Wall clock time and date at job start Mon Mar 30 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99570 * 2 1 4 4 H 1.48502 * 109.47246 * 239.99834 * 3 2 1 5 5 H 1.48496 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47077 * 120.00317 * 3 2 1 7 7 C 1.37869 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47460 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00302 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00208 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.46950 * 180.02562 * 13 11 10 15 15 C 1.47250 * 119.94729 * 269.97359 * 14 13 11 16 16 C 1.53062 * 108.56722 * 250.71298 * 15 14 13 17 17 N 1.45566 * 110.84787 * 274.27215 * 16 15 14 18 18 C 1.45588 * 116.01680 * 68.45296 * 17 16 15 19 19 C 1.53142 * 110.68619 * 291.77322 * 18 17 16 20 20 C 1.33633 * 119.94513 * 90.00306 * 14 13 11 21 21 O 1.21281 * 120.05603 * 359.69085 * 20 14 13 22 22 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46997 * 59.99715 * 9 7 2 24 24 H 1.08998 * 109.47306 * 300.00499 * 9 7 2 25 25 H 0.97003 * 119.99321 * 0.02562 * 10 9 7 26 26 H 1.08999 * 109.46844 * 60.00133 * 13 11 10 27 27 H 1.08998 * 109.47055 * 300.00005 * 13 11 10 28 28 H 1.09004 * 109.62174 * 130.99005 * 15 14 13 29 29 H 1.09007 * 109.62243 * 10.43907 * 15 14 13 30 30 H 1.08996 * 109.20378 * 153.92026 * 16 15 14 31 31 H 1.08996 * 109.19747 * 34.62228 * 16 15 14 32 32 H 1.00896 * 110.99657 * 196.36188 * 17 16 15 33 33 H 1.08994 * 109.23861 * 52.08550 * 18 17 16 34 34 H 1.08994 * 109.23088 * 171.46985 * 18 17 16 35 35 H 1.09000 * 109.68181 * 203.86731 * 19 18 17 36 36 H 1.09003 * 109.68759 * 324.43063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5616 -5.1050 -0.0006 13 6 2.7333 -6.0287 -0.0022 14 7 2.0008 -7.2975 -0.0023 15 6 1.6343 -7.9347 1.2736 16 6 2.4912 -9.1899 1.4553 17 7 1.8836 -10.3329 0.7894 18 6 1.8628 -10.2873 -0.6656 19 6 0.9152 -9.1901 -1.1590 20 6 1.6670 -7.8748 -1.1603 21 8 1.9649 -7.3466 -2.2105 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1568 -3.4352 -0.0021 26 1 3.3606 -5.9709 0.8874 27 1 3.3594 -5.9709 -0.8926 28 1 0.5799 -8.2109 1.2552 29 1 1.8199 -7.2427 2.0951 30 1 2.5899 -9.4057 2.5191 31 1 3.4802 -9.0129 1.0329 32 1 2.2848 -11.1982 1.1183 33 1 2.8687 -10.0849 -1.0331 34 1 1.5278 -11.2506 -1.0502 35 1 0.5796 -9.4221 -2.1698 36 1 0.0552 -9.1207 -0.4929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688489084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:04 Heat of formation + Delta-G solvation = -97.091368 kcal Electronic energy + Delta-G solvation = -19098.823208 eV Core-core repulsion = 16002.595128 eV Total energy + Delta-G solvation = -3096.228080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65825 -40.12687 -37.98909 -36.31495 -35.81247 -34.39312 -32.34634 -31.00699 -29.21690 -27.39335 -25.31522 -24.48756 -22.27284 -21.65540 -20.11538 -19.02428 -18.37025 -18.10631 -17.63008 -17.15487 -16.60770 -16.25055 -15.99069 -15.83072 -15.55312 -14.77213 -14.54050 -14.37487 -14.18232 -14.01384 -13.62025 -13.35427 -12.97001 -12.90680 -12.70548 -12.66233 -12.29876 -12.25298 -12.11762 -11.54370 -11.16147 -10.87461 -10.81654 -9.88836 -9.84005 -9.32825 -8.31036 -6.48620 1.41312 1.46260 1.46475 1.54850 1.68355 1.88440 2.33401 2.65131 3.03576 3.16710 3.45428 3.89372 3.99777 4.06797 4.16146 4.23546 4.30512 4.32853 4.38695 4.54905 4.81797 4.88595 4.97201 5.05322 5.08995 5.19010 5.32606 5.44565 5.65561 5.81374 6.07784 6.34800 6.58053 6.61821 6.82764 7.07885 7.20648 7.43140 8.81135 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.050428 B = 0.003990 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.111164 B = 7015.979890 C = 7134.330434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.705 5.705 11 C 0.478 3.522 12 O -0.597 6.597 13 C 0.102 3.898 14 N -0.592 5.592 15 C 0.106 3.894 16 C 0.061 3.939 17 N -0.714 5.714 18 C 0.088 3.912 19 C -0.132 4.132 20 C 0.503 3.497 21 O -0.600 6.600 22 H 0.269 0.731 23 H -0.022 1.022 24 H -0.009 1.009 25 H 0.410 0.590 26 H 0.153 0.847 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.036 0.964 32 H 0.368 0.632 33 H 0.024 0.976 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -21.351 5.272 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.356 5.356 11 C 0.264 3.736 12 O -0.479 6.479 13 C -0.024 4.024 14 N -0.322 5.322 15 C -0.016 4.016 16 C -0.069 4.069 17 N -0.350 5.350 18 C -0.041 4.041 19 C -0.172 4.172 20 C 0.293 3.707 21 O -0.481 6.481 22 H 0.078 0.922 23 H -0.004 1.004 24 H 0.009 0.991 25 H 0.246 0.754 26 H 0.171 0.829 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.054 0.946 32 H 0.191 0.809 33 H 0.042 0.958 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.205 -20.851 4.784 22.912 hybrid contribution 0.869 1.214 -0.453 1.560 sum 9.074 -19.637 4.330 22.061 Atomic orbital electron populations 1.70139 1.08385 1.28701 1.49850 1.26109 0.95788 1.04053 0.93717 0.85170 0.77882 0.76360 0.79574 1.18839 1.21060 1.18252 1.21599 0.94385 0.90483 1.53138 0.89613 1.18517 0.88702 0.84461 0.93803 1.46168 1.11293 1.05429 1.72686 1.22018 0.90403 0.85459 0.75738 1.90625 1.19408 1.85525 1.52307 1.21449 0.92720 0.80822 1.07430 1.47753 1.55934 1.20783 1.07778 1.22231 1.00610 0.94971 0.83807 1.22032 0.94568 0.89390 1.00945 1.57734 1.64385 1.06273 1.06572 1.21380 0.96387 0.98636 0.87730 1.22137 0.99645 0.90492 1.04950 1.21523 0.78512 0.87908 0.82712 1.90679 1.57050 1.67285 1.33114 0.92208 1.00405 0.99141 0.75417 0.82903 0.87154 0.90384 0.87924 0.86450 0.94606 0.80896 0.95790 0.86963 0.87890 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.44 0.28 -57.13 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.84 29.54 68.60 2.03 44.87 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.56 -31.03 9.28 25.60 0.24 -30.79 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.25 5.43 85.63 0.46 15.72 16 10 N -0.71 -30.89 5.55 -466.78 -2.59 -33.48 16 11 C 0.48 20.07 7.90 87.66 0.69 20.77 16 12 O -0.60 -31.16 16.43 -3.03 -0.05 -31.21 16 13 C 0.10 2.93 5.82 85.63 0.50 3.43 16 14 N -0.59 -16.48 1.96 -824.71 -1.62 -18.10 16 15 C 0.11 2.08 5.93 86.26 0.51 2.59 16 16 C 0.06 0.74 6.36 86.58 0.55 1.29 16 17 N -0.71 -8.39 6.34 -519.77 -3.30 -11.69 16 18 C 0.09 1.29 6.30 86.60 0.55 1.83 16 19 C -0.13 -2.93 5.62 30.15 0.17 -2.76 16 20 C 0.50 16.11 6.82 88.09 0.60 16.71 16 21 O -0.60 -24.95 16.65 -3.03 -0.05 -25.00 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H -0.02 -1.44 8.14 -2.38 -0.02 -1.46 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H 0.41 14.55 8.32 -92.71 -0.77 13.77 16 26 H 0.15 2.81 8.03 -2.39 -0.02 2.79 16 27 H 0.11 3.19 7.40 -2.39 -0.02 3.18 16 28 H 0.08 1.73 7.02 -2.39 -0.02 1.71 16 29 H 0.10 1.78 7.92 -2.38 -0.02 1.76 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.48 8.05 -2.39 -0.02 0.46 16 32 H 0.37 2.41 8.88 -89.70 -0.80 1.62 16 33 H 0.02 0.40 7.87 -2.39 -0.02 0.38 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 2.26 7.07 -2.39 -0.02 2.24 16 Total: -1.00 -84.01 303.18 -1.03 -85.03 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.46 Total: 17.30 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: 4.73 Total: 29.41 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -7.22 Total: -120.40 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.10 Total: -56.21 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -84.01 -1.03 -85.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688489084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.057 kcal (2) G-P(sol) polarization free energy of solvation -84.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds