Wall clock time and date at job start Mon Mar 30 2020 04:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99553 * 2 1 4 4 C 1.50710 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.39010 * 126.77118 * 269.97377 * 4 3 2 6 6 C 1.41488 * 126.02253 * 0.03799 * 5 4 3 7 7 H 1.08000 * 120.00479 * 359.72274 * 6 5 4 8 8 C 1.39745 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.30983 * 119.99866 * 359.72068 * 8 6 5 10 10 Si 1.86798 * 119.99961 * 179.72636 * 8 6 5 11 11 H 1.48498 * 109.47416 * 59.99826 * 10 8 6 12 12 H 1.48508 * 109.46609 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46903 * 299.99411 * 10 8 6 14 14 N 1.34844 * 107.95770 * 180.29749 * 5 4 3 15 15 N 1.28674 * 109.63153 * 359.55606 * 14 5 4 16 16 N 1.35016 * 126.76933 * 90.01527 * 4 3 2 17 17 C 1.46499 * 126.49317 * 359.96914 * 16 4 3 18 18 H 1.09000 * 109.47010 * 359.97438 * 17 16 4 19 19 C 1.53003 * 109.47303 * 119.99435 * 17 16 4 20 20 C 1.53006 * 109.47001 * 239.99612 * 17 16 4 21 21 C 1.52999 * 109.46967 * 174.99697 * 20 17 16 22 22 O 1.42904 * 109.46973 * 179.97438 * 21 20 17 23 23 H 1.09006 * 109.47055 * 300.00024 * 1 2 3 24 24 H 1.08993 * 109.47322 * 60.00210 * 1 2 3 25 25 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47215 * 60.00249 * 3 2 1 27 27 H 1.08999 * 109.47130 * 299.99600 * 3 2 1 28 28 H 0.97000 * 120.00385 * 179.97438 * 9 8 6 29 29 H 1.09003 * 109.46966 * 179.97438 * 19 17 16 30 30 H 1.08994 * 109.47573 * 300.00044 * 19 17 16 31 31 H 1.09000 * 109.46958 * 60.00127 * 19 17 16 32 32 H 1.09002 * 109.47087 * 295.00000 * 20 17 16 33 33 H 1.09000 * 109.46661 * 54.99979 * 20 17 16 34 34 H 1.08995 * 109.47817 * 300.00069 * 21 20 17 35 35 H 1.09009 * 109.47022 * 60.00346 * 21 20 17 36 36 H 0.96694 * 113.99915 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.3417 1.1216 1.1145 6 6 3.9239 1.1548 2.4659 7 1 2.8742 1.2419 2.7047 8 6 4.8699 1.0800 3.4918 9 7 6.1429 0.9738 3.2023 10 14 4.3188 1.1315 5.2759 11 1 3.4066 -0.0088 5.5454 12 1 5.5058 1.0370 6.1634 13 1 3.6064 2.4080 5.5372 14 7 5.6148 1.0272 0.6802 15 7 5.6332 1.0197 -0.6064 16 7 4.3187 1.1229 -1.0806 17 6 3.8987 1.1557 -2.4837 18 1 2.8132 1.2407 -2.5361 19 6 4.5390 2.3583 -3.1798 20 6 4.3431 -0.1326 -3.1793 21 6 3.7977 -0.1546 -4.6086 22 8 4.2134 -1.3575 -5.2585 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 6.7996 0.9223 3.9143 29 1 4.2268 2.3824 -4.2239 30 1 4.2224 3.2760 -2.6843 31 1 5.6244 2.2729 -3.1274 32 1 5.4320 -0.1745 -3.2052 33 1 3.9593 -0.9927 -2.6307 34 1 2.7089 -0.1128 -4.5828 35 1 4.1815 0.7056 -5.1573 36 1 3.9033 -1.4390 -6.1708 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958541958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:38 Heat of formation + Delta-G solvation = -12.403458 kcal Electronic energy + Delta-G solvation = -19401.715638 eV Core-core repulsion = 16309.159901 eV Total energy + Delta-G solvation = -3092.555737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08630 -37.38933 -37.11661 -35.27157 -33.24837 -31.16650 -29.85705 -28.21054 -27.12303 -25.44051 -24.16685 -24.03205 -21.63129 -19.73514 -19.09090 -17.62707 -16.67625 -15.88137 -15.86127 -15.35535 -15.24295 -14.77458 -14.28625 -14.05338 -13.65839 -13.50545 -12.87648 -12.46982 -12.24073 -12.09458 -11.82468 -11.33200 -11.16138 -11.11233 -11.04296 -10.97635 -10.89920 -10.57867 -10.26368 -9.94529 -9.72659 -9.28690 -9.21068 -8.85380 -8.48453 -7.45587 -6.38477 -4.18073 2.68636 3.18035 3.20868 3.22953 3.50596 4.13452 4.17253 4.30122 4.62327 4.91512 5.11032 5.20005 5.32037 5.35471 5.47105 5.50770 5.57641 5.60379 5.71445 5.75901 5.88569 5.93181 5.98316 6.11051 6.13502 6.38975 6.45770 6.87794 7.14870 7.40959 7.50310 7.55658 7.69598 8.16710 8.42178 8.80676 9.06749 10.19446 10.57762 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.006334 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.498961 B = 4419.643745 C = 5167.230758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.168 3.832 4 C -0.133 4.133 5 C 0.172 3.828 6 C -0.443 4.443 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.771 5.771 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.268 1.268 14 N -0.231 5.231 15 N -0.110 5.110 16 N -0.366 5.366 17 C 0.171 3.829 18 H 0.087 0.913 19 C -0.161 4.161 20 C -0.127 4.127 21 C 0.080 3.920 22 O -0.572 6.572 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.274 0.726 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 1.320 -11.283 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.090 3.910 4 C -0.262 4.262 5 C 0.043 3.957 6 C -0.479 4.479 7 H 0.099 0.901 8 C -0.147 4.147 9 N -0.397 5.397 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.193 1.193 14 N -0.104 5.104 15 N -0.087 5.087 16 N -0.164 5.164 17 C 0.066 3.934 18 H 0.105 0.895 19 C -0.219 4.219 20 C -0.165 4.165 21 C 0.002 3.998 22 O -0.377 6.377 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.144 0.928 -10.985 13.137 hybrid contribution -1.899 0.400 0.463 1.995 sum -9.043 1.328 -10.523 13.938 Atomic orbital electron populations 1.22643 0.82747 1.01946 0.99235 1.88123 1.18029 1.29139 1.95152 1.20253 0.87585 0.83966 0.99170 1.20857 0.91701 1.25957 0.87714 1.18961 0.85992 0.97525 0.93232 1.18538 0.94245 1.47491 0.87607 0.90131 1.25815 0.94572 0.93413 1.00876 1.70005 1.01056 1.34521 1.34105 0.86380 0.78773 0.79478 0.81992 1.19217 1.20524 1.19292 1.75158 1.19889 1.15817 0.99523 1.81425 0.97296 1.22855 1.07171 1.49398 1.06934 1.55880 1.04212 1.20744 0.98756 0.94989 0.78876 0.89479 1.22200 1.02715 0.97446 0.99524 1.21811 1.03184 0.97954 0.93573 1.22193 0.97622 0.86506 0.93487 1.86522 1.78769 1.41833 1.30596 0.94324 0.95053 0.90379 0.91671 0.94789 0.91548 0.91579 0.92094 0.91024 0.89934 0.90582 0.93723 0.93259 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.39 -7.61 10.69 -35.23 -0.38 -7.99 16 3 C 0.17 3.31 5.83 36.01 0.21 3.52 16 4 C -0.13 -3.24 6.74 -80.90 -0.55 -3.79 16 5 C 0.17 4.88 6.72 -85.02 -0.57 4.31 16 6 C -0.44 -12.35 9.11 -37.78 -0.34 -12.69 16 7 H 0.08 2.09 7.30 -52.49 -0.38 1.71 16 8 C 0.07 1.97 5.49 -17.35 -0.10 1.88 16 9 N -0.77 -22.07 11.92 55.54 0.66 -21.41 16 10 Si 0.91 19.80 29.56 -169.99 -5.02 14.77 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 N -0.23 -6.84 10.56 32.05 0.34 -6.50 16 15 N -0.11 -2.92 13.62 60.35 0.82 -2.09 16 16 N -0.37 -8.31 3.29 -49.73 -0.16 -8.47 16 17 C 0.17 2.87 3.15 -67.93 -0.21 2.66 16 18 H 0.09 1.32 6.80 -51.93 -0.35 0.96 16 19 C -0.16 -2.28 9.22 37.16 0.34 -1.93 16 20 C -0.13 -2.04 5.32 -26.73 -0.14 -2.18 16 21 C 0.08 0.95 6.80 37.16 0.25 1.20 16 22 O -0.57 -7.07 13.66 -35.23 -0.48 -7.55 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.26 7.56 -51.93 -0.39 0.87 16 27 H 0.03 0.57 7.20 -51.93 -0.37 0.19 16 28 H 0.27 7.19 8.30 -40.82 -0.34 6.85 16 29 H 0.07 0.69 6.56 -51.93 -0.34 0.35 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.49 6.57 -51.92 -0.34 0.15 16 36 H 0.38 2.57 9.12 45.56 0.42 2.98 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -34.56 308.54 -3.85 -38.42 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.28 Total: 1.65 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.01 Total: -5.48 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.66 Total: -38.47 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.86 Total: -15.54 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.56 -3.85 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.014 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds