Wall clock time and date at job start Mon Mar 30 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.50697 * 109.47256 * 120.00377 * 2 1 3 5 5 H 1.07999 * 119.99997 * 119.99307 * 4 2 1 6 6 C 1.37875 * 120.00083 * 299.99913 * 4 2 1 7 7 N 1.31517 * 120.00041 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00023 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47395 * 89.99795 * 8 6 4 10 10 H 1.48497 * 109.47329 * 210.00141 * 8 6 4 11 11 H 1.48508 * 109.47004 * 329.99926 * 8 6 4 12 12 O 1.45202 * 109.46692 * 240.00204 * 2 1 3 13 13 C 1.34238 * 116.99973 * 90.00162 * 12 2 1 14 14 O 1.20827 * 119.99507 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00199 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47248 * 179.97438 * 15 13 12 17 17 C 1.46493 * 120.00444 * 270.27463 * 16 15 13 18 18 C 1.34784 * 119.99635 * 90.00174 * 16 15 13 19 19 O 1.21279 * 119.99925 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.99961 * 180.02562 * 18 16 15 21 21 C 1.53003 * 117.49893 * 248.75021 * 20 18 16 22 22 C 1.52992 * 117.49949 * 180.08962 * 20 18 16 23 23 H 1.09001 * 109.46403 * 299.99546 * 1 2 3 24 24 H 1.08997 * 109.46886 * 59.99595 * 1 2 3 25 25 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99937 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47073 * 59.99757 * 15 13 12 28 28 H 1.09004 * 109.47082 * 300.00381 * 15 13 12 29 29 H 1.09000 * 109.47297 * 269.72722 * 17 16 15 30 30 H 1.09002 * 109.47192 * 29.72648 * 17 16 15 31 31 H 1.08996 * 109.47342 * 149.72358 * 17 16 15 32 32 H 1.09000 * 115.54983 * 34.41354 * 20 18 16 33 33 H 1.09000 * 117.49955 * 359.97438 * 21 20 18 34 34 H 1.08993 * 117.50271 * 145.01842 * 21 20 18 35 35 H 1.09007 * 117.49863 * 214.97660 * 22 20 18 36 36 H 1.09002 * 117.50278 * 359.96865 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8599 3.5564 8 14 0.6249 1.2788 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9761 1.9948 3.9069 11 1 0.8471 2.1764 1.4921 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9974 1.2518 -2.2505 15 6 2.7192 -0.5768 -3.5493 16 7 2.8570 0.4439 -4.5910 17 6 1.7280 0.7463 -5.4742 18 6 4.0207 1.1088 -4.7332 19 8 4.9536 0.8623 -3.9985 20 6 4.1624 2.1593 -5.8045 21 6 5.0972 1.8520 -6.9761 22 6 5.5088 2.8770 -5.9164 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9034 -0.5283 4.4375 27 1 2.0103 -1.3370 -3.8775 28 1 3.6883 -1.0399 -3.3633 29 1 1.7750 0.1071 -6.3558 30 1 0.7931 0.5654 -4.9438 31 1 1.7758 1.7913 -5.7802 32 1 3.2639 2.7389 -6.0162 33 1 5.6101 0.8902 -6.9719 34 1 4.8139 2.2298 -7.9584 35 1 5.4962 3.9289 -6.2022 36 1 6.2922 2.5899 -5.2149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759345116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:31 Heat of formation + Delta-G solvation = -107.313054 kcal Electronic energy + Delta-G solvation = -19148.399360 eV Core-core repulsion = 16019.435283 eV Total energy + Delta-G solvation = -3128.964077 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78400 -40.83595 -37.99834 -37.11389 -36.49701 -35.33636 -32.81052 -30.44729 -27.62721 -27.38494 -25.32104 -23.49897 -23.29113 -21.63256 -20.05297 -19.30880 -18.74095 -18.53939 -17.76328 -17.31926 -16.98865 -16.50460 -15.98112 -15.45356 -15.15286 -14.93505 -14.45290 -14.34972 -13.99308 -13.85503 -13.63454 -13.47396 -13.25529 -12.98561 -12.88427 -12.43520 -12.26679 -11.85675 -11.72825 -11.57187 -11.50094 -11.42811 -11.28028 -11.01363 -10.86910 -9.92523 -8.48264 -6.57685 1.14939 1.19548 1.23986 1.28074 1.37396 1.68590 2.15899 2.16667 2.84145 2.89636 3.45649 3.71614 3.81135 3.96481 4.04595 4.13490 4.19454 4.28229 4.31187 4.37090 4.49625 4.69967 4.71733 4.74600 4.84786 4.95025 5.05757 5.16886 5.21741 5.23791 5.30310 5.59407 6.10036 6.19359 6.46187 6.79483 7.01514 7.07339 8.68026 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.035856 B = 0.004756 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.723394 B = 5886.361475 C = 6011.616128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.193 3.807 3 H 0.022 0.978 4 C -0.544 4.544 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.930 5.930 8 Si 0.944 3.056 9 H -0.244 1.244 10 H -0.282 1.282 11 H -0.263 1.263 12 O -0.353 6.353 13 C 0.431 3.569 14 O -0.544 6.544 15 C 0.128 3.872 16 N -0.599 5.599 17 C 0.074 3.926 18 C 0.534 3.466 19 O -0.589 6.589 20 C -0.202 4.202 21 C -0.123 4.123 22 C -0.163 4.163 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.276 0.724 27 H 0.167 0.833 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 5.167 -24.783 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.138 3.862 3 H 0.040 0.960 4 C -0.582 4.582 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.568 5.568 8 Si 0.768 3.232 9 H -0.169 1.169 10 H -0.209 1.209 11 H -0.188 1.188 12 O -0.269 6.269 13 C 0.274 3.726 14 O -0.434 6.434 15 C 0.003 3.997 16 N -0.331 5.331 17 C -0.067 4.067 18 C 0.324 3.676 19 O -0.469 6.469 20 C -0.222 4.222 21 C -0.160 4.160 22 C -0.200 4.200 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.184 0.816 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.073 5.350 -24.156 24.828 hybrid contribution -0.219 0.516 1.203 1.327 sum -2.292 5.866 -22.953 23.801 Atomic orbital electron populations 1.22368 0.95598 1.02875 1.00797 1.20617 0.92466 0.92632 0.80449 0.96027 1.20976 1.33518 1.14061 0.89607 0.93659 1.25593 0.96945 0.99905 0.94546 1.69963 1.46123 1.41886 0.98797 0.85939 0.80105 0.79314 0.77801 1.16905 1.20886 1.18777 1.86498 1.76262 1.43191 1.20938 1.25220 0.73926 0.86355 0.87128 1.90561 1.49727 1.18075 1.85058 1.21090 1.05711 0.91018 0.81884 1.47648 1.14222 1.38717 1.32488 1.22191 0.87064 1.03602 0.93803 1.20596 0.81481 0.81220 0.84268 1.90697 1.41362 1.67251 1.47615 1.22280 0.98875 1.01383 0.99698 1.23068 0.98638 1.00450 0.93820 1.23054 0.95049 0.99658 1.02258 0.92681 0.92158 0.90717 0.91442 0.81567 0.86498 0.88582 0.90815 0.89290 0.83026 0.89091 0.84096 0.85436 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.04 9.03 71.99 0.65 -6.39 16 2 C 0.19 10.11 2.15 29.85 0.06 10.17 16 3 H 0.02 1.24 6.21 -2.39 -0.01 1.22 16 4 C -0.54 -33.09 9.48 25.60 0.24 -32.85 16 5 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 6 C 0.03 1.78 5.45 84.65 0.46 2.24 16 7 N -0.93 -58.15 13.96 21.45 0.30 -57.85 16 8 Si 0.94 45.24 24.37 68.60 1.67 46.91 16 9 H -0.24 -10.57 6.87 99.48 0.68 -9.89 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.26 -12.53 6.53 99.48 0.65 -11.88 16 12 O -0.35 -16.69 9.86 -51.49 -0.51 -17.20 16 13 C 0.43 17.44 8.00 71.23 0.57 18.01 16 14 O -0.54 -24.83 15.65 21.96 0.34 -24.49 16 15 C 0.13 3.58 5.99 85.63 0.51 4.09 16 16 N -0.60 -14.88 2.36 -851.16 -2.01 -16.89 16 17 C 0.07 1.06 10.26 127.77 1.31 2.37 16 18 C 0.53 15.57 7.46 87.66 0.65 16.22 16 19 O -0.59 -23.31 15.84 -3.03 -0.05 -23.35 16 20 C -0.20 -3.84 5.29 -11.54 -0.06 -3.91 16 21 C -0.12 -1.63 10.24 30.62 0.31 -1.32 16 22 C -0.16 -2.98 10.05 30.62 0.31 -2.68 16 23 H 0.05 2.43 3.27 -2.39 -0.01 2.42 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 26 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.17 3.00 8.07 -2.39 -0.02 2.98 16 28 H 0.12 3.51 7.42 -2.38 -0.02 3.49 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 31 H 0.09 1.03 6.00 -2.39 -0.01 1.02 16 32 H 0.15 2.06 6.44 -2.39 -0.02 2.04 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.92 7.67 -2.39 -0.02 1.90 16 Total: -1.00 -82.61 304.31 5.78 -76.83 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.00 Total: 10.07 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.03 Total: 5.98 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.71 Total: -74.74 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -0.21 Total: -65.05 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -82.61 5.78 -76.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759345116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.480 kcal (2) G-P(sol) polarization free energy of solvation -82.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds