Wall clock time and date at job start Mon Mar 30 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 N 1.31129 * 126.55299 * 90.25728 * 3 2 1 5 5 C 1.34494 * 105.61311 * 180.12106 * 4 3 2 6 6 C 1.50701 * 126.28657 * 179.90236 * 5 4 3 7 7 N 1.46505 * 109.47101 * 269.70963 * 6 5 4 8 8 C 1.36941 * 119.99915 * 88.59387 * 7 6 5 9 9 H 1.07998 * 120.00093 * 34.22315 * 8 7 6 10 10 C 1.38810 * 119.99923 * 213.94877 * 8 7 6 11 11 N 1.31619 * 120.00002 * 23.05160 * 10 8 7 12 12 Si 1.86791 * 119.99879 * 203.05552 * 10 8 7 13 13 H 1.48500 * 109.47223 * 90.00183 * 12 10 8 14 14 H 1.48500 * 109.47072 * 209.99572 * 12 10 8 15 15 H 1.48498 * 109.47447 * 329.99767 * 12 10 8 16 16 C 1.46496 * 119.99746 * 268.59667 * 7 6 5 17 17 C 1.53009 * 109.47004 * 269.99436 * 16 7 6 18 18 O 1.42906 * 109.46425 * 65.00347 * 17 16 7 19 19 C 1.42909 * 113.99363 * 179.97438 * 18 17 16 20 20 N 1.29943 * 107.42592 * 359.63481 * 5 4 3 21 21 O 1.21298 * 110.25087 * 0.23186 * 20 5 4 22 22 H 1.09000 * 109.46714 * 59.99854 * 1 2 3 23 23 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46891 * 300.00020 * 1 2 3 25 25 H 1.08997 * 109.46891 * 239.99980 * 2 1 3 26 26 H 1.09000 * 109.47070 * 119.99737 * 2 1 3 27 27 H 1.09004 * 109.47446 * 149.70997 * 6 5 4 28 28 H 1.09005 * 109.47345 * 29.70754 * 6 5 4 29 29 H 0.97002 * 120.00350 * 180.02562 * 11 10 8 30 30 H 1.08991 * 109.47311 * 29.99755 * 16 7 6 31 31 H 1.09007 * 109.47110 * 150.00347 * 16 7 6 32 32 H 1.09000 * 109.47189 * 185.00255 * 17 16 7 33 33 H 1.09000 * 109.47323 * 305.00651 * 17 16 7 34 34 H 1.08999 * 109.47067 * 299.99996 * 19 18 17 35 35 H 1.08999 * 109.46976 * 60.00366 * 19 18 17 36 36 H 1.08998 * 109.46893 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2971 2.1555 1.0534 5 6 2.7112 3.3415 0.5727 6 6 3.1340 4.5360 1.3885 7 7 1.9689 5.3840 1.6527 8 6 1.1933 5.1569 2.7582 9 1 1.6467 4.8042 3.6728 10 6 -0.1749 5.3853 2.7050 11 7 -0.7996 5.3729 1.5465 12 14 -1.1293 5.7104 4.2774 13 1 -1.1476 7.1695 4.5526 14 1 -2.5219 5.2187 4.1217 15 1 -0.4775 5.0015 5.4077 16 6 1.6336 6.4749 0.7342 17 6 2.3450 7.7540 1.1803 18 8 3.7583 7.5795 1.0602 19 6 4.5205 8.7226 1.4534 20 7 2.6852 3.2662 -0.7243 21 8 2.2981 2.1710 -1.0736 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8811 5.1067 0.8369 28 1 3.5594 4.1984 2.3336 29 1 -1.7556 5.5329 1.5092 30 1 1.9551 6.2130 -0.2737 31 1 0.5558 6.6375 0.7411 32 1 2.0268 8.5851 0.5510 33 1 2.0922 7.9670 2.2190 34 1 4.2473 9.5736 0.8294 35 1 4.3128 8.9562 2.4976 36 1 5.5827 8.5101 1.3325 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687015976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:37 Heat of formation + Delta-G solvation = 38.010745 kcal Electronic energy + Delta-G solvation = -19562.999380 eV Core-core repulsion = 16472.629767 eV Total energy + Delta-G solvation = -3090.369613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.64303 -37.39566 -35.82313 -34.93526 -33.86215 -31.44994 -30.31967 -29.08841 -26.52492 -25.68028 -24.40180 -23.50434 -22.43014 -20.83998 -19.94311 -17.28466 -16.82353 -16.59580 -15.66324 -15.24136 -14.92881 -14.75010 -14.23308 -14.13799 -13.65980 -13.38295 -13.10695 -12.66793 -11.99396 -11.81028 -11.56944 -11.44316 -11.22786 -11.12997 -10.95661 -10.80619 -10.69320 -10.59196 -10.20506 -10.02663 -9.98329 -9.95262 -9.05621 -8.94627 -8.58099 -6.77624 -5.87064 -3.40703 1.98791 3.19865 3.34192 3.40968 3.43669 3.54130 4.44254 4.46863 4.57193 5.02618 5.24836 5.26666 5.27434 5.41550 5.52697 5.68327 5.73926 5.81551 5.96226 5.98937 6.06531 6.16853 6.29602 6.34307 6.42274 6.56483 6.69241 6.78087 6.94471 6.98782 7.51682 7.78496 7.90523 8.39983 9.07783 9.13420 9.69771 10.27709 11.14278 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.008587 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.010329 B = 3259.940862 C = 4655.374781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.020 4.020 3 C 0.149 3.851 4 N -0.464 5.464 5 C 0.181 3.819 6 C 0.226 3.774 7 N -0.558 5.558 8 C -0.252 4.252 9 H 0.069 0.931 10 C 0.009 3.991 11 N -0.887 5.887 12 Si 0.902 3.098 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.276 1.276 16 C 0.143 3.857 17 C 0.046 3.954 18 O -0.386 6.386 19 C 0.033 3.967 20 N -0.399 5.399 21 O 0.056 5.944 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.256 0.744 30 H 0.035 0.965 31 H 0.115 0.885 32 H 0.030 0.970 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -4.129 -2.715 7.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 C -0.073 4.073 4 N -0.198 5.198 5 C -0.095 4.095 6 C 0.096 3.904 7 N -0.277 5.277 8 C -0.382 4.382 9 H 0.087 0.913 10 C -0.191 4.191 11 N -0.530 5.530 12 Si 0.731 3.269 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.201 1.201 16 C 0.017 3.983 17 C -0.032 4.032 18 O -0.305 6.305 19 C -0.064 4.064 20 N -0.111 5.111 21 O 0.002 5.998 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.132 0.868 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.258 -3.521 -2.900 6.961 hybrid contribution -0.950 0.378 0.754 1.270 sum 4.308 -3.143 -2.146 5.749 Atomic orbital electron populations 1.21766 0.93012 1.02415 1.03662 1.19978 0.96972 0.84306 1.04706 1.28681 0.98495 0.98307 0.81774 1.71868 1.16357 1.03029 1.28521 1.27867 0.97614 0.95904 0.88141 1.19667 0.91353 0.84096 0.95293 1.43964 1.29235 1.28257 1.26249 1.19203 0.88107 1.42020 0.88879 0.91328 1.25159 0.96488 1.00857 0.96583 1.69975 1.08668 1.50438 1.23932 0.86295 0.79038 0.78221 0.83338 1.21299 1.21760 1.20056 1.21220 1.01372 0.84644 0.91089 1.23466 0.79876 1.00071 0.99816 1.87932 1.18738 1.36599 1.87201 1.22606 0.96224 0.89379 0.98200 1.74527 1.20398 0.99353 1.16803 1.85178 1.60726 1.17939 1.35991 0.92060 0.91242 0.91351 0.89016 0.88016 0.90577 0.91005 0.93432 0.94670 0.86834 0.95222 0.93348 0.95226 0.94764 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.90 37.16 0.37 -1.51 16 2 C -0.02 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C 0.15 2.78 7.77 -13.06 -0.10 2.68 16 4 N -0.46 -10.38 11.55 -9.87 -0.11 -10.49 16 5 C 0.18 4.24 7.80 -156.38 -1.22 3.02 16 6 C 0.23 5.24 6.10 -5.19 -0.03 5.20 16 7 N -0.56 -14.22 2.40 -174.60 -0.42 -14.64 16 8 C -0.25 -6.89 9.49 -15.06 -0.14 -7.03 16 9 H 0.07 1.88 7.93 -52.49 -0.42 1.47 16 10 C 0.01 0.25 4.95 -17.43 -0.09 0.17 16 11 N -0.89 -25.45 11.32 55.49 0.63 -24.82 16 12 Si 0.90 21.51 29.61 -169.99 -5.03 16.47 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.14 3.48 5.69 -4.04 -0.02 3.46 16 17 C 0.05 0.96 6.28 37.16 0.23 1.19 16 18 O -0.39 -7.66 9.55 -35.23 -0.34 -7.99 16 19 C 0.03 0.50 11.01 101.05 1.11 1.61 16 20 N -0.40 -9.16 12.16 30.89 0.38 -8.78 16 21 O 0.06 1.13 11.31 18.10 0.20 1.34 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.69 7.14 -51.93 -0.37 1.32 16 28 H 0.07 1.61 8.05 -51.93 -0.42 1.19 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.11 3.05 5.32 -51.93 -0.28 2.78 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -31.96 310.99 -5.34 -37.30 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.26 Total: -1.43 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.07 Total: 8.36 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.47 Total: -58.74 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.13 Total: -6.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.96 -5.34 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687015976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.315 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds