Wall clock time and date at job start Mon Mar 30 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.62826 * 2 1 4 4 C 1.53107 * 109.52327 * 183.81305 * 3 2 1 5 5 C 1.53051 * 109.27555 * 182.50705 * 4 3 2 6 6 N 1.46843 * 109.57549 * 59.07985 * 5 4 3 7 7 C 1.46846 * 111.20060 * 298.29394 * 6 5 4 8 8 C 1.53036 * 109.52251 * 61.74164 * 7 6 5 9 9 O 1.43748 * 109.63131 * 120.39322 * 2 1 3 10 10 C 1.44789 * 104.81324 * 95.42065 * 9 2 1 11 11 C 1.54910 * 101.72361 * 36.10020 * 10 9 2 12 12 H 1.09007 * 110.69576 * 83.01084 * 11 10 9 13 13 C 1.53002 * 110.69770 * 206.03901 * 11 10 9 14 14 C 1.50696 * 109.46997 * 184.99773 * 13 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.43368 * 109.50926 * 239.68437 * 2 1 3 23 23 H 1.09001 * 109.47491 * 300.30346 * 1 2 3 24 24 H 1.08995 * 109.47202 * 60.30679 * 1 2 3 25 25 H 1.09004 * 109.47126 * 180.30677 * 1 2 3 26 26 H 1.09001 * 109.52299 * 303.94343 * 3 2 1 27 27 H 1.09003 * 109.50690 * 302.38088 * 4 3 2 28 28 H 1.08994 * 109.50694 * 62.50367 * 4 3 2 29 29 H 1.09004 * 109.40675 * 299.07097 * 5 4 3 30 30 H 1.09000 * 109.46657 * 179.13371 * 5 4 3 31 31 H 1.00898 * 110.99761 * 62.39222 * 6 5 4 32 32 H 1.08999 * 109.46283 * 301.72466 * 7 6 5 33 33 H 1.08999 * 109.46241 * 181.75704 * 7 6 5 34 34 H 1.08997 * 109.50193 * 180.87843 * 8 7 6 35 35 H 1.09003 * 109.53494 * 60.78216 * 8 7 6 36 36 H 1.08999 * 110.97728 * 277.98969 * 10 9 2 37 37 H 1.09004 * 111.00920 * 154.22458 * 10 9 2 38 38 H 1.09005 * 109.46767 * 65.00124 * 13 11 10 39 39 H 1.09002 * 109.47113 * 305.00464 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5720 1.4394 -0.0960 5 6 4.0839 2.8804 -0.0325 6 7 3.6540 3.5001 1.2274 7 6 2.1895 3.5559 1.3193 8 6 1.6213 2.1350 1.2979 9 8 2.0129 -0.6850 1.1679 10 6 2.2618 -2.0409 0.7253 11 6 2.7838 -1.8111 -0.7150 12 1 3.8474 -1.5727 -0.7059 13 6 2.5140 -3.0369 -1.5900 14 6 3.1393 -2.8336 -2.9460 15 1 3.6758 -1.9215 -3.1620 16 6 3.0264 -3.8121 -3.9109 17 7 3.5725 -3.6349 -5.0941 18 14 2.0978 -5.3892 -3.5374 19 1 3.0362 -6.3961 -2.9800 20 1 1.0260 -5.1103 -2.5481 21 1 1.4927 -5.9152 -4.7875 22 8 2.0088 -0.6821 -1.1666 23 1 -0.3634 0.5185 0.8872 24 1 -0.3633 0.5090 -0.8927 25 1 -0.3633 -1.0277 0.0055 26 1 1.6260 1.9769 -0.8523 27 1 3.9882 0.8695 0.7348 28 1 3.8770 0.9851 -1.0386 29 1 3.6791 3.4458 -0.8719 30 1 5.1726 2.8818 -0.0851 31 1 4.0480 3.0170 2.0208 32 1 1.7937 4.1181 0.4736 33 1 1.9024 4.0478 2.2486 34 1 0.5334 2.1774 1.3503 35 1 2.0053 1.5760 2.1512 36 1 1.3412 -2.6243 0.7183 37 1 3.0207 -2.5207 1.3434 38 1 1.4384 -3.1732 -1.7026 39 1 2.9450 -3.9208 -1.1199 40 1 3.4934 -4.3234 -5.7728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:27 Heat of formation + Delta-G solvation = -104.417542 kcal Electronic energy + Delta-G solvation = -20374.808550 eV Core-core repulsion = 17381.803127 eV Total energy + Delta-G solvation = -2993.005424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53860 -38.25624 -34.70789 -33.71824 -32.62106 -30.86635 -30.66321 -29.04024 -26.91286 -24.14814 -23.13495 -22.69066 -21.14103 -20.50399 -19.80273 -17.18233 -16.59029 -16.20229 -15.75236 -14.95158 -14.63664 -14.41722 -14.23751 -13.94898 -13.44954 -13.30557 -12.91917 -12.63487 -12.56972 -12.41684 -12.02816 -11.89184 -11.78338 -11.73080 -11.50685 -11.20560 -11.14665 -10.58589 -10.50782 -10.34103 -10.12465 -9.74511 -9.59671 -9.32794 -9.02408 -8.57827 -8.33751 -6.06299 -4.04248 3.26152 3.34636 3.36324 3.83589 4.20431 4.37035 4.41140 4.72739 4.87914 4.94209 5.14531 5.16355 5.26631 5.33720 5.41313 5.44380 5.47399 5.52532 5.62685 5.64478 5.75240 5.84928 5.87533 5.96823 6.03296 6.07862 6.14006 6.26690 6.30353 6.36104 6.46289 6.56184 6.90925 6.98964 7.18759 7.32438 7.64683 7.76436 8.49912 8.99605 9.54180 11.07208 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032941 B = 0.005633 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.797076 B = 4969.257363 C = 5372.957012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.254 3.746 3 C -0.083 4.083 4 C -0.149 4.149 5 C 0.057 3.943 6 N -0.688 5.688 7 C 0.058 3.942 8 C -0.148 4.148 9 O -0.378 6.378 10 C 0.013 3.987 11 C 0.074 3.926 12 H 0.077 0.923 13 C -0.013 4.013 14 C -0.512 4.512 15 H 0.075 0.925 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.267 1.267 21 H -0.286 1.286 22 O -0.355 6.355 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.339 0.661 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 9.739 14.007 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.176 3.824 3 C -0.102 4.102 4 C -0.188 4.188 5 C -0.072 4.072 6 N -0.316 5.316 7 C -0.072 4.072 8 C -0.188 4.188 9 O -0.299 6.299 10 C -0.063 4.063 11 C 0.017 3.983 12 H 0.095 0.905 13 C -0.050 4.050 14 C -0.550 4.550 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.212 1.212 22 O -0.276 6.276 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.662 10.474 13.577 17.535 hybrid contribution -0.777 -2.142 0.152 2.284 sum -4.440 8.332 13.730 16.663 Atomic orbital electron populations 1.22380 0.94859 1.03031 1.02497 1.23245 0.92226 0.90797 0.76083 1.21440 0.96673 0.93637 0.98425 1.22201 0.94869 0.98123 1.03637 1.22029 1.00164 0.92709 0.92345 1.60714 1.08794 1.57173 1.04912 1.22014 0.87843 0.95252 1.02119 1.22275 1.01291 0.97265 0.97924 1.89115 1.86139 1.22146 1.32535 1.24554 1.01049 0.84303 0.96417 1.23775 0.95380 0.87866 0.91264 0.90524 1.19735 0.97929 0.91162 0.96186 1.20969 1.34311 1.04835 0.94891 0.90703 1.25003 0.95182 0.98284 0.94929 1.69908 1.45060 1.34621 1.04385 0.86829 0.80763 0.83969 0.78011 1.20231 1.19152 1.21227 1.89034 1.69675 1.41674 1.27202 0.91309 0.91007 0.91968 0.89934 0.91675 0.90264 0.91020 0.90743 0.84390 0.91091 0.90953 0.91463 0.91113 0.91260 0.88163 0.95598 0.95481 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.93 37.16 0.33 -2.13 16 2 C 0.25 4.15 0.73 -26.73 -0.02 4.13 16 3 C -0.08 -1.16 1.88 -90.50 -0.17 -1.33 16 4 C -0.15 -2.11 5.05 -26.65 -0.13 -2.24 16 5 C 0.06 0.68 6.55 -3.83 -0.03 0.66 16 6 N -0.69 -7.60 6.87 -113.81 -0.78 -8.38 16 7 C 0.06 0.59 6.55 -3.83 -0.03 0.57 16 8 C -0.15 -1.70 4.89 -26.65 -0.13 -1.83 16 9 O -0.38 -6.13 9.60 -59.04 -0.57 -6.70 16 10 C 0.01 0.21 7.36 38.16 0.28 0.50 16 11 C 0.07 1.49 3.58 -25.72 -0.09 1.40 16 12 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 13 C -0.01 -0.30 3.80 -27.88 -0.11 -0.41 16 14 C -0.51 -14.59 9.59 -34.44 -0.33 -14.92 16 15 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 O -0.35 -7.31 9.72 -59.04 -0.57 -7.88 16 23 H 0.07 0.85 6.60 -51.93 -0.34 0.50 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 28 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.34 3.48 8.86 -39.29 -0.35 3.13 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.72 6.68 -51.93 -0.35 0.37 16 35 H 0.07 0.88 7.52 -51.93 -0.39 0.48 16 36 H 0.07 1.09 8.04 -51.93 -0.42 0.68 16 37 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 39 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -30.86 310.21 -8.46 -39.33 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.80 Total: 3.00 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.52 Total: -13.77 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.01 Total: -35.42 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.14 Total: -14.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.86 -8.46 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.092 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds