Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 112.85049 * 2 1 4 4 C 1.53779 * 113.69329 * 228.72638 * 2 1 3 5 5 C 1.53955 * 87.11322 * 220.07982 * 4 2 1 6 6 C 1.53776 * 87.01922 * 25.36379 * 5 4 2 7 7 H 1.09000 * 113.61943 * 89.22618 * 6 5 4 8 8 N 1.46503 * 113.61398 * 220.05199 * 6 5 4 9 9 C 1.34783 * 119.99449 * 254.13584 * 8 6 5 10 10 O 1.21590 * 119.99935 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99768 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47268 * 89.99721 * 20 18 16 22 22 H 1.48498 * 109.47211 * 209.99980 * 20 18 16 23 23 H 1.48505 * 109.46734 * 329.99774 * 20 18 16 24 24 H 1.08998 * 109.47606 * 288.80480 * 1 2 3 25 25 H 1.09001 * 109.47021 * 48.80754 * 1 2 3 26 26 H 1.09002 * 109.47686 * 168.80473 * 1 2 3 27 27 H 1.08997 * 113.61218 * 334.55999 * 4 2 1 28 28 H 1.09000 * 113.61211 * 105.45795 * 4 2 1 29 29 H 1.08999 * 113.60965 * 270.84158 * 5 4 2 30 30 H 1.08996 * 113.66176 * 139.89100 * 5 4 2 31 31 H 0.96992 * 120.00655 * 74.13311 * 8 6 5 32 32 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 34 34 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 35 35 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 36 36 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1479 -0.9289 -1.0583 5 6 3.1940 -1.3143 0.0034 6 6 2.1460 -0.9280 1.0603 7 1 1.4944 -1.7521 1.3508 8 7 2.7073 -0.2142 2.2099 9 6 2.8436 -0.8445 3.3935 10 8 2.5001 -2.0054 3.5071 11 7 3.3605 -0.1881 4.4510 12 6 3.5091 -0.8733 5.7373 13 6 4.1067 0.0743 6.7452 14 8 4.3809 1.2105 6.4211 15 7 4.3353 -0.3404 8.0071 16 6 4.8785 0.5219 8.9242 17 1 5.1234 1.5333 8.6353 18 6 5.1147 0.0943 10.2248 19 7 4.8171 -1.1366 10.5762 20 14 5.8541 1.2693 11.4747 21 1 4.7651 1.9959 12.1757 22 1 6.6534 0.5019 12.4632 23 1 6.7316 2.2444 10.7786 24 1 -0.3634 0.3312 0.9728 25 1 -0.3633 0.6768 -0.7733 26 1 -0.3634 -1.0081 -0.1995 27 1 1.4974 -1.7541 -1.3482 28 1 2.5671 -0.3986 -1.9134 29 1 4.0730 -0.6697 0.0042 30 1 3.4454 -2.3748 0.0050 31 1 2.9810 0.7119 2.1194 32 1 3.6348 0.7379 4.3602 33 1 4.1651 -1.7354 5.6161 34 1 2.5318 -1.2067 6.0863 35 1 4.1157 -1.2489 8.2663 36 1 4.9817 -1.4350 11.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347810918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = -82.153021 kcal Electronic energy + Delta-G solvation = -18337.398030 eV Core-core repulsion = 15241.817725 eV Total energy + Delta-G solvation = -3095.580305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40118 -40.28697 -39.38252 -36.23339 -35.25896 -34.39669 -33.35470 -30.65268 -29.26255 -26.63936 -25.29198 -23.90508 -21.92101 -21.37405 -20.79043 -20.09892 -19.25314 -17.88048 -17.38247 -16.84315 -16.54648 -16.18945 -15.75877 -15.63072 -15.41552 -15.06873 -14.51704 -14.11716 -13.95387 -13.70216 -13.59099 -13.53871 -12.91337 -12.65900 -12.49875 -12.45560 -12.12455 -12.05560 -11.56859 -11.39865 -11.29914 -11.19242 -10.55602 -10.35507 -10.09844 -9.74226 -8.50836 -6.01231 1.36720 1.42761 1.54907 1.65723 1.89759 2.11163 2.29142 3.05976 3.16381 3.36053 3.52342 3.72399 3.93913 3.99461 4.21235 4.42710 4.46099 4.54926 4.59156 4.73656 4.87147 4.96261 5.02386 5.12428 5.22922 5.30853 5.34129 5.38995 5.43527 5.70246 5.92079 6.00661 6.48198 7.03494 7.05435 7.43043 7.55235 7.94415 8.66175 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.059887 B = 0.003266 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.436484 B = 8571.916822 C = 8703.183644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.122 4.122 5 C -0.157 4.157 6 C 0.131 3.869 7 H 0.091 0.909 8 N -0.722 5.722 9 C 0.702 3.298 10 O -0.635 6.635 11 N -0.725 5.725 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 1.227 -19.576 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.125 0.875 4 C -0.160 4.160 5 C -0.196 4.196 6 C 0.025 3.975 7 H 0.110 0.890 8 N -0.376 5.376 9 C 0.402 3.598 10 O -0.517 6.517 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.194 1.194 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.648 0.815 -19.469 20.288 hybrid contribution 0.512 0.579 1.069 1.319 sum -5.136 1.394 -18.401 19.155 Atomic orbital electron populations 1.21734 0.94087 1.02402 1.01827 1.22982 0.96386 0.99221 0.94300 0.87549 1.22806 0.97403 0.99388 0.96394 1.23473 0.98183 1.01810 0.96110 1.22747 0.96109 0.96093 0.82503 0.89043 1.45056 1.67847 1.16267 1.08449 1.16072 0.78300 0.84438 0.80975 1.90867 1.58549 1.17430 1.84816 1.44712 1.67706 1.16885 1.08926 1.20573 1.01914 0.93940 0.82283 1.20406 0.84560 0.88972 0.83960 1.90464 1.59181 1.21871 1.79663 1.41837 1.54602 1.14622 1.08415 1.19746 1.39663 0.96198 0.91063 0.89529 1.26140 0.97267 0.98344 0.99405 1.69686 1.47567 1.17359 1.21067 0.84859 0.78297 0.77588 0.77186 1.19545 1.19659 1.19390 0.93491 0.90955 0.92368 0.89272 0.89211 0.89331 0.91957 0.75403 0.75233 0.89189 0.89163 0.76704 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.71 71.98 0.70 -1.22 16 2 C -0.11 -1.50 4.10 -10.27 -0.04 -1.55 16 3 H 0.11 1.21 8.11 -2.39 -0.02 1.19 16 4 C -0.12 -1.47 7.64 31.18 0.24 -1.23 16 5 C -0.16 -2.68 7.89 31.18 0.25 -2.43 16 6 C 0.13 2.68 3.77 45.52 0.17 2.86 16 7 H 0.09 2.32 7.46 -2.39 -0.02 2.30 16 8 N -0.72 -17.04 5.37 -455.27 -2.44 -19.48 16 9 C 0.70 23.03 8.57 179.05 1.53 24.56 16 10 O -0.63 -25.39 15.96 -4.00 -0.06 -25.46 16 11 N -0.72 -24.50 5.53 -482.28 -2.67 -27.17 16 12 C 0.14 5.34 6.15 85.63 0.53 5.87 16 13 C 0.43 20.25 7.85 87.66 0.69 20.94 16 14 O -0.62 -32.33 15.24 -3.07 -0.05 -32.37 16 15 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 16 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 17 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 19 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 20 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.77 7.95 -2.39 -0.02 0.75 16 27 H 0.09 1.00 7.97 -2.39 -0.02 0.98 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.41 7.48 8.73 -92.71 -0.81 6.67 16 32 H 0.41 13.35 7.45 -92.71 -0.69 12.66 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 36 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -67.26 310.21 -0.31 -67.56 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -1.11 Total: 41.90 kcal Atomic # 6 Polarization: 24.48 SS G_CDS: 5.34 Total: 29.83 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.45 Total: -125.31 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -0.11 Total: -57.83 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -67.26 -0.31 -67.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347810918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.590 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds