Wall clock time and date at job start Mon Mar 30 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46554 * 2 1 4 4 H 1.09004 * 109.47070 * 304.53775 * 3 2 1 5 5 C 1.50706 * 109.46983 * 184.54379 * 3 2 1 6 6 H 1.08003 * 119.99551 * 245.62670 * 5 3 2 7 7 C 1.37869 * 119.99980 * 65.62147 * 5 3 2 8 8 N 1.31513 * 119.99917 * 195.89819 * 7 5 3 9 9 Si 1.86802 * 120.00126 * 15.90280 * 7 5 3 10 10 H 1.48507 * 109.47108 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46948 * 299.99356 * 9 7 5 12 12 H 1.48494 * 109.47238 * 59.99843 * 9 7 5 13 13 O 1.45199 * 109.47412 * 64.54026 * 3 2 1 14 14 C 1.34223 * 117.00035 * 269.99901 * 13 3 2 15 15 O 1.20829 * 120.00258 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.53937 * 113.74119 * 278.74278 * 16 14 13 18 18 N 1.47815 * 86.03645 * 222.08478 * 17 16 14 19 19 C 1.34777 * 134.45536 * 204.65578 * 18 17 16 20 20 C 1.50699 * 120.00347 * 359.85155 * 19 18 17 21 21 O 1.21282 * 119.99792 * 179.86829 * 19 18 17 22 22 C 1.47578 * 91.05061 * 24.54543 * 18 17 16 23 23 H 1.08996 * 109.47984 * 300.00385 * 1 2 3 24 24 H 1.09005 * 109.47343 * 60.00663 * 1 2 3 25 25 H 1.09005 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47549 * 240.00205 * 2 1 3 27 27 H 1.09002 * 109.46857 * 119.99307 * 2 1 3 28 28 H 0.97002 * 120.00398 * 354.88140 * 8 7 5 29 29 H 1.08998 * 112.93893 * 50.33645 * 16 14 13 30 30 H 1.09004 * 113.77293 * 336.34660 * 17 16 14 31 31 H 1.09003 * 113.76988 * 107.74650 * 17 16 14 32 32 H 1.09003 * 109.46800 * 90.00551 * 20 19 18 33 33 H 1.08993 * 109.47623 * 210.00986 * 20 19 18 34 34 H 1.09009 * 109.47105 * 330.01161 * 20 19 18 35 35 H 1.08998 * 113.77498 * 221.15253 * 22 18 17 36 36 H 1.09007 * 113.86616 * 89.76754 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6116 1.9793 -0.8466 5 6 3.5427 1.4442 -0.1126 6 1 4.1451 1.8081 0.7066 7 6 4.1484 0.9810 -1.2612 8 7 5.4302 0.6864 -1.2557 9 14 3.1487 0.7719 -2.8252 10 1 4.0269 0.2643 -3.9099 11 1 2.0491 -0.1966 -2.5840 12 1 2.5756 2.0821 -3.2253 13 8 1.6463 2.0951 1.2360 14 6 0.4631 2.7288 1.2406 15 8 -0.2214 2.7376 0.2449 16 6 -0.0122 3.4283 2.4880 17 6 -0.6545 2.4850 3.5210 18 7 -1.6721 3.5419 3.7012 19 6 -2.5062 3.8885 4.7015 20 6 -2.5087 3.1022 5.9871 21 8 -3.2549 4.8330 4.5669 22 6 -1.4060 4.0666 2.3477 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 5.9655 0.8646 -0.4666 29 1 0.7366 4.0980 2.9110 30 1 -1.0487 1.5646 3.0903 31 1 -0.0370 2.3132 4.4027 32 1 -1.7895 3.5377 6.6808 33 1 -3.5044 3.1323 6.4295 34 1 -2.2339 2.0677 5.7809 35 1 -1.3874 5.1551 2.2942 36 1 -2.0207 3.6130 1.5702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190840017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:17 Heat of formation + Delta-G solvation = -94.746098 kcal Electronic energy + Delta-G solvation = -19292.194766 eV Core-core repulsion = 16163.775633 eV Total energy + Delta-G solvation = -3128.419133 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89717 -39.49326 -37.75196 -35.96279 -33.64537 -31.99471 -31.34711 -29.05388 -27.58384 -26.37503 -24.20588 -22.49193 -20.77989 -19.62332 -19.17176 -18.01479 -17.34038 -17.17678 -16.28977 -16.05228 -15.47720 -15.08848 -14.08540 -13.88655 -13.47161 -13.21337 -13.01845 -12.95347 -12.70740 -12.62459 -12.54231 -12.20028 -12.13147 -11.70866 -11.35392 -11.26060 -10.98655 -10.58726 -10.22298 -10.06524 -9.92079 -9.71030 -9.57785 -8.95999 -8.92102 -8.44191 -6.69660 -4.31541 2.38888 2.51661 2.59182 3.26251 3.35245 3.38850 3.50917 4.06906 4.22273 4.31004 4.66030 4.89352 4.94617 5.04426 5.12800 5.14063 5.23294 5.38753 5.42023 5.45223 5.65659 5.80683 5.86704 5.88590 5.98611 6.35822 6.54012 6.69456 6.73574 7.09686 7.28331 7.42518 7.73160 7.91893 8.17104 8.35699 8.76225 9.36991 10.73227 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.004761 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.482136 B = 5879.112012 C = 5967.512355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.200 3.800 4 H 0.039 0.961 5 C -0.608 4.608 6 H 0.069 0.931 7 C 0.040 3.960 8 N -0.893 5.893 9 Si 1.036 2.964 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.339 6.339 14 C 0.461 3.539 15 O -0.512 6.512 16 C -0.125 4.125 17 C 0.121 3.879 18 N -0.648 5.648 19 C 0.535 3.465 20 C -0.167 4.167 21 O -0.549 6.549 22 C 0.126 3.874 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 1.265 10.379 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.147 3.853 4 H 0.057 0.943 5 C -0.645 4.645 6 H 0.087 0.913 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.863 3.137 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.254 6.254 14 C 0.303 3.697 15 O -0.402 6.402 16 C -0.145 4.145 17 C -0.001 4.001 18 N -0.385 5.385 19 C 0.326 3.674 20 C -0.227 4.227 21 O -0.426 6.426 22 C 0.004 3.996 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.340 1.259 8.605 15.097 hybrid contribution 0.048 0.455 1.515 1.583 sum -12.292 1.714 10.120 16.014 Atomic orbital electron populations 1.21909 0.97454 0.99889 1.01339 1.22454 0.93741 0.99376 1.03126 1.20967 0.96279 0.88068 0.80011 0.94321 1.21936 0.88605 1.49329 1.04675 0.91333 1.25658 0.97374 0.92586 1.01021 1.70864 1.07239 1.40596 1.33920 0.84185 0.75613 0.77821 0.76080 1.20418 1.19483 1.20398 1.86544 1.33781 1.61981 1.43103 1.22890 0.80888 0.77058 0.88865 1.90625 1.56003 1.58531 1.35004 1.23018 0.98464 0.99234 0.93760 1.23178 0.87046 0.91920 0.98000 1.50105 1.39666 1.33271 1.15418 1.20504 0.77806 0.84447 0.84632 1.21841 1.05305 1.00766 0.94769 1.90730 1.39902 1.30060 1.81956 1.23106 0.91572 1.01042 0.83854 0.94188 0.92605 0.93979 0.90191 0.91915 0.91792 0.84828 0.88746 0.88339 0.88730 0.88791 0.90143 0.89100 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.56 37.16 0.32 -2.38 16 2 C -0.15 -3.18 5.32 -26.73 -0.14 -3.32 16 3 C 0.20 4.76 1.84 -27.88 -0.05 4.71 16 4 H 0.04 0.97 5.84 -51.93 -0.30 0.66 16 5 C -0.61 -16.68 9.17 -34.44 -0.32 -17.00 16 6 H 0.07 2.02 8.06 -52.48 -0.42 1.60 16 7 C 0.04 1.11 5.33 -17.82 -0.09 1.02 16 8 N -0.89 -26.27 13.70 55.43 0.76 -25.51 16 9 Si 1.04 24.20 26.27 -169.99 -4.47 19.73 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -5.74 5.62 56.52 0.32 -5.43 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.34 -7.12 9.80 -39.24 -0.38 -7.50 16 14 C 0.46 8.08 5.93 36.01 0.21 8.29 16 15 O -0.51 -10.03 13.05 -18.75 -0.24 -10.27 16 16 C -0.12 -1.55 4.44 -90.85 -0.40 -1.95 16 17 C 0.12 1.21 7.96 -2.84 -0.02 1.19 16 18 N -0.65 -7.47 3.61 -178.24 -0.64 -8.11 16 19 C 0.54 6.55 8.17 -10.99 -0.09 6.46 16 20 C -0.17 -1.26 10.14 36.01 0.37 -0.90 16 21 O -0.55 -9.07 17.83 5.56 0.10 -8.97 16 22 C 0.13 1.55 8.17 -2.97 -0.02 1.53 16 23 H 0.04 0.68 6.07 -51.93 -0.31 0.36 16 24 H 0.05 1.05 7.77 -51.93 -0.40 0.65 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.77 4.68 -51.93 -0.24 1.52 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 29 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.47 7.85 -51.92 -0.41 0.06 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.34 7.43 -51.92 -0.39 0.95 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -32.80 300.63 -5.69 -38.50 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.10 Total: -0.03 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.25 Total: -2.36 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.12 Total: -33.62 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.53 Total: -26.74 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.47 Total: 19.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.80 -5.69 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190840017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.248 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds