Wall clock time and date at job start Mon Mar 30 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46554 * 2 1 4 4 H 1.09004 * 109.47070 * 304.53775 * 3 2 1 5 5 C 1.50706 * 109.46983 * 184.54379 * 3 2 1 6 6 H 1.08003 * 119.99551 * 245.62670 * 5 3 2 7 7 C 1.37869 * 119.99980 * 65.62147 * 5 3 2 8 8 N 1.31513 * 119.99917 * 195.89819 * 7 5 3 9 9 Si 1.86802 * 120.00126 * 15.90280 * 7 5 3 10 10 H 1.48507 * 109.47108 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46948 * 299.99356 * 9 7 5 12 12 H 1.48494 * 109.47238 * 59.99843 * 9 7 5 13 13 O 1.45199 * 109.47412 * 64.54026 * 3 2 1 14 14 C 1.34223 * 117.00035 * 269.99901 * 13 3 2 15 15 O 1.20829 * 120.00258 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.53937 * 113.74119 * 278.74278 * 16 14 13 18 18 N 1.47815 * 86.03645 * 222.08478 * 17 16 14 19 19 C 1.34777 * 134.45536 * 204.65578 * 18 17 16 20 20 C 1.50699 * 120.00347 * 359.85155 * 19 18 17 21 21 O 1.21282 * 119.99792 * 179.86829 * 19 18 17 22 22 C 1.47578 * 91.05061 * 24.54543 * 18 17 16 23 23 H 1.08996 * 109.47984 * 300.00385 * 1 2 3 24 24 H 1.09005 * 109.47343 * 60.00663 * 1 2 3 25 25 H 1.09005 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47549 * 240.00205 * 2 1 3 27 27 H 1.09002 * 109.46857 * 119.99307 * 2 1 3 28 28 H 0.97002 * 120.00398 * 354.88140 * 8 7 5 29 29 H 1.08998 * 112.93893 * 50.33645 * 16 14 13 30 30 H 1.09004 * 113.77293 * 336.34660 * 17 16 14 31 31 H 1.09003 * 113.76988 * 107.74650 * 17 16 14 32 32 H 1.09003 * 109.46800 * 90.00551 * 20 19 18 33 33 H 1.08993 * 109.47623 * 210.00986 * 20 19 18 34 34 H 1.09009 * 109.47105 * 330.01161 * 20 19 18 35 35 H 1.08998 * 113.77498 * 221.15253 * 22 18 17 36 36 H 1.09007 * 113.86616 * 89.76754 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6116 1.9793 -0.8466 5 6 3.5427 1.4442 -0.1126 6 1 4.1451 1.8081 0.7066 7 6 4.1484 0.9810 -1.2612 8 7 5.4302 0.6864 -1.2557 9 14 3.1487 0.7719 -2.8252 10 1 4.0269 0.2643 -3.9099 11 1 2.0491 -0.1966 -2.5840 12 1 2.5756 2.0821 -3.2253 13 8 1.6463 2.0951 1.2360 14 6 0.4631 2.7288 1.2406 15 8 -0.2214 2.7376 0.2449 16 6 -0.0122 3.4283 2.4880 17 6 -0.6545 2.4850 3.5210 18 7 -1.6721 3.5419 3.7012 19 6 -2.5062 3.8885 4.7015 20 6 -2.5087 3.1022 5.9871 21 8 -3.2549 4.8330 4.5669 22 6 -1.4060 4.0666 2.3477 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 5.9655 0.8646 -0.4666 29 1 0.7366 4.0980 2.9110 30 1 -1.0487 1.5646 3.0903 31 1 -0.0370 2.3132 4.4027 32 1 -1.7895 3.5377 6.6808 33 1 -3.5044 3.1323 6.4295 34 1 -2.2339 2.0677 5.7809 35 1 -1.3874 5.1551 2.2942 36 1 -2.0207 3.6130 1.5702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190840017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:17 Heat of formation + Delta-G solvation = -116.995663 kcal Electronic energy + Delta-G solvation = -19293.159579 eV Core-core repulsion = 16163.775633 eV Total energy + Delta-G solvation = -3129.383946 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08253 -40.76431 -38.87679 -37.52099 -35.51995 -33.85805 -32.26132 -30.02133 -29.27026 -27.25459 -25.49971 -24.24690 -22.30931 -21.12374 -20.08417 -19.87842 -18.90937 -18.12669 -17.61726 -17.34246 -16.64252 -16.23291 -15.69250 -15.14280 -15.05009 -14.71748 -14.45676 -14.18250 -13.97113 -13.71153 -13.60824 -13.27934 -13.21275 -12.99643 -12.90041 -12.68963 -12.38938 -12.17356 -11.91045 -11.60323 -11.52543 -11.26442 -10.97213 -10.83952 -10.55687 -9.92143 -8.91033 -6.53963 1.20679 1.40561 1.47699 1.48622 1.53865 1.66513 2.09650 2.36667 2.92945 3.07801 3.38425 3.74644 3.86271 4.06404 4.20303 4.27839 4.28039 4.36181 4.44139 4.44464 4.53029 4.63409 4.63456 4.70284 4.91367 5.04365 5.06435 5.10624 5.14416 5.44144 5.50322 5.86500 5.97801 6.41049 6.53981 6.89739 7.00392 7.24062 8.51195 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.004761 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.482136 B = 5879.112012 C = 5967.512355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.028 0.972 5 C -0.616 4.616 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.922 5.922 9 Si 1.068 2.932 10 H -0.277 1.277 11 H -0.235 1.235 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.461 3.539 15 O -0.532 6.532 16 C -0.118 4.118 17 C 0.131 3.869 18 N -0.646 5.646 19 C 0.529 3.471 20 C -0.159 4.159 21 O -0.601 6.601 22 C 0.121 3.879 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.259 0.741 29 H 0.152 0.848 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 0.329 11.388 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.147 3.853 4 H 0.046 0.954 5 C -0.653 4.653 6 H 0.051 0.949 7 C -0.203 4.203 8 N -0.556 5.556 9 Si 0.889 3.111 10 H -0.202 1.202 11 H -0.159 1.159 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.304 3.696 15 O -0.423 6.423 16 C -0.138 4.138 17 C 0.010 3.990 18 N -0.382 5.382 19 C 0.322 3.678 20 C -0.218 4.218 21 O -0.482 6.482 22 C -0.002 4.002 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.170 0.830 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.066 0.306 9.648 17.059 hybrid contribution 0.604 0.834 1.275 1.639 sum -13.461 1.140 10.923 17.373 Atomic orbital electron populations 1.21822 0.94687 1.01843 1.01373 1.22324 0.96129 0.97120 1.02795 1.20671 0.93766 0.89880 0.80961 0.95385 1.22108 0.90956 1.48652 1.03597 0.94938 1.26946 0.97487 0.91880 1.03974 1.70974 1.08319 1.42854 1.33493 0.83805 0.75525 0.79074 0.72726 1.20234 1.15892 1.19600 1.86519 1.35900 1.62746 1.41592 1.23775 0.79387 0.76147 0.90279 1.90616 1.56215 1.59098 1.36334 1.23128 0.98674 0.99944 0.92066 1.23341 0.86291 0.91036 0.98365 1.50146 1.39727 1.33467 1.14819 1.21413 0.76689 0.83970 0.85744 1.21884 1.06322 1.01279 0.92277 1.90708 1.42043 1.32496 1.82986 1.23083 0.91350 1.01185 0.84555 0.93365 0.93406 0.91033 0.91010 0.91821 0.93179 0.83040 0.88075 0.84881 0.86758 0.88366 0.87832 0.88979 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.56 71.98 0.62 -4.04 16 2 C -0.15 -5.95 5.32 30.60 0.16 -5.79 16 3 C 0.20 9.46 1.84 29.85 0.05 9.51 16 4 H 0.03 1.39 5.84 -2.38 -0.01 1.37 16 5 C -0.62 -34.44 9.17 25.60 0.23 -34.20 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.00 -0.14 5.33 84.65 0.45 0.31 16 8 N -0.92 -55.51 13.70 21.44 0.29 -55.22 16 9 Si 1.07 48.11 26.27 68.60 1.80 49.91 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.23 -9.26 5.62 99.48 0.56 -8.70 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 O -0.35 -14.46 9.80 -51.34 -0.50 -14.97 16 14 C 0.46 15.43 5.93 71.24 0.42 15.85 16 15 O -0.53 -20.18 13.05 21.95 0.29 -19.90 16 16 C -0.12 -2.67 4.44 -10.88 -0.05 -2.72 16 17 C 0.13 2.14 7.96 86.44 0.69 2.82 16 18 N -0.65 -13.25 3.61 -836.20 -3.02 -16.27 16 19 C 0.53 11.81 8.17 87.66 0.72 12.53 16 20 C -0.16 -1.83 10.14 71.24 0.72 -1.11 16 21 O -0.60 -19.46 17.83 -3.03 -0.05 -19.51 16 22 C 0.12 2.80 8.17 86.49 0.71 3.50 16 23 H 0.05 1.50 6.07 -2.39 -0.01 1.48 16 24 H 0.05 1.67 7.77 -2.38 -0.02 1.65 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 26 H 0.07 3.02 4.68 -2.39 -0.01 3.01 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 29 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 31 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.73 7.85 -2.38 -0.02 0.72 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.35 7.43 -2.38 -0.02 2.33 16 Total: -1.00 -73.39 300.63 4.42 -68.97 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.89 Total: 10.31 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.73 Total: -3.33 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.73 Total: -71.49 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.27 Total: -54.37 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.80 Total: 49.91 kcal Total: -73.39 4.42 -68.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190840017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.026 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds