Wall clock time and date at job start Mon Mar 30 2020 04:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99794 * 2 1 4 4 O 1.20822 * 120.00322 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99986 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47192 * 300.00265 * 5 3 2 7 7 N 1.46497 * 109.47359 * 180.02562 * 5 3 2 8 8 C 1.34774 * 120.00288 * 155.00118 * 7 5 3 9 9 O 1.21280 * 119.99761 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00338 * 179.97438 * 8 7 5 11 11 H 1.09003 * 109.46889 * 300.00448 * 10 8 7 12 12 C 1.53000 * 109.46939 * 59.99981 * 10 8 7 13 13 C 1.50694 * 109.47166 * 179.97438 * 10 8 7 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.53002 * 109.46850 * 59.99796 * 5 3 2 22 22 C 1.53000 * 117.50037 * 8.75323 * 21 5 3 23 23 C 1.52995 * 117.50134 * 300.08698 * 21 5 3 24 24 H 1.09000 * 109.47172 * 59.99838 * 1 2 3 25 25 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46827 * 299.99814 * 1 2 3 27 27 H 0.97006 * 119.99461 * 334.99857 * 7 5 3 28 28 H 1.08997 * 109.47359 * 180.02562 * 12 10 8 29 29 H 1.09007 * 109.47356 * 300.00035 * 12 10 8 30 30 H 1.09000 * 109.47156 * 59.99760 * 12 10 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.09007 * 115.54629 * 154.41556 * 21 5 3 33 33 H 1.08999 * 117.49824 * 359.97438 * 22 21 5 34 34 H 1.08996 * 117.49921 * 145.01881 * 22 21 5 35 35 H 1.08999 * 117.49960 * 214.97998 * 23 21 5 36 36 H 1.09000 * 117.49971 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9565 0.7806 0.8891 7 7 3.9817 2.6798 0.0002 8 6 5.1874 3.0258 0.4931 9 8 5.9284 2.1741 0.9365 10 6 5.6150 4.4708 0.4933 11 1 5.6317 4.8449 -0.5304 12 6 4.6268 5.2949 1.3213 13 6 6.9922 4.5871 1.0939 14 1 7.5067 3.7031 1.4404 15 6 7.5955 5.8224 1.2011 16 7 6.9692 6.8989 0.7787 17 14 9.3023 5.9666 1.9463 18 1 9.1867 6.1722 3.4124 19 1 10.0657 4.7209 1.6798 20 1 10.0116 7.1213 1.3389 21 6 4.1129 0.5816 -1.2502 22 6 3.1045 0.1506 -2.3171 23 6 3.7840 -0.9010 -1.4364 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.3889 3.3609 -0.3542 28 1 4.9357 6.3402 1.3211 29 1 3.6304 5.2108 0.8873 30 1 4.6099 4.9208 2.3449 31 1 7.3935 7.7679 0.8545 32 1 5.0890 0.9273 -1.5907 33 1 2.0517 0.3607 -2.1286 34 1 3.4173 0.2124 -3.3594 35 1 4.5436 -1.5307 -1.8997 36 1 3.1780 -1.3824 -0.6689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597327553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:38 Heat of formation + Delta-G solvation = -97.580411 kcal Electronic energy + Delta-G solvation = -19415.682735 eV Core-core repulsion = 16287.140697 eV Total energy + Delta-G solvation = -3128.542038 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00826 -38.86408 -37.13495 -36.66521 -33.73342 -33.53723 -30.58681 -28.74340 -26.84683 -25.10249 -22.70722 -22.58124 -22.19213 -20.22867 -19.35375 -17.54638 -17.45546 -16.89159 -16.18313 -15.42076 -15.36479 -14.83491 -14.54874 -14.21471 -13.75119 -13.47614 -12.98401 -12.85436 -12.49982 -12.28939 -11.85668 -11.49849 -11.45962 -11.00791 -10.94418 -10.82027 -10.71909 -10.63941 -10.44852 -10.25039 -10.00715 -9.94645 -8.95859 -8.68862 -8.64372 -8.32836 -6.01327 -4.04841 2.05339 2.40260 3.35389 3.41071 3.47448 3.59934 3.71071 3.90092 4.48027 4.57521 4.68112 4.87923 4.91038 4.98161 5.01343 5.30938 5.31783 5.46329 5.49053 5.61658 5.86377 6.04733 6.10896 6.20438 6.28195 6.67734 6.86256 6.88086 6.96927 7.49319 7.58028 7.78048 7.98275 8.13751 8.40777 9.03671 9.14774 9.60456 11.06239 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.036049 B = 0.005091 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.537397 B = 5498.318517 C = 5920.533140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.463 3.537 4 O -0.497 6.497 5 C 0.186 3.814 6 H 0.124 0.876 7 N -0.730 5.730 8 C 0.526 3.474 9 O -0.540 6.540 10 C 0.032 3.968 11 H 0.055 0.945 12 C -0.134 4.134 13 C -0.501 4.501 14 H 0.075 0.925 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.901 3.099 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.287 1.287 21 C -0.157 4.157 22 C -0.184 4.184 23 C -0.164 4.164 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.407 0.593 28 H 0.094 0.906 29 H 0.015 0.985 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 -12.791 -4.564 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.305 3.695 4 O -0.384 6.384 5 C 0.078 3.922 6 H 0.142 0.858 7 N -0.387 5.387 8 C 0.316 3.684 9 O -0.415 6.415 10 C 0.011 3.989 11 H 0.073 0.927 12 C -0.192 4.192 13 C -0.540 4.540 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.729 3.271 18 H -0.207 1.207 19 H -0.197 1.197 20 H -0.213 1.213 21 C -0.177 4.177 22 C -0.221 4.221 23 C -0.202 4.202 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.243 0.757 28 H 0.112 0.888 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.688 -12.900 -4.237 17.916 hybrid contribution 0.254 0.560 0.185 0.643 sum -11.434 -12.340 -4.052 17.304 Atomic orbital electron populations 1.23280 0.76461 1.03680 1.02650 1.86564 1.23284 1.33018 1.84134 1.23857 0.92030 0.81636 0.71953 1.90674 1.66708 1.36237 1.44762 1.19819 0.85159 0.86831 1.00352 0.85807 1.46234 1.20452 1.05700 1.66321 1.22126 0.78523 0.93784 0.73973 1.90543 1.52515 1.52740 1.45747 1.18885 0.96604 0.84552 0.98830 0.92740 1.21759 0.94744 1.04646 0.98055 1.21135 0.99084 0.93937 1.39820 0.90699 1.24956 0.98150 0.95641 0.95504 1.69880 1.37783 0.98400 1.47445 0.86440 0.83941 0.77575 0.79178 1.20687 1.19731 1.21321 1.22626 1.00985 0.97589 0.96451 1.23131 0.97574 1.04667 0.96710 1.23025 1.03126 0.91170 1.02862 0.91884 0.88016 0.91812 0.75703 0.88763 0.96636 0.94989 0.92951 0.85828 0.89231 0.88533 0.88439 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -4.07 7.46 -39.25 -0.29 -4.37 16 3 C 0.46 6.63 5.79 36.01 0.21 6.84 16 4 O -0.50 -8.18 15.59 -18.75 -0.29 -8.47 16 5 C 0.19 2.90 2.89 -69.08 -0.20 2.70 16 6 H 0.12 2.02 7.58 -51.93 -0.39 1.62 16 7 N -0.73 -13.40 4.85 -54.93 -0.27 -13.67 16 8 C 0.53 11.94 7.11 -10.99 -0.08 11.86 16 9 O -0.54 -13.66 15.12 5.56 0.08 -13.57 16 10 C 0.03 0.81 2.64 -92.93 -0.25 0.56 16 11 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 12 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 13 C -0.50 -14.19 8.37 -34.44 -0.29 -14.48 16 14 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 16 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 17 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.16 -2.16 5.98 -90.62 -0.54 -2.71 16 22 C -0.18 -2.09 9.54 -26.69 -0.25 -2.34 16 23 C -0.16 -1.80 9.77 -26.69 -0.26 -2.06 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.41 7.15 7.21 -40.82 -0.29 6.86 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.01 0.31 7.56 -51.93 -0.39 -0.09 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 33 H 0.09 1.02 5.86 -51.93 -0.30 0.72 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.10 6.83 -51.93 -0.35 0.75 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -31.29 303.30 -5.87 -37.16 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.93 Total: 5.78 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.36 Total: 0.40 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.36 Total: -38.30 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.50 Total: -26.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.29 -5.87 -37.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597327553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.417 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds