4 N -0.315 5.315 5 C -0.069 4.069 6 C 0.233 3.767 7 O -0.502 6.502 8 N -0.230 5.230 9 C -0.461 4.461 10 H 0.069 0.931 11 C -0.216 4.216 12 N -0.577 5.577 13 Si 0.789 3.211 14 H -0.179 1.179 15 H -0.201 1.201 16 H -0.151 1.151 17 C 0.300 3.700 18 O -0.457 6.457 19 N -0.334 5.334 20 C -0.061 4.061 21 C -0.221 4.221 22 C -0.207 4.207 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.167 0.833 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.228 0.772 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.020 11.556 -25.134 29.097 hybrid contribution 0.807 0.928 0.576 1.358 sum -8.213 12.484 -24.558 28.747 Atomic orbital electron populations 1.21809 0.90271 1.02698 1.04323 1.21677 0.99009 0.97336 0.86359 0.87702 1.60079 1.36056 1.32127 1.03265 1.21748 1.03724 0.93467 0.87972 1.21019 0.82411 0.87927 0.85327 1.90574 1.55333 1.18922 1.85380 1.41972 1.60560 1.11780 1.08653 1.19007 1.42660 0.95983 0.88447 0.93111 1.26195 0.96261 1.05424 0.93678 1.69817 1.46217 1.39800 1.01838 0.85303 0.79487 0.75944 0.80351 1.17902 1.20096 1.15101 1.21048 0.79101 0.84074 0.85817 1.90724 1.39804 1.28217 1.86979 1.45141 1.52977 1.31644 1.03623 1.21617 1.04801 0.98370 0.81295 1.23510 0.98208 0.99970 1.00402 1.23480 0.95820 1.03910 0.97461 0.88538 0.93603 0.90259 0.83290 0.89930 0.85595 0.77231 0.91101 0.74247 0.87417 0.87169 0.87687 0.87234 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.31 71.98 0.67 -1.47 16 2 C 0.07 1.47 3.03 44.17 0.13 1.60 16 3 H 0.11 1.52 7.80 -2.39 -0.02 1.50 16 4 N -0.68 -22.38 5.81 -499.47 -2.90 -25.28 16 5 C 0.06 1.94 5.97 85.56 0.51 2.45 16 6 C 0.45 20.94 7.82 87.66 0.69 21.63 16 7 O -0.62 -36.66 15.78 -3.08 -0.05 -36.71 16 8 N -0.59 -28.20 5.09 -306.99 -1.56 -29.76 16 9 C -0.33 -19.93 10.16 84.04 0.85 -19.08 16 10 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 11 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 12 N -0.94 -57.41 13.96 21.66 0.30 -57.10 16 13 Si 0.97 38.67 27.74 68.60 1.90 40.58 16 14 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 15 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 17 C 0.51 12.80 7.18 87.66 0.63 13.42 16 18 O -0.58 -21.16 15.21 -3.04 -0.05 -21.21 16 19 N -0.68 -10.82 5.46 -442.53 -2.42 -13.23 16 20 C 0.05 0.74 6.43 44.99 0.29 1.03 16 21 C -0.18 -1.91 10.46 30.62 0.32 -1.59 16 22 C -0.17 -1.58 10.46 30.62 0.32 -1.26 16 23 H 0.10 0.77 7.56 -2.38 -0.02 0.76 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.16 7.45 -2.39 -0.02 1.15 16 26 H 0.35 13.76 7.15 -89.69 -0.64 13.12 16 27 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 28 H 0.13 3.01 7.44 -2.39 -0.02 2.99 16 29 H 0.39 15.15 5.76 -92.70 -0.53 14.62 16 30 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.42 3.32 8.24 -92.71 -0.76 2.56 16 32 H 0.11 2.43 7.40 -2.39 -0.02 2.41 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -87.71 309.35 -0.77 -88.47 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.88 Total: 38.02 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 4.88 Total: 16.22 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -6.58 Total: -125.38 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.09 Total: -57.91 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.58 kcal Total: -87.71 -0.77 -88.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161829531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.904 kcal (2) G-P(sol) polarization free energy of solvation -87.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds