Wall clock time and date at job start Mon Mar 30 2020 04:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 112.85049 * 2 1 4 4 C 1.53779 * 113.69329 * 228.72638 * 2 1 3 5 5 C 1.53955 * 87.11322 * 220.07982 * 4 2 1 6 6 C 1.53776 * 87.01922 * 25.36379 * 5 4 2 7 7 H 1.09000 * 113.61943 * 89.22618 * 6 5 4 8 8 N 1.46503 * 113.61398 * 220.05199 * 6 5 4 9 9 C 1.34783 * 119.99449 * 254.13584 * 8 6 5 10 10 O 1.21590 * 119.99935 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99768 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47268 * 89.99721 * 20 18 16 22 22 H 1.48498 * 109.47211 * 209.99980 * 20 18 16 23 23 H 1.48505 * 109.46734 * 329.99774 * 20 18 16 24 24 H 1.08998 * 109.47606 * 288.80480 * 1 2 3 25 25 H 1.09001 * 109.47021 * 48.80754 * 1 2 3 26 26 H 1.09002 * 109.47686 * 168.80473 * 1 2 3 27 27 H 1.08997 * 113.61218 * 334.55999 * 4 2 1 28 28 H 1.09000 * 113.61211 * 105.45795 * 4 2 1 29 29 H 1.08999 * 113.60965 * 270.84158 * 5 4 2 30 30 H 1.08996 * 113.66176 * 139.89100 * 5 4 2 31 31 H 0.96992 * 120.00655 * 74.13311 * 8 6 5 32 32 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 34 34 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 35 35 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 36 36 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1479 -0.9289 -1.0583 5 6 3.1940 -1.3143 0.0034 6 6 2.1460 -0.9280 1.0603 7 1 1.4944 -1.7521 1.3508 8 7 2.7073 -0.2142 2.2099 9 6 2.8436 -0.8445 3.3935 10 8 2.5001 -2.0054 3.5071 11 7 3.3605 -0.1881 4.4510 12 6 3.5091 -0.8733 5.7373 13 6 4.1067 0.0743 6.7452 14 8 4.3809 1.2105 6.4211 15 7 4.3353 -0.3404 8.0071 16 6 4.8785 0.5219 8.9242 17 1 5.1234 1.5333 8.6353 18 6 5.1147 0.0943 10.2248 19 7 4.8171 -1.1366 10.5762 20 14 5.8541 1.2693 11.4747 21 1 4.7651 1.9959 12.1757 22 1 6.6534 0.5019 12.4632 23 1 6.7316 2.2444 10.7786 24 1 -0.3634 0.3312 0.9728 25 1 -0.3633 0.6768 -0.7733 26 1 -0.3634 -1.0081 -0.1995 27 1 1.4974 -1.7541 -1.3482 28 1 2.5671 -0.3986 -1.9134 29 1 4.0730 -0.6697 0.0042 30 1 3.4454 -2.3748 0.0050 31 1 2.9810 0.7119 2.1194 32 1 3.6348 0.7379 4.3602 33 1 4.1651 -1.7354 5.6161 34 1 2.5318 -1.2067 6.0863 35 1 4.1157 -1.2489 8.2663 36 1 4.9817 -1.4350 11.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347810918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:40 Heat of formation + Delta-G solvation = -58.426359 kcal Electronic energy + Delta-G solvation = -18336.369165 eV Core-core repulsion = 15241.817725 eV Total energy + Delta-G solvation = -3094.551440 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24202 -38.85754 -37.95321 -34.38399 -33.64933 -33.23595 -31.35308 -29.99259 -27.67309 -25.07001 -24.05252 -23.19136 -20.65682 -19.93676 -19.56943 -18.25663 -17.82587 -16.80764 -15.57765 -15.41686 -14.95834 -14.72875 -14.53562 -14.14345 -14.02799 -13.66535 -13.42942 -13.41847 -12.85568 -12.15988 -12.12876 -11.88426 -11.72306 -11.62028 -11.32698 -11.11645 -10.65879 -10.47646 -10.45215 -10.31027 -9.96681 -9.62417 -9.05805 -8.60915 -8.56007 -8.08623 -6.50190 -3.92239 2.88854 3.12489 3.22789 3.28313 3.41014 3.76776 4.10226 4.23526 4.40998 4.46761 4.64665 4.73901 4.92380 5.16482 5.18611 5.27609 5.47913 5.51875 5.57022 5.65559 5.80581 5.87642 5.94321 5.99602 6.03236 6.10346 6.18696 6.63002 6.78796 7.16326 7.47127 7.93822 8.28237 8.46747 8.84030 9.05945 9.41066 9.89029 10.66771 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.059887 B = 0.003266 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.436484 B = 8571.916822 C = 8703.183644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 H 0.093 0.907 4 C -0.135 4.135 5 C -0.157 4.157 6 C 0.148 3.852 7 H 0.114 0.886 8 N -0.739 5.739 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.725 5.725 12 C 0.128 3.872 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.550 5.550 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.396 0.604 32 H 0.406 0.594 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 0.515 -18.535 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.111 0.889 4 C -0.173 4.173 5 C -0.196 4.196 6 C 0.042 3.958 7 H 0.132 0.868 8 N -0.393 5.393 9 C 0.404 3.596 10 O -0.478 6.478 11 N -0.382 5.382 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.230 0.770 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.610 0.091 -18.382 19.219 hybrid contribution 0.532 0.816 0.823 1.275 sum -5.077 0.907 -17.559 18.301 Atomic orbital electron populations 1.21727 0.94375 1.01969 1.01962 1.22997 0.96205 0.99002 0.95858 0.88909 1.22837 0.98440 0.99422 0.96579 1.23469 0.97871 1.02263 0.95973 1.22479 0.95188 0.95532 0.82593 0.86832 1.45098 1.68967 1.15717 1.09515 1.15937 0.78621 0.84831 0.80247 1.90892 1.56995 1.15799 1.84134 1.44796 1.67304 1.16825 1.09316 1.20777 1.01754 0.94911 0.82562 1.19780 0.85931 0.88861 0.83962 1.90488 1.58413 1.20433 1.79162 1.41789 1.54047 1.14677 1.07926 1.19726 1.37667 0.96295 0.89740 0.87703 1.25322 0.97471 0.96752 0.98192 1.69619 1.47362 1.16190 1.20345 0.85813 0.78978 0.79589 0.79644 1.20281 1.20804 1.19328 0.92280 0.92546 0.92386 0.89821 0.91034 0.89849 0.90957 0.76997 0.75651 0.90057 0.90046 0.77008 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.71 37.15 0.36 -0.73 16 2 C -0.12 -0.97 4.10 -89.81 -0.37 -1.34 16 3 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 4 C -0.13 -0.98 7.64 -25.83 -0.20 -1.18 16 5 C -0.16 -1.45 7.89 -25.83 -0.20 -1.66 16 6 C 0.15 1.59 3.77 -67.12 -0.25 1.34 16 7 H 0.11 1.43 7.46 -51.93 -0.39 1.05 16 8 N -0.74 -9.09 5.37 -57.87 -0.31 -9.40 16 9 C 0.70 11.71 8.57 -86.91 -0.74 10.96 16 10 O -0.60 -11.97 15.96 5.29 0.08 -11.89 16 11 N -0.73 -12.45 5.53 -66.41 -0.37 -12.81 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 13 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 14 O -0.60 -15.40 15.24 5.55 0.08 -15.31 16 15 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 16 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 20 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.43 7.95 -51.93 -0.41 0.01 16 27 H 0.08 0.57 7.97 -51.93 -0.41 0.15 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.40 3.94 8.73 -40.82 -0.36 3.58 16 32 H 0.41 6.74 7.45 -40.82 -0.30 6.44 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -31.60 310.21 -7.04 -38.64 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.09 Total: 15.86 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.77 Total: 11.77 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.01 Total: -59.34 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.17 Total: -27.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.60 -7.04 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347810918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.784 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds