Wall clock time and date at job start Mon Mar 30 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.53004 * 109.47052 * 239.99685 * 2 1 3 5 5 C 1.50696 * 109.46922 * 175.00184 * 4 2 1 6 6 O 1.21290 * 120.00349 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00229 * 180.02562 * 5 4 2 8 8 C 1.37092 * 120.00400 * 179.97438 * 7 5 4 9 9 H 1.07992 * 120.00427 * 224.48041 * 8 7 5 10 10 C 1.38956 * 119.99627 * 44.48507 * 8 7 5 11 11 N 1.31407 * 120.00041 * 17.99855 * 10 8 7 12 12 Si 1.86801 * 119.99792 * 197.99660 * 10 8 7 13 13 H 1.48496 * 109.47143 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47192 * 119.99805 * 12 10 8 15 15 H 1.48505 * 109.46983 * 240.00038 * 12 10 8 16 16 C 1.46503 * 119.99415 * 359.97438 * 7 5 4 17 17 C 1.53005 * 117.49539 * 183.27575 * 16 7 5 18 18 C 1.52999 * 117.49897 * 114.62029 * 16 7 5 19 19 N 1.46499 * 109.46815 * 119.99470 * 2 1 3 20 20 C 1.34774 * 120.00502 * 274.99890 * 19 2 1 21 21 N 1.34771 * 120.00239 * 180.02562 * 20 19 2 22 22 O 1.21587 * 119.99662 * 0.02562 * 20 19 2 23 23 H 1.08995 * 109.47278 * 300.00578 * 1 2 3 24 24 H 1.09002 * 109.47221 * 60.00043 * 1 2 3 25 25 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47080 * 295.00122 * 4 2 1 27 27 H 1.09001 * 109.47171 * 54.99923 * 4 2 1 28 28 H 0.97006 * 119.99838 * 174.96377 * 11 10 8 29 29 H 1.09004 * 115.55182 * 328.94037 * 16 7 5 30 30 H 1.09004 * 117.50044 * 359.97438 * 17 16 7 31 31 H 1.09007 * 117.49517 * 145.01817 * 17 16 7 32 32 H 1.09004 * 117.49746 * 214.97855 * 18 16 7 33 33 H 1.08999 * 117.49963 * 359.96681 * 18 16 7 34 34 H 0.97012 * 119.99455 * 95.00356 * 19 2 1 35 35 H 0.96999 * 119.99690 * 359.97438 * 21 20 19 36 36 H 0.97003 * 120.00445 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 8 4.1450 -0.0204 -0.4445 7 7 4.2149 -1.1798 -2.3347 8 6 5.5812 -1.0826 -2.3927 9 1 6.0660 -0.8387 -3.3263 10 6 6.3421 -1.2982 -1.2502 11 7 5.8195 -1.9277 -0.2218 12 14 8.1078 -0.6931 -1.1761 13 1 8.4547 -0.0207 -2.4539 14 1 8.2548 0.2688 -0.0544 15 1 9.0178 -1.8468 -0.9615 16 6 3.4863 -1.8975 -3.3837 17 6 4.3117 -2.5818 -4.4753 18 6 3.5215 -1.3107 -4.7962 19 7 2.0183 -0.6905 1.1962 20 6 2.1470 -0.0182 2.3572 21 7 2.5967 -0.6533 3.4575 22 8 1.8575 1.1615 2.4118 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7516 -1.7716 -1.2055 27 1 1.6054 -0.2619 -2.1370 28 1 6.3712 -2.1428 0.5466 29 1 2.5668 -2.3889 -3.0655 30 1 5.3967 -2.4976 -4.4132 31 1 3.9349 -3.5231 -4.8755 32 1 2.6252 -1.4162 -5.4075 33 1 4.0862 -0.3904 -4.9450 34 1 2.2490 -1.6318 1.1527 35 1 2.8273 -1.5945 3.4140 36 1 2.6890 -0.1695 4.2932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594248682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:41 Heat of formation + Delta-G solvation = -32.570370 kcal Electronic energy + Delta-G solvation = -19910.466599 eV Core-core repulsion = 16817.036359 eV Total energy + Delta-G solvation = -3093.430240 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44953 -38.44658 -36.30591 -34.91907 -33.19136 -32.70923 -31.03078 -30.16702 -27.62346 -24.68847 -22.00910 -21.65901 -21.11232 -20.21202 -19.13461 -17.75514 -16.69422 -16.36063 -16.02920 -15.02615 -14.76383 -14.47239 -14.22502 -13.77277 -13.59293 -13.36424 -12.95352 -12.56304 -12.10421 -11.78837 -11.51091 -11.40233 -10.99134 -10.92668 -10.86827 -10.55347 -10.36442 -10.14526 -9.96222 -9.73488 -9.70268 -9.20423 -8.70293 -8.38782 -7.92836 -6.99597 -6.11977 -3.85304 3.28573 3.39427 3.41405 3.47361 3.88721 4.15815 4.27162 4.76758 4.81823 5.00774 5.24202 5.36270 5.51264 5.57179 5.70562 5.77734 5.83271 5.99570 6.02272 6.11521 6.21403 6.23255 6.37658 6.49722 6.66546 6.75678 6.92351 7.13868 7.25595 7.40546 7.62645 8.28396 8.55152 9.08653 9.19057 9.21934 9.69193 10.33626 10.97191 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.008825 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.490230 B = 3172.133752 C = 4398.216368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.179 3.821 3 H 0.090 0.910 4 C -0.145 4.145 5 C 0.481 3.519 6 O -0.519 6.519 7 N -0.432 5.432 8 C -0.346 4.346 9 H 0.075 0.925 10 C 0.075 3.925 11 N -0.834 5.834 12 Si 0.910 3.090 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.077 3.923 17 C -0.175 4.175 18 C -0.209 4.209 19 N -0.716 5.716 20 C 0.714 3.286 21 N -0.872 5.872 22 O -0.609 6.609 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.260 0.740 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.395 0.605 35 H 0.395 0.605 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -3.729 -0.971 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.108 0.892 4 C -0.187 4.187 5 C 0.268 3.732 6 O -0.395 6.395 7 N -0.154 5.154 8 C -0.473 4.473 9 H 0.092 0.908 10 C -0.135 4.135 11 N -0.468 5.468 12 Si 0.737 3.263 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.213 1.213 16 C -0.030 4.030 17 C -0.213 4.213 18 C -0.248 4.248 19 N -0.369 5.369 20 C 0.413 3.587 21 N -0.439 5.439 22 O -0.488 6.488 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.228 0.772 35 H 0.222 0.778 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.365 -2.418 -0.423 8.718 hybrid contribution 1.222 -0.728 0.255 1.445 sum -7.143 -3.146 -0.168 7.807 Atomic orbital electron populations 1.22221 0.96154 1.01491 1.02124 1.20442 0.91812 0.97922 0.82482 0.89172 1.22014 0.97159 1.01336 0.98155 1.19740 0.87296 0.82008 0.84201 1.90584 1.69139 1.42598 1.37178 1.42809 1.05268 1.46651 1.20675 1.18846 0.80215 1.51420 0.96796 0.90761 1.25181 0.98528 0.94090 0.95683 1.69807 1.36107 1.34490 1.06351 0.86193 0.83078 0.78568 0.78431 1.19675 1.20750 1.21328 1.21685 0.97214 0.98979 0.85103 1.23064 1.00410 0.94902 1.02885 1.23324 1.02248 0.98223 1.01002 1.44828 1.70278 1.13393 1.08423 1.15836 0.77500 0.84686 0.80690 1.42912 1.74074 1.14802 1.12069 1.90883 1.58503 1.14453 1.85002 0.92268 0.91912 0.92925 0.90494 0.89337 0.92962 0.88125 0.87570 0.89907 0.89857 0.89169 0.77171 0.77802 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 2 C 0.18 3.21 2.13 -67.93 -0.15 3.07 16 3 H 0.09 1.94 7.39 -51.93 -0.38 1.56 16 4 C -0.15 -2.58 3.86 -27.88 -0.11 -2.69 16 5 C 0.48 11.53 6.82 -10.99 -0.07 11.46 16 6 O -0.52 -14.70 13.13 5.55 0.07 -14.62 16 7 N -0.43 -10.38 2.83 -107.73 -0.31 -10.69 16 8 C -0.35 -9.26 7.91 -14.93 -0.12 -9.38 16 9 H 0.07 1.96 7.27 -52.49 -0.38 1.58 16 10 C 0.08 2.08 4.39 -17.47 -0.08 2.00 16 11 N -0.83 -23.60 11.74 55.50 0.65 -22.95 16 12 Si 0.91 21.97 29.59 -169.99 -5.03 16.94 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.08 1.46 5.87 -67.93 -0.40 1.06 16 17 C -0.17 -3.06 9.80 -26.69 -0.26 -3.32 16 18 C -0.21 -3.46 10.36 -26.70 -0.28 -3.73 16 19 N -0.72 -12.96 4.22 -58.68 -0.25 -13.21 16 20 C 0.71 13.82 8.80 -86.93 -0.77 13.06 16 21 N -0.87 -12.75 8.88 27.63 0.25 -12.50 16 22 O -0.61 -14.08 16.84 5.29 0.09 -14.00 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 27 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 29 H 0.10 1.68 6.96 -51.93 -0.36 1.31 16 30 H 0.11 2.08 6.73 -51.93 -0.35 1.73 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.39 6.70 8.62 -40.81 -0.35 6.35 16 35 H 0.39 4.80 8.84 -40.82 -0.36 4.44 16 36 H 0.41 5.25 8.93 -40.82 -0.36 4.88 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -34.80 305.58 -6.83 -41.63 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -5.04 Total: 15.19 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.87 Total: 9.60 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.34 Total: -59.35 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: 0.16 Total: -28.62 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.80 -6.83 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594248682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.064 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds