Wall clock time and date at job start Mon Mar 30 2020 04:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46862 * 2 1 4 4 N 1.46503 * 109.47062 * 184.80955 * 3 2 1 5 5 C 1.37093 * 120.00170 * 94.78727 * 4 3 2 6 6 H 1.08004 * 119.99884 * 216.19515 * 5 4 3 7 7 C 1.38952 * 120.00052 * 36.19278 * 5 4 3 8 8 N 1.31407 * 119.99830 * 215.12526 * 7 5 4 9 9 Si 1.86797 * 120.00022 * 35.12290 * 7 5 4 10 10 H 1.48502 * 109.47216 * 89.50778 * 9 7 5 11 11 H 1.48495 * 109.47344 * 209.50949 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.50964 * 9 7 5 13 13 C 1.34776 * 119.99652 * 274.78416 * 4 3 2 14 14 O 1.21299 * 120.00410 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99844 * 179.97438 * 13 4 3 16 16 C 1.53005 * 109.46961 * 180.02562 * 15 13 4 17 17 C 1.53002 * 109.46928 * 180.02562 * 16 15 13 18 18 H 1.09000 * 110.27544 * 55.63665 * 17 16 15 19 19 C 1.54941 * 110.30817 * 177.83271 * 17 16 15 20 20 C 1.55301 * 100.94218 * 155.36109 * 19 17 16 21 21 C 1.54379 * 102.25193 * 325.86340 * 20 19 17 22 22 O 1.43242 * 107.58735 * 21.35907 * 21 20 19 23 23 H 1.09000 * 109.47405 * 55.22768 * 1 2 3 24 24 H 1.09001 * 109.46922 * 175.22952 * 1 2 3 25 25 H 1.09002 * 109.47159 * 295.22336 * 1 2 3 26 26 H 1.08997 * 109.46859 * 119.99799 * 2 1 3 27 27 H 1.08999 * 109.47215 * 240.00127 * 2 1 3 28 28 H 1.08998 * 109.47242 * 304.80579 * 3 2 1 29 29 H 1.08998 * 109.46876 * 64.80654 * 3 2 1 30 30 H 0.96998 * 120.00096 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47161 * 300.00308 * 15 13 4 32 32 H 1.08995 * 109.46730 * 60.00558 * 15 13 4 33 33 H 1.09001 * 109.47079 * 299.99923 * 16 15 13 34 34 H 1.08990 * 109.47498 * 60.00019 * 16 15 13 35 35 H 1.09008 * 111.12723 * 273.27906 * 19 17 16 36 36 H 1.08995 * 111.12967 * 37.43764 * 19 17 16 37 37 H 1.09003 * 110.84949 * 207.67501 * 20 19 17 38 38 H 1.09001 * 111.02732 * 84.13426 * 20 19 17 39 39 H 1.08993 * 109.83252 * 261.84208 * 21 20 19 40 40 H 1.09007 * 109.90492 * 140.91447 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5004 1.4442 -0.1158 5 6 4.0903 1.5771 -1.3462 6 1 4.9998 1.0392 -1.5699 7 6 3.5181 2.4037 -2.3054 8 7 3.5783 2.0750 -3.5763 9 14 2.6633 3.9820 -1.7883 10 1 3.6485 5.0929 -1.7622 11 1 1.5838 4.3006 -2.7569 12 1 2.0782 3.8075 -0.4347 13 6 4.2639 1.3151 0.9873 14 8 3.7420 1.1972 2.0759 15 6 5.7662 1.3163 0.8681 16 6 6.3881 1.1559 2.2569 17 6 7.9133 1.1577 2.1360 18 1 8.2509 2.0613 1.6284 19 6 8.5640 1.0509 3.5381 20 6 9.9426 0.4337 3.1770 21 6 9.5897 -0.4816 1.9850 22 8 8.3585 -0.0089 1.4260 23 1 -0.3634 0.5861 -0.8441 24 1 -0.3633 -1.0241 -0.0855 25 1 -0.3633 0.4379 0.9297 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6080 1.9806 -0.8438 29 1 1.7486 1.9308 0.9299 30 1 3.1786 2.6518 -4.2459 31 1 6.0809 0.4891 0.2318 32 1 6.0951 2.2581 0.4290 33 1 6.0734 1.9828 2.8936 34 1 6.0592 0.2140 2.6957 35 1 8.6810 2.0346 3.9929 36 1 7.9935 0.3859 4.1864 37 1 10.3370 -0.1486 4.0098 38 1 10.6504 1.2063 2.8766 39 1 9.4690 -1.5083 2.3302 40 1 10.3788 -0.4343 1.2344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:17 Heat of formation + Delta-G solvation = -112.866072 kcal Electronic energy + Delta-G solvation = -19577.747728 eV Core-core repulsion = 16584.375949 eV Total energy + Delta-G solvation = -2993.371779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83351 -40.17138 -37.16424 -34.88505 -34.25708 -33.46906 -32.94091 -29.69972 -27.56626 -26.73734 -24.66997 -22.73924 -22.42499 -21.73224 -20.77732 -18.67511 -17.94717 -17.78770 -17.10832 -16.64787 -16.29645 -15.88547 -15.64448 -15.33284 -14.79780 -14.65731 -14.28948 -14.17084 -13.96959 -13.59998 -13.21162 -13.03203 -12.74485 -12.64748 -12.60932 -12.50767 -12.28407 -12.17510 -11.79609 -11.76519 -11.67008 -11.62616 -11.49220 -11.01885 -10.40061 -10.37635 -9.71078 -8.60662 -6.04192 1.23307 1.34156 1.43838 1.91811 2.21059 2.60315 2.95154 2.99036 3.63980 3.81160 4.01699 4.05130 4.16596 4.19066 4.22632 4.30202 4.42110 4.45568 4.54488 4.64212 4.68780 4.77556 4.86447 4.89699 4.92772 4.95493 4.97604 5.07189 5.10775 5.19183 5.25409 5.27590 5.32759 5.38504 5.50361 6.07646 6.20701 6.28973 6.97509 7.46935 7.84938 8.54310 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.005623 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.243451 B = 4978.368583 C = 5525.725261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.111 3.889 4 N -0.469 5.469 5 C -0.363 4.363 6 H 0.077 0.923 7 C 0.047 3.953 8 N -0.870 5.870 9 Si 0.904 3.096 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.255 1.255 13 C 0.465 3.535 14 O -0.622 6.622 15 C -0.107 4.107 16 C -0.089 4.089 17 C 0.077 3.923 18 H 0.075 0.925 19 C -0.147 4.147 20 C -0.146 4.146 21 C 0.038 3.962 22 O -0.410 6.410 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.281 0.719 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -0.671 10.114 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.012 4.012 4 N -0.189 5.189 5 C -0.489 4.489 6 H 0.095 0.905 7 C -0.160 4.160 8 N -0.505 5.505 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.197 1.197 12 H -0.179 1.179 13 C 0.257 3.743 14 O -0.510 6.510 15 C -0.147 4.147 16 C -0.127 4.127 17 C 0.020 3.980 18 H 0.093 0.907 19 C -0.185 4.185 20 C -0.183 4.183 21 C -0.038 4.038 22 O -0.330 6.330 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.702 -0.793 10.219 12.247 hybrid contribution -0.228 0.704 -0.400 0.841 sum 6.474 -0.089 9.820 11.762 Atomic orbital electron populations 1.21660 0.93126 1.02738 1.02135 1.21726 0.97645 0.96357 1.00897 1.21720 0.81754 0.97512 1.00199 1.43882 1.04694 1.64131 1.06146 1.18768 1.12754 1.29147 0.88269 0.90499 1.25753 0.96420 0.99611 0.94247 1.70029 1.41820 1.36245 1.02372 0.86546 0.79103 0.81778 0.79894 1.19990 1.19654 1.17869 1.21133 0.90832 0.79356 0.83016 1.90485 1.76081 1.56753 1.27683 1.21266 0.90726 1.03564 0.99140 1.21405 0.93254 1.02587 0.95492 1.23117 0.93441 0.88682 0.92710 0.90704 1.23295 0.96011 1.03299 0.95866 1.23101 0.97280 0.99625 0.98309 1.23327 0.86070 0.98490 0.95958 1.88455 1.40556 1.45631 1.58376 0.92463 0.90938 0.91950 0.93236 0.93113 0.91944 0.92279 0.90862 0.90699 0.89465 0.90163 0.92587 0.88083 0.90454 0.88169 0.89377 0.91182 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.13 -5.19 6.23 30.59 0.19 -5.00 16 3 C 0.11 5.09 3.62 86.38 0.31 5.40 16 4 N -0.47 -23.51 2.18 -635.53 -1.38 -24.90 16 5 C -0.36 -19.47 8.95 84.04 0.75 -18.72 16 6 H 0.08 4.43 7.18 -2.91 -0.02 4.40 16 7 C 0.05 2.49 4.98 84.93 0.42 2.92 16 8 N -0.87 -47.89 13.96 21.66 0.30 -47.59 16 9 Si 0.90 40.74 26.45 68.60 1.81 42.56 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.25 -11.38 5.82 99.48 0.58 -10.80 16 13 C 0.47 22.58 7.60 87.66 0.67 23.24 16 14 O -0.62 -31.82 15.64 -3.09 -0.05 -31.87 16 15 C -0.11 -4.46 4.29 29.85 0.13 -4.33 16 16 C -0.09 -3.08 4.25 30.60 0.13 -2.95 16 17 C 0.08 2.18 3.43 31.26 0.11 2.29 16 18 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 19 C -0.15 -2.98 6.57 32.05 0.21 -2.77 16 20 C -0.15 -2.41 7.02 31.85 0.22 -2.19 16 21 C 0.04 0.84 7.79 72.45 0.56 1.40 16 22 O -0.41 -13.00 10.69 -148.98 -1.59 -14.59 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.85 4.55 -2.39 -0.01 2.83 16 29 H 0.06 2.70 7.57 -2.39 -0.02 2.68 16 30 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.07 3.30 7.42 -2.39 -0.02 3.28 16 32 H 0.09 3.53 8.10 -2.39 -0.02 3.52 16 33 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 34 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 35 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -63.28 320.52 4.38 -58.90 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.86 Total: 21.80 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.42 Total: -4.32 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -1.08 Total: -72.48 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.64 Total: -46.46 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.81 Total: 42.56 kcal Total: -63.28 4.38 -58.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.962 kcal (2) G-P(sol) polarization free energy of solvation -63.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds