Wall clock time and date at job start Mon Mar 30 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 C 1.50699 * 109.47331 * 120.00215 * 2 1 3 5 5 O 1.21285 * 119.99663 * 336.49528 * 4 2 1 6 6 N 1.34774 * 120.00593 * 156.49861 * 4 2 1 7 7 C 1.47429 * 125.64412 * 354.76820 * 6 4 2 8 8 C 1.54902 * 104.83069 * 155.89291 * 7 6 4 9 9 C 1.55155 * 101.58259 * 37.01302 * 8 7 6 10 10 C 1.47017 * 125.65213 * 174.79828 * 6 4 2 11 11 H 1.08996 * 109.88234 * 300.45121 * 10 6 4 12 12 C 1.50695 * 110.01191 * 61.54726 * 10 6 4 13 13 O 1.21211 * 120.00207 * 359.59939 * 12 10 6 14 14 O 1.34314 * 120.00213 * 179.60563 * 12 10 6 15 15 C 1.34920 * 117.00291 * 179.97438 * 14 12 10 16 16 H 1.07998 * 119.99845 * 359.97438 * 15 14 12 17 17 C 1.38753 * 119.99702 * 179.97438 * 15 14 12 18 18 N 1.31436 * 120.00329 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46968 * 60.00124 * 19 17 15 21 21 H 1.48495 * 109.47088 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46982 * 300.00038 * 19 17 15 23 23 H 1.09002 * 109.46656 * 299.99987 * 1 2 3 24 24 H 1.08995 * 109.47408 * 59.99774 * 1 2 3 25 25 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47170 * 240.00079 * 2 1 3 27 27 H 1.09004 * 109.47620 * 52.80564 * 3 2 1 28 28 H 1.09007 * 109.47615 * 172.80524 * 3 2 1 29 29 H 1.09006 * 109.47410 * 292.80442 * 3 2 1 30 30 H 1.08997 * 110.36431 * 37.05468 * 7 6 4 31 31 H 1.08999 * 110.46226 * 274.78127 * 7 6 4 32 32 H 1.08997 * 111.01025 * 278.93408 * 8 7 6 33 33 H 1.09008 * 111.00412 * 155.08470 * 8 7 6 34 34 H 1.09005 * 110.72358 * 206.13400 * 9 8 7 35 35 H 1.09002 * 110.72279 * 82.85865 * 9 8 7 36 36 H 0.97007 * 120.00196 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.3264 -0.7941 2.2130 6 7 3.2661 -1.2528 1.2390 7 6 4.1830 -1.3203 0.0864 8 6 5.5967 -1.4289 0.7102 9 6 5.3242 -2.3281 1.9449 10 6 3.9204 -1.8756 2.3990 11 1 4.0082 -1.1509 3.2083 12 6 3.1228 -3.0672 2.8626 13 8 2.0988 -3.3712 2.2897 14 8 3.5466 -3.7925 3.9107 15 6 2.7860 -4.8458 4.2744 16 1 1.8814 -5.0723 3.7297 17 6 3.1660 -5.6378 5.3485 18 7 4.2666 -5.3617 6.0118 19 14 2.1125 -7.0957 5.8526 20 1 2.0142 -8.0506 4.7196 21 1 2.7315 -7.7737 7.0197 22 1 0.7539 -6.6214 6.2195 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.5754 1.9922 0.8186 28 1 3.1224 1.4452 0.1287 29 1 1.7856 1.9178 -0.9474 30 1 4.1025 -0.4154 -0.5158 31 1 3.9677 -2.1996 -0.5207 32 1 5.9660 -0.4494 1.0141 33 1 6.2915 -1.9104 0.0220 34 1 6.0607 -2.1430 2.7269 35 1 5.3172 -3.3806 1.6615 36 1 4.5321 -5.9153 6.7629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748375386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:15 Heat of formation + Delta-G solvation = -144.977932 kcal Electronic energy + Delta-G solvation = -19762.095491 eV Core-core repulsion = 16631.498143 eV Total energy + Delta-G solvation = -3130.597349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.79549 -40.47499 -38.52368 -37.08531 -35.43541 -34.34682 -32.54393 -30.86617 -28.06628 -27.52788 -25.77284 -23.98571 -22.66947 -21.60397 -19.91577 -19.78827 -18.84880 -18.32668 -17.24610 -16.75809 -16.41277 -16.23715 -15.91256 -15.45263 -14.97131 -14.56175 -14.29014 -14.00158 -13.78348 -13.64687 -13.43265 -13.28049 -13.01221 -12.84579 -12.71951 -12.36076 -12.23363 -12.19827 -12.09306 -12.06090 -11.91659 -11.78360 -11.04461 -10.76456 -10.72986 -9.78776 -8.57245 -6.37416 1.27465 1.27960 1.42903 1.56525 1.61474 1.88221 2.13764 2.76522 2.92033 3.40677 3.59698 3.70576 3.92449 4.00955 4.08665 4.16309 4.42805 4.46706 4.61970 4.68989 4.75290 4.82877 4.85450 4.88057 4.90711 5.02469 5.08274 5.09595 5.22340 5.28471 5.31615 5.35476 5.80015 6.50289 6.64577 6.86879 7.19532 7.73261 8.62993 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.006089 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.296734 B = 4597.281444 C = 5302.277075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.133 4.133 4 C 0.519 3.481 5 O -0.586 6.586 6 N -0.605 5.605 7 C 0.089 3.911 8 C -0.111 4.111 9 C -0.113 4.113 10 C 0.152 3.848 11 H 0.095 0.905 12 C 0.385 3.615 13 O -0.572 6.572 14 O -0.242 6.242 15 C -0.424 4.424 16 H 0.070 0.930 17 C 0.000 4.000 18 N -0.899 5.899 19 Si 1.016 2.984 20 H -0.260 1.260 21 H -0.252 1.252 22 H -0.269 1.269 23 H 0.044 0.956 24 H 0.101 0.899 25 H 0.031 0.969 26 H 0.116 0.884 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 11.862 -15.294 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 C -0.190 4.190 4 C 0.309 3.691 5 O -0.464 6.464 6 N -0.340 5.340 7 C -0.032 4.032 8 C -0.148 4.148 9 C -0.151 4.151 10 C 0.046 3.954 11 H 0.112 0.888 12 C 0.231 3.769 13 O -0.468 6.468 14 O -0.150 6.150 15 C -0.500 4.500 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.536 5.536 19 Si 0.834 3.166 20 H -0.185 1.185 21 H -0.175 1.175 22 H -0.194 1.194 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.051 0.949 26 H 0.134 0.866 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.691 11.699 -14.745 19.181 hybrid contribution -0.916 -1.096 0.897 1.687 sum 2.775 10.603 -13.848 17.661 Atomic orbital electron populations 1.21663 0.93094 1.01342 1.03020 1.21351 0.97768 0.98710 0.94201 1.21754 1.01824 0.91426 1.04027 1.21521 0.79122 0.77618 0.90793 1.90697 1.56070 1.60573 1.39090 1.48572 1.16467 1.56814 1.12147 1.22790 0.88665 1.04051 0.87646 1.22867 0.95607 1.01085 0.95265 1.22604 0.90905 1.00601 1.01038 1.21056 0.93192 0.89799 0.91369 0.88770 1.24815 0.85750 0.86288 0.80009 1.90509 1.27114 1.71218 1.57962 1.83881 1.50016 1.38051 1.43059 1.21263 1.06888 1.05329 1.16479 0.91250 1.26477 0.98182 1.01325 0.94104 1.70048 1.23498 1.40067 1.20027 0.84738 0.77306 0.75750 0.78801 1.18458 1.17540 1.19383 0.93632 0.88062 0.94942 0.86559 0.93411 0.90881 0.87997 0.85869 0.91477 0.87715 0.86219 0.87659 0.91967 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.70 71.98 0.63 -2.79 16 2 C -0.10 -2.39 2.53 -11.54 -0.03 -2.42 16 3 C -0.13 -2.18 9.07 71.98 0.65 -1.52 16 4 C 0.52 19.49 6.24 87.66 0.55 20.03 16 5 O -0.59 -29.57 15.06 13.56 0.20 -29.37 16 6 N -0.61 -20.56 2.85 -792.21 -2.26 -22.82 16 7 C 0.09 1.82 6.39 86.85 0.55 2.38 16 8 C -0.11 -1.88 7.08 31.98 0.23 -1.65 16 9 C -0.11 -3.35 6.44 31.78 0.20 -3.15 16 10 C 0.15 6.16 3.40 44.60 0.15 6.31 16 11 H 0.09 3.83 8.14 -2.39 -0.02 3.82 16 12 C 0.39 21.69 6.70 71.23 0.48 22.17 16 13 O -0.57 -35.73 14.12 26.55 0.37 -35.36 16 14 O -0.24 -15.37 9.71 14.84 0.14 -15.23 16 15 C -0.42 -27.78 9.65 67.94 0.66 -27.12 16 16 H 0.07 4.72 6.86 -2.91 -0.02 4.70 16 17 C 0.00 -0.03 5.49 84.88 0.47 0.44 16 18 N -0.90 -54.97 13.67 21.62 0.30 -54.67 16 19 Si 1.02 46.12 29.55 68.60 2.03 48.14 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H 0.04 1.33 7.88 -2.39 -0.02 1.32 16 24 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.12 2.15 7.32 -2.39 -0.02 2.13 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 1.02 7.43 -2.38 -0.02 1.00 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.12 1.47 6.66 -2.39 -0.02 1.46 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.06 2.10 7.84 -2.39 -0.02 2.08 16 36 H 0.28 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -91.99 303.55 6.39 -85.60 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.07 Total: 11.04 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 4.53 Total: 12.67 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.96 Total: -77.49 kcal Atomic # 8 Polarization: -80.68 SS G_CDS: 0.72 Total: -79.96 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -91.99 6.39 -85.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748375386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.382 kcal (2) G-P(sol) polarization free energy of solvation -91.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds