Wall clock time and date at job start Mon Mar 30 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47272 * 2 1 4 4 C 1.50704 * 109.47396 * 119.99625 * 2 1 3 5 5 H 1.08000 * 119.99925 * 119.99830 * 4 2 1 6 6 C 1.37876 * 120.00307 * 300.00776 * 4 2 1 7 7 N 1.31512 * 120.00174 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99709 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47354 * 90.00308 * 8 6 4 10 10 H 1.48501 * 109.46883 * 210.00549 * 8 6 4 11 11 H 1.48500 * 109.47039 * 330.00381 * 8 6 4 12 12 N 1.46495 * 109.47549 * 239.99910 * 2 1 3 13 13 C 1.46503 * 119.99815 * 300.00331 * 12 2 1 14 14 C 1.34777 * 120.00544 * 119.99606 * 12 2 1 15 15 O 1.21282 * 119.99508 * 0.02562 * 14 12 2 16 16 C 1.50692 * 120.00369 * 180.02562 * 14 12 2 17 17 H 1.08999 * 109.71872 * 39.62569 * 16 14 12 18 18 C 1.52992 * 109.59318 * 279.22610 * 16 14 12 19 19 N 1.46005 * 110.04419 * 189.93288 * 18 16 14 20 20 C 1.33714 * 122.92876 * 18.16075 * 19 18 16 21 21 O 1.21278 * 118.62792 * 178.31321 * 20 19 18 22 22 C 1.50256 * 122.74925 * 358.33237 * 20 19 18 23 23 N 1.46906 * 109.97829 * 17.18065 * 22 20 19 24 24 H 1.08998 * 109.47324 * 299.99948 * 1 2 3 25 25 H 1.08997 * 109.47192 * 60.00439 * 1 2 3 26 26 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99601 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47063 * 269.99231 * 13 12 2 29 29 H 1.09000 * 109.47572 * 29.99791 * 13 12 2 30 30 H 1.09000 * 109.47287 * 149.99818 * 13 12 2 31 31 H 1.09002 * 109.37607 * 69.75327 * 18 16 14 32 32 H 1.09000 * 109.37454 * 310.10722 * 18 16 14 33 33 H 0.96998 * 118.53607 * 198.18077 * 19 18 16 34 34 H 1.08996 * 109.39019 * 257.02597 * 22 20 19 35 35 H 1.09003 * 109.38750 * 137.33299 * 22 20 19 36 36 H 1.00905 * 110.99615 * 73.07004 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8023 0.8743 2.6993 10 1 0.9769 1.9954 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0864 1.1254 -1.8912 16 6 3.2951 -0.7459 -3.3140 17 1 2.5106 -1.3887 -3.7133 18 6 4.5187 -1.5914 -2.9552 19 7 5.1530 -2.0944 -4.1702 20 6 4.9313 -1.5658 -5.3783 21 8 5.5239 -2.0255 -6.3313 22 6 3.9790 -0.4258 -5.6044 23 7 3.6867 0.2443 -4.3301 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.9031 -0.5279 4.4375 28 1 2.4158 -2.7377 -0.9716 29 1 0.6904 -2.3003 -0.9846 30 1 1.6238 -2.2853 -2.5001 31 1 4.2081 -2.4320 -2.3347 32 1 5.2313 -0.9796 -2.4019 33 1 5.7622 -2.8457 -4.0979 34 1 3.0525 -0.8078 -6.0331 35 1 4.4275 0.2889 -6.2944 36 1 4.4768 0.7891 -4.0186 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230894959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:05 Heat of formation + Delta-G solvation = -76.303730 kcal Electronic energy + Delta-G solvation = -19693.414612 eV Core-core repulsion = 16598.087951 eV Total energy + Delta-G solvation = -3095.326661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.82720 -40.53119 -37.91375 -37.11577 -34.80731 -34.73610 -32.66517 -30.74190 -27.70966 -27.11475 -26.58471 -25.50414 -22.95714 -21.03533 -20.14625 -19.04434 -18.46196 -18.06266 -17.51071 -17.30901 -16.73015 -16.16546 -16.06560 -15.72746 -15.11047 -14.93300 -14.73478 -14.43271 -14.10910 -14.07109 -13.49158 -13.46258 -13.34474 -13.03937 -12.75127 -12.63257 -12.50478 -12.02223 -11.80818 -11.56174 -11.31044 -10.77413 -10.67911 -10.30293 -9.60036 -9.38274 -8.32507 -6.36377 1.28938 1.38947 1.41417 1.46524 1.60481 2.03962 2.15113 2.30079 3.03615 3.08138 3.33334 3.61827 3.65881 3.79790 4.19109 4.34295 4.44889 4.47697 4.55691 4.62777 4.63652 4.66549 4.80724 5.00861 5.12660 5.31344 5.42883 5.51090 5.68187 5.73897 6.02605 6.09368 6.22300 6.65998 6.73031 7.01378 7.23175 7.36820 8.83093 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.005364 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.596330 B = 5219.203857 C = 5433.562385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.232 3.768 3 H 0.033 0.967 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.937 3.063 9 H -0.256 1.256 10 H -0.299 1.299 11 H -0.261 1.261 12 N -0.590 5.590 13 C 0.075 3.925 14 C 0.515 3.485 15 O -0.580 6.580 16 C 0.065 3.935 17 H 0.140 0.860 18 C 0.089 3.911 19 N -0.708 5.708 20 C 0.484 3.516 21 O -0.594 6.594 22 C 0.054 3.946 23 N -0.664 5.664 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.267 0.733 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -3.036 -14.958 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.128 3.872 3 H 0.050 0.950 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.765 3.235 9 H -0.182 1.182 10 H -0.227 1.227 11 H -0.186 1.186 12 N -0.320 5.320 13 C -0.067 4.067 14 C 0.301 3.699 15 O -0.459 6.459 16 C -0.048 4.048 17 H 0.157 0.843 18 C -0.038 4.038 19 N -0.360 5.360 20 C 0.270 3.730 21 O -0.474 6.474 22 C -0.078 4.078 23 N -0.295 5.295 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.118 -2.327 -15.333 15.549 hybrid contribution 0.870 -0.132 1.272 1.547 sum -0.247 -2.459 -14.061 14.276 Atomic orbital electron populations 1.22327 0.96751 1.02390 0.99891 1.18962 0.91725 0.93516 0.82978 0.94959 1.21360 1.31560 1.13109 0.89961 0.93098 1.25591 0.97124 0.99240 0.95498 1.69991 1.47220 1.42108 0.98578 0.86044 0.79950 0.80526 0.77024 1.18158 1.22733 1.18605 1.47882 1.49136 1.13403 1.21593 1.21978 1.02203 0.80093 1.02426 1.20531 0.78516 0.86623 0.84188 1.90651 1.59272 1.18942 1.77084 1.21814 0.98568 0.93229 0.91234 0.84260 1.21993 0.94587 1.00329 0.86856 1.45527 1.47723 1.36251 1.06497 1.21860 0.83240 0.85592 0.82268 1.90751 1.51500 1.63912 1.41227 1.22407 0.99251 0.93180 0.92939 1.60600 1.43863 1.22545 1.02541 0.94221 0.92495 0.90861 0.92385 0.92500 0.90525 0.88235 0.87173 0.91425 0.75451 0.84962 0.85174 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 8.65 71.98 0.62 -5.34 16 2 C 0.23 10.27 2.23 44.24 0.10 10.36 16 3 H 0.03 1.65 5.96 -2.39 -0.01 1.64 16 4 C -0.52 -27.36 8.95 25.60 0.23 -27.14 16 5 H 0.05 2.88 7.89 -2.91 -0.02 2.86 16 6 C 0.02 1.34 5.45 84.65 0.46 1.80 16 7 N -0.94 -55.64 13.96 21.45 0.30 -55.34 16 8 Si 0.94 43.45 24.37 68.60 1.67 45.13 16 9 H -0.26 -10.94 6.87 99.48 0.68 -10.25 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 12 N -0.59 -20.59 2.75 -826.81 -2.28 -22.87 16 13 C 0.07 1.88 8.86 127.77 1.13 3.01 16 14 C 0.51 17.28 6.91 87.65 0.61 17.89 16 15 O -0.58 -24.84 15.72 -3.04 -0.05 -24.89 16 16 C 0.07 1.44 2.15 44.11 0.09 1.53 16 17 H 0.14 2.34 6.24 -2.39 -0.01 2.32 16 18 C 0.09 1.72 6.50 86.47 0.56 2.28 16 19 N -0.71 -12.95 5.52 -466.09 -2.57 -15.52 16 20 C 0.48 10.38 7.81 87.68 0.69 11.06 16 21 O -0.59 -17.32 17.82 -3.02 -0.05 -17.37 16 22 C 0.05 0.91 6.68 85.42 0.57 1.48 16 23 N -0.66 -14.35 6.29 -499.58 -3.14 -17.49 16 24 H 0.04 1.61 3.27 -2.39 -0.01 1.60 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 2.53 6.66 -2.39 -0.02 2.52 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.06 1.43 7.80 -2.38 -0.02 1.41 16 29 H 0.08 1.96 6.43 -2.39 -0.02 1.95 16 30 H 0.10 1.59 5.94 -2.39 -0.01 1.58 16 31 H 0.11 1.84 7.19 -2.39 -0.02 1.82 16 32 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.41 6.70 8.84 -92.71 -0.82 5.88 16 34 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.35 8.29 8.53 -89.69 -0.77 7.52 16 Total: -1.00 -72.39 286.72 -1.59 -73.98 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.53 Total: 17.42 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 5.06 Total: 16.95 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -7.69 Total: -111.21 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.10 Total: -42.26 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.67 Total: 45.13 kcal Total: -72.39 -1.59 -73.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230894959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.322 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds