Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99570 * 2 1 4 4 H 1.48502 * 109.47246 * 239.99834 * 3 2 1 5 5 H 1.48496 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47077 * 120.00317 * 3 2 1 7 7 C 1.37869 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47460 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00302 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00208 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.46950 * 180.02562 * 13 11 10 15 15 C 1.47250 * 119.94729 * 269.97359 * 14 13 11 16 16 C 1.53062 * 108.56722 * 250.71298 * 15 14 13 17 17 N 1.45566 * 110.84787 * 274.27215 * 16 15 14 18 18 C 1.45588 * 116.01680 * 68.45296 * 17 16 15 19 19 C 1.53142 * 110.68619 * 291.77322 * 18 17 16 20 20 C 1.33633 * 119.94513 * 90.00306 * 14 13 11 21 21 O 1.21281 * 120.05603 * 359.69085 * 20 14 13 22 22 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46997 * 59.99715 * 9 7 2 24 24 H 1.08998 * 109.47306 * 300.00499 * 9 7 2 25 25 H 0.97003 * 119.99321 * 0.02562 * 10 9 7 26 26 H 1.08999 * 109.46844 * 60.00133 * 13 11 10 27 27 H 1.08998 * 109.47055 * 300.00005 * 13 11 10 28 28 H 1.09004 * 109.62174 * 130.99005 * 15 14 13 29 29 H 1.09007 * 109.62243 * 10.43907 * 15 14 13 30 30 H 1.08996 * 109.20378 * 153.92026 * 16 15 14 31 31 H 1.08996 * 109.19747 * 34.62228 * 16 15 14 32 32 H 1.00896 * 110.99657 * 196.36188 * 17 16 15 33 33 H 1.08994 * 109.23861 * 52.08550 * 18 17 16 34 34 H 1.08994 * 109.23088 * 171.46985 * 18 17 16 35 35 H 1.09000 * 109.68181 * 203.86731 * 19 18 17 36 36 H 1.09003 * 109.68759 * 324.43063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5616 -5.1050 -0.0006 13 6 2.7333 -6.0287 -0.0022 14 7 2.0008 -7.2975 -0.0023 15 6 1.6343 -7.9347 1.2736 16 6 2.4912 -9.1899 1.4553 17 7 1.8836 -10.3329 0.7894 18 6 1.8628 -10.2873 -0.6656 19 6 0.9152 -9.1901 -1.1590 20 6 1.6670 -7.8748 -1.1603 21 8 1.9649 -7.3466 -2.2105 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4352 -0.0021 26 1 3.3606 -5.9709 0.8874 27 1 3.3594 -5.9709 -0.8926 28 1 0.5799 -8.2109 1.2552 29 1 1.8199 -7.2427 2.0951 30 1 2.5899 -9.4057 2.5191 31 1 3.4802 -9.0129 1.0329 32 1 2.2848 -11.1982 1.1183 33 1 2.8687 -10.0849 -1.0331 34 1 1.5278 -11.2506 -1.0502 35 1 0.5796 -9.4221 -2.1698 36 1 0.0552 -9.1207 -0.4929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688489084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -66.584434 kcal Electronic energy + Delta-G solvation = -19097.500329 eV Core-core repulsion = 16002.595128 eV Total energy + Delta-G solvation = -3094.905200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45128 -38.45807 -37.02664 -34.94934 -34.08258 -32.32658 -31.47951 -29.72589 -27.54352 -26.01906 -24.34198 -22.54728 -21.47827 -19.95993 -18.86106 -17.44072 -17.18082 -17.10506 -15.93460 -15.73801 -15.14761 -14.89644 -14.57191 -14.49576 -14.04323 -13.69640 -13.48982 -12.87324 -12.72178 -12.39489 -12.15027 -11.94584 -11.85226 -11.60214 -11.44648 -11.28781 -10.99068 -10.84758 -10.31211 -9.70134 -9.45134 -9.39901 -8.80031 -8.72072 -8.43888 -7.87253 -6.15061 -4.22297 2.70129 2.97769 3.26289 3.31024 3.32683 3.35887 3.75512 4.16535 4.39671 4.41094 4.72836 4.87766 4.92888 5.05114 5.12784 5.20270 5.21811 5.33188 5.40445 5.55493 5.57490 5.59577 5.77277 5.91576 6.39035 6.75687 7.01463 7.31540 7.42795 7.44356 7.53540 7.67265 7.98310 8.26811 8.63010 8.78876 9.10281 9.44198 10.95153 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.050428 B = 0.003990 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.111164 B = 7015.979890 C = 7134.330434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.711 5.711 11 C 0.483 3.517 12 O -0.548 6.548 13 C 0.091 3.909 14 N -0.591 5.591 15 C 0.113 3.887 16 C 0.052 3.948 17 N -0.713 5.713 18 C 0.080 3.920 19 C -0.137 4.137 20 C 0.518 3.482 21 O -0.545 6.545 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.390 0.610 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.351 0.649 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -20.380 3.985 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.360 5.360 11 C 0.266 3.734 12 O -0.426 6.426 13 C -0.035 4.035 14 N -0.323 5.323 15 C -0.010 4.010 16 C -0.078 4.078 17 N -0.347 5.347 18 C -0.049 4.049 19 C -0.177 4.177 20 C 0.306 3.694 21 O -0.423 6.423 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.223 0.777 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.171 0.829 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.733 -19.816 3.447 20.915 hybrid contribution 1.704 0.965 -0.070 1.959 sum 7.436 -18.852 3.377 20.545 Atomic orbital electron populations 1.69967 1.06131 1.27414 1.48809 1.24953 0.94915 0.99455 0.94683 0.86464 0.79404 0.82284 0.78685 1.20040 1.21064 1.20069 1.21193 0.93237 0.90461 1.53340 0.91917 1.19090 0.88297 0.81909 0.97671 1.46431 1.11117 1.06052 1.72444 1.20885 0.89982 0.84688 0.77855 1.90652 1.16730 1.84795 1.50445 1.21417 0.94199 0.83021 1.04890 1.47484 1.56703 1.21424 1.06723 1.21933 1.00416 0.93315 0.85316 1.22105 0.95705 0.90830 0.99196 1.57795 1.64123 1.05462 1.07299 1.21434 0.97725 0.98822 0.86965 1.22092 0.99490 0.91734 1.04428 1.20628 0.78999 0.86703 0.83092 1.90717 1.54751 1.65591 1.31207 0.92388 0.95618 0.95588 0.77724 0.88045 0.87469 0.89297 0.89033 0.89404 0.94553 0.82917 0.94978 0.89645 0.88067 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 10 N -0.71 -15.37 5.55 -61.47 -0.34 -15.71 16 11 C 0.48 10.00 7.90 -10.99 -0.09 9.91 16 12 O -0.55 -13.71 16.43 5.56 0.09 -13.62 16 13 C 0.09 1.37 5.82 -5.19 -0.03 1.34 16 14 N -0.59 -8.49 1.96 -174.40 -0.34 -8.84 16 15 C 0.11 1.22 5.93 -3.60 -0.02 1.20 16 16 C 0.05 0.40 6.36 -4.51 -0.03 0.37 16 17 N -0.71 -5.30 6.34 -115.64 -0.73 -6.04 16 18 C 0.08 0.68 6.30 -4.46 -0.03 0.65 16 19 C -0.14 -1.57 5.62 -27.42 -0.15 -1.72 16 20 C 0.52 8.25 6.82 -11.10 -0.08 8.18 16 21 O -0.55 -11.03 16.65 5.56 0.09 -10.93 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 26 H 0.10 1.11 8.03 -51.93 -0.42 0.69 16 27 H 0.11 1.61 7.40 -51.93 -0.38 1.23 16 28 H 0.09 1.03 7.02 -51.93 -0.36 0.66 16 29 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.31 8.05 -51.93 -0.42 -0.11 16 32 H 0.35 1.82 8.88 -39.29 -0.35 1.47 16 33 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.15 7.07 -51.93 -0.37 0.78 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -36.40 303.18 -6.93 -43.32 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.11 Total: 3.88 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.87 Total: 13.09 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.68 Total: -56.38 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.18 Total: -24.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.40 -6.93 -43.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688489084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.260 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds