Wall clock time and date at job start Mon Mar 30 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46700 * 2 1 4 4 C 1.46769 * 124.34688 * 269.99994 * 3 2 1 5 5 C 1.54485 * 105.47030 * 197.03928 * 4 3 2 6 6 C 1.54627 * 101.76594 * 334.58477 * 5 4 3 7 7 H 1.09005 * 110.48027 * 143.47533 * 6 5 4 8 8 N 1.46898 * 110.48364 * 266.11724 * 6 5 4 9 9 C 1.46904 * 110.99930 * 204.99988 * 8 6 5 10 10 C 1.50700 * 109.47222 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99790 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99990 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00010 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00012 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00138 * 179.97438 * 13 12 10 16 16 N 1.31404 * 120.00183 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47047 * 89.99791 * 17 15 13 19 19 H 1.48506 * 109.47001 * 209.99755 * 17 15 13 20 20 H 1.48507 * 109.47101 * 329.99662 * 17 15 13 21 21 C 1.34417 * 124.35146 * 90.03014 * 3 2 1 22 22 O 1.21279 * 124.94464 * 359.59579 * 21 3 2 23 23 H 1.09004 * 109.46616 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46931 * 299.99786 * 1 2 3 25 25 H 1.08992 * 109.46939 * 59.99992 * 1 2 3 26 26 H 1.08994 * 109.46961 * 239.99989 * 2 1 3 27 27 H 1.08997 * 109.47044 * 119.99298 * 2 1 3 28 28 H 1.08998 * 110.24703 * 78.04283 * 4 3 2 29 29 H 1.08997 * 110.24528 * 316.03524 * 4 3 2 30 30 H 1.09000 * 110.96819 * 216.46072 * 5 4 3 31 31 H 1.08997 * 110.96657 * 92.70464 * 5 4 3 32 32 H 1.00902 * 110.99935 * 81.04815 * 8 6 5 33 33 H 1.09001 * 109.47350 * 300.00371 * 9 8 6 34 34 H 1.09000 * 109.47016 * 60.00352 * 9 8 6 35 35 H 0.97006 * 119.99877 * 359.97438 * 12 10 9 36 36 H 0.96998 * 120.00422 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 -1.2118 5 6 3.1748 3.3439 -0.7488 6 6 2.7702 3.4752 0.7378 7 1 3.6337 3.7455 1.3456 8 7 1.6991 4.4685 0.8932 9 6 1.7033 5.0397 2.2466 10 6 0.5931 6.0516 2.3682 11 8 -0.1307 6.2746 1.4208 12 7 0.4045 6.7087 3.5297 13 6 -0.6057 7.6289 3.6405 14 1 -1.2507 7.8268 2.7972 15 6 -0.8005 8.3060 4.8381 16 7 -1.7685 9.1883 4.9441 17 14 0.3147 7.9631 6.2970 18 1 1.4813 8.8810 6.2548 19 1 -0.4395 8.1787 7.5580 20 1 0.7888 6.5569 6.2379 21 6 2.2716 2.0962 1.1097 22 8 2.1227 1.6941 2.2442 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.3636 2.5311 -1.6428 29 1 2.8320 1.5531 -1.9385 30 1 2.9312 4.2515 -1.3011 31 1 4.2334 3.1028 -0.8452 32 1 0.7997 4.0679 0.6726 33 1 1.5516 4.2449 2.9770 34 1 2.6608 5.5262 2.4327 35 1 0.9832 6.5301 4.2875 36 1 -1.9047 9.6607 5.7803 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708919977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:04 Heat of formation + Delta-G solvation = -60.097558 kcal Electronic energy + Delta-G solvation = -18987.733183 eV Core-core repulsion = 15893.109275 eV Total energy + Delta-G solvation = -3094.623908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72528 -38.36399 -36.57347 -35.52609 -33.94262 -32.72036 -31.62511 -29.38580 -27.74727 -25.76239 -23.80400 -23.54806 -21.54839 -19.60417 -19.34797 -18.36471 -17.03570 -16.60425 -16.19508 -15.61707 -14.96301 -14.82169 -14.28891 -14.02482 -13.88566 -13.67260 -13.56673 -13.05309 -12.95926 -12.56067 -12.43524 -12.11222 -12.04167 -11.85611 -11.48324 -11.30363 -11.22705 -11.13884 -10.55696 -10.23884 -9.95028 -9.54789 -8.91348 -8.59957 -8.20910 -8.14672 -6.28844 -3.80178 2.41770 2.81516 3.07393 3.10853 3.18406 3.76224 4.00738 4.13502 4.20966 4.37204 4.74159 4.80239 4.88469 4.94942 5.00799 5.14178 5.25547 5.26322 5.40350 5.47957 5.64150 5.66263 5.74042 5.84356 5.90940 5.95616 5.98309 6.38331 6.90203 6.93129 7.35509 7.59922 8.04227 8.16221 8.61706 8.96777 9.44758 9.84248 10.84191 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.004493 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.244608 B = 6230.329235 C = 6326.566384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.100 3.900 5 C -0.124 4.124 6 C 0.056 3.944 7 H 0.111 0.889 8 N -0.635 5.635 9 C 0.040 3.960 10 C 0.452 3.548 11 O -0.567 6.567 12 N -0.589 5.589 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.881 5.881 17 Si 0.878 3.122 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.485 3.515 22 O -0.529 6.529 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.353 0.647 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.371 0.629 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 -16.576 -10.187 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.058 4.058 7 H 0.129 0.871 8 N -0.268 5.268 9 C -0.092 4.092 10 C 0.237 3.763 11 O -0.449 6.449 12 N -0.228 5.228 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.521 5.521 17 Si 0.705 3.295 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.194 1.194 21 C 0.271 3.729 22 O -0.403 6.403 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.173 0.827 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.204 0.796 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.208 -16.033 -10.353 22.133 hybrid contribution 0.334 -0.961 1.776 2.047 sum 11.542 -16.993 -8.577 22.261 Atomic orbital electron populations 1.22172 0.95654 1.02303 1.02841 1.21339 0.94553 0.81299 1.02839 1.48402 1.65718 1.13670 1.07632 1.22172 1.00093 0.92870 0.87134 1.22691 0.99512 0.99108 0.94928 1.22462 0.97306 0.87641 0.98405 0.87100 1.60416 1.07784 1.32242 1.26354 1.21869 1.00008 0.97521 0.89808 1.19619 0.87459 0.85193 0.83994 1.90559 1.48711 1.67610 1.38033 1.42190 1.31040 1.37979 1.11592 1.19432 1.08459 1.14595 1.00885 0.86260 1.25027 0.96976 0.96347 0.97718 1.69617 1.30278 1.25239 1.26999 0.86684 0.81099 0.78762 0.82983 1.19531 1.20159 1.19403 1.22101 0.77636 0.88635 0.84576 1.90721 1.53319 1.75116 1.21177 0.91492 0.92094 0.92216 0.90459 0.90248 0.90728 0.90449 0.87541 0.89756 0.82701 0.92570 0.88990 0.79587 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.12 1.10 6.65 -4.04 -0.03 1.08 16 3 N -0.62 -6.62 2.93 -172.41 -0.51 -7.13 16 4 C 0.10 0.80 7.35 -3.12 -0.02 0.78 16 5 C -0.12 -1.05 6.89 -25.10 -0.17 -1.22 16 6 C 0.06 0.68 3.26 -67.72 -0.22 0.46 16 7 H 0.11 1.27 7.83 -51.93 -0.41 0.86 16 8 N -0.64 -9.97 5.94 -108.00 -0.64 -10.61 16 9 C 0.04 0.71 6.02 -4.97 -0.03 0.68 16 10 C 0.45 10.58 7.82 -10.99 -0.09 10.49 16 11 O -0.57 -15.41 15.78 5.54 0.09 -15.33 16 12 N -0.59 -14.49 5.09 -10.96 -0.06 -14.55 16 13 C -0.31 -8.81 10.16 -14.93 -0.15 -8.96 16 14 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 15 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 16 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 17 Si 0.88 19.86 27.74 -169.99 -4.71 15.15 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.64 6.52 56.52 0.37 -5.27 16 21 C 0.49 6.76 7.35 -10.86 -0.08 6.68 16 22 O -0.53 -9.46 17.57 5.56 0.10 -9.37 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.35 5.99 8.14 -39.29 -0.32 5.67 16 33 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 34 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 35 H 0.37 8.11 5.76 -40.82 -0.24 7.88 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -34.95 307.59 -5.98 -40.93 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.15 Total: 11.71 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.51 Total: 9.87 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.43 Total: -57.61 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.19 Total: -24.69 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.95 -5.98 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.166 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds