Wall clock time and date at job start Mon Mar 30 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.54219 * 2 1 4 4 C 1.53105 * 109.50801 * 239.89223 * 2 1 3 5 5 N 1.47014 * 109.25628 * 296.91878 * 4 2 1 6 6 C 1.47017 * 110.74919 * 301.37579 * 5 4 2 7 7 C 1.53100 * 109.29333 * 58.60186 * 6 5 4 8 8 H 1.09000 * 109.50431 * 63.10179 * 7 6 5 9 9 C 1.53000 * 109.50899 * 183.23488 * 7 6 5 10 10 O 1.42899 * 109.47018 * 184.62439 * 9 7 6 11 11 C 1.42904 * 113.99853 * 184.89044 * 10 9 7 12 12 C 1.52992 * 109.46930 * 175.11313 * 11 10 9 13 13 C 1.50702 * 115.55179 * 39.58228 * 12 11 10 14 14 H 1.07996 * 119.99693 * 268.24683 * 13 12 11 15 15 C 1.37873 * 120.00116 * 88.24847 * 13 12 11 16 16 N 1.31519 * 120.00141 * 179.57825 * 15 13 12 17 17 Si 1.86800 * 120.00303 * 359.57931 * 15 13 12 18 18 H 1.48502 * 109.47220 * 91.78789 * 17 15 13 19 19 H 1.48502 * 109.47286 * 211.79317 * 17 15 13 20 20 H 1.48510 * 109.46732 * 331.79062 * 17 15 13 21 21 C 1.53004 * 117.49898 * 253.86873 * 12 11 10 22 22 C 1.53004 * 117.49545 * 185.24762 * 12 11 10 23 23 O 1.43016 * 109.50717 * 120.11112 * 2 1 3 24 24 H 1.09006 * 109.46900 * 174.23204 * 1 2 3 25 25 H 1.08994 * 109.47293 * 294.23195 * 1 2 3 26 26 H 1.09000 * 109.46814 * 54.23464 * 1 2 3 27 27 H 1.08999 * 109.50619 * 176.97758 * 4 2 1 28 28 H 1.08999 * 109.53930 * 56.87057 * 4 2 1 29 29 H 1.00901 * 110.99751 * 177.60746 * 5 4 2 30 30 H 1.09001 * 109.50728 * 178.55403 * 6 5 4 31 31 H 1.08993 * 109.51080 * 298.64118 * 6 5 4 32 32 H 1.08995 * 109.46979 * 304.63018 * 9 7 6 33 33 H 1.09000 * 109.46726 * 64.62891 * 9 7 6 34 34 H 1.09006 * 109.46855 * 295.11582 * 11 10 9 35 35 H 1.08997 * 109.47161 * 55.10849 * 11 10 9 36 36 H 0.97000 * 120.00283 * 179.97438 * 16 15 13 37 37 H 1.08990 * 117.49736 * 0.02562 * 21 12 11 38 38 H 1.08999 * 117.49308 * 145.02213 * 21 12 11 39 39 H 1.09001 * 117.50096 * 214.97663 * 22 12 11 40 40 H 1.08999 * 117.50198 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2485 5 7 1.6109 -2.1290 -1.2046 6 6 2.1185 -2.7916 0.0056 7 6 1.6074 -2.0474 1.2421 8 1 0.5197 -2.1069 1.2789 9 6 2.1978 -2.6839 2.5019 10 8 1.6375 -2.0591 3.6586 11 6 2.2046 -2.5050 4.8922 12 6 1.6210 -1.6879 6.0465 13 6 0.1507 -1.3738 5.9423 14 1 -0.1735 -0.4571 5.4724 15 6 -0.7803 -2.2566 6.4470 16 7 -2.0630 -1.9785 6.3635 17 14 -0.2199 -3.8477 7.2494 18 1 -0.0537 -3.6340 8.7095 19 1 -1.2368 -4.9045 7.0163 20 1 1.0764 -4.2694 6.6601 21 6 2.5241 -0.6373 6.6958 22 6 2.1943 -1.9304 7.4442 23 8 2.0075 -0.6763 1.1662 24 1 -0.3633 -1.0225 -0.1033 25 1 -0.3633 0.4218 0.9371 26 1 -0.3633 0.6006 -0.8339 27 1 3.1299 -0.6773 -1.2760 28 1 1.6338 -0.2462 -2.1394 29 1 1.9012 -2.6222 -2.0356 30 1 1.7669 -3.8231 0.0306 31 1 3.2084 -2.7788 -0.0023 32 1 1.9641 -3.7484 2.5148 33 1 3.2794 -2.5492 2.5043 34 1 1.9712 -3.5596 5.0391 35 1 3.2861 -2.3728 4.8637 36 1 -2.7181 -2.5998 6.7182 37 1 3.5338 -0.5280 6.3002 38 1 2.0549 0.2815 7.0475 39 1 1.5081 -1.8622 8.2884 40 1 2.9874 -2.6717 7.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166752492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:25 Heat of formation + Delta-G solvation = -56.552246 kcal Electronic energy + Delta-G solvation = -19875.619775 eV Core-core repulsion = 16884.689946 eV Total energy + Delta-G solvation = -2990.929829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.69786 -37.62890 -35.83712 -34.53306 -32.58550 -31.92523 -29.34825 -26.95010 -25.81578 -24.89448 -23.83196 -22.27739 -21.56138 -19.40749 -18.89347 -16.97656 -16.49186 -16.40191 -15.64796 -15.10543 -14.72476 -14.63806 -14.41387 -14.13177 -13.88455 -13.84284 -12.99987 -12.65830 -12.40782 -12.04323 -11.81202 -11.72373 -11.62915 -11.16254 -11.05510 -10.82042 -10.60652 -10.40385 -10.08526 -9.97578 -9.54207 -9.44427 -9.12815 -8.76257 -8.58901 -8.42566 -8.28672 -5.95114 -3.94274 3.35299 3.43937 3.46961 3.86087 3.88416 4.31582 4.53183 4.84112 4.94614 5.00597 5.09419 5.23033 5.29170 5.32877 5.41524 5.50347 5.57814 5.63147 5.64186 5.73960 5.92746 6.02047 6.07255 6.11664 6.19939 6.21368 6.30942 6.49644 6.52438 6.54458 6.70570 6.77849 7.07209 7.09429 7.18998 7.43706 7.83727 8.11796 8.69567 9.11670 9.67964 11.17761 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.005638 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.135952 B = 4965.048518 C = 5130.060134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.101 0.899 4 C 0.025 3.975 5 N -0.683 5.683 6 C 0.029 3.971 7 C 0.095 3.905 8 H 0.081 0.919 9 C 0.066 3.934 10 O -0.342 6.342 11 C 0.099 3.901 12 C 0.002 3.998 13 C -0.461 4.461 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.261 1.261 21 C -0.178 4.178 22 C -0.200 4.200 23 O -0.362 6.362 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.344 0.656 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -1.402 -13.645 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.029 3.971 3 H 0.119 0.881 4 C -0.104 4.104 5 N -0.315 5.315 6 C -0.101 4.101 7 C 0.037 3.963 8 H 0.099 0.901 9 C -0.012 4.012 10 O -0.260 6.260 11 C 0.022 3.978 12 C 0.001 3.999 13 C -0.499 4.499 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.186 1.186 21 C -0.215 4.215 22 C -0.237 4.237 23 O -0.281 6.281 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.025 -1.091 -13.188 16.018 hybrid contribution 1.250 -1.402 -0.007 1.879 sum 10.275 -2.494 -13.195 16.908 Atomic orbital electron populations 1.22289 0.95326 1.03474 1.02329 1.22230 0.94798 0.95799 0.84291 0.88088 1.22646 0.98068 0.89890 0.99834 1.60456 1.63564 1.02749 1.04699 1.22533 0.97829 0.98852 0.90896 1.22080 1.00307 0.81915 0.92030 0.90109 1.22309 0.96854 0.95543 0.86503 1.88186 1.61436 1.64274 1.12082 1.22236 0.93536 0.97137 0.84842 1.19318 0.95836 0.96941 0.87772 1.20144 0.85504 1.07023 1.37216 0.90309 1.24944 0.94644 0.97526 0.95597 1.69897 1.00427 1.36862 1.46920 0.86903 0.78566 0.83942 0.79889 1.20680 1.22249 1.18611 1.22874 0.99055 0.93688 1.05912 1.22972 1.03111 0.99811 0.97781 1.88159 1.74871 1.22854 1.42206 0.90986 0.91461 0.92327 0.94523 0.89837 0.83860 0.89525 0.94309 0.92705 0.93790 0.94267 0.95817 0.92853 0.91034 0.89429 0.89177 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.79 37.16 0.33 -2.10 16 2 C 0.09 1.17 3.92 -26.68 -0.10 1.07 16 3 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.03 0.27 6.18 -3.71 -0.02 0.25 16 5 N -0.68 -7.44 6.20 -113.49 -0.70 -8.15 16 6 C 0.03 0.35 6.05 -3.71 -0.02 0.32 16 7 C 0.09 1.53 2.69 -26.68 -0.07 1.46 16 8 H 0.08 1.45 6.63 -51.93 -0.34 1.11 16 9 C 0.07 1.15 5.61 37.16 0.21 1.36 16 10 O -0.34 -7.83 9.69 -40.06 -0.39 -8.21 16 11 C 0.10 2.20 5.85 37.15 0.22 2.42 16 12 C 0.00 0.06 1.23 -155.66 -0.19 -0.14 16 13 C -0.46 -13.48 8.83 -34.44 -0.30 -13.78 16 14 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 15 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 17 Si 0.88 22.20 25.02 -169.99 -4.25 17.95 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.26 -6.21 5.39 56.52 0.30 -5.91 16 21 C -0.18 -3.83 9.88 -26.73 -0.26 -4.09 16 22 C -0.20 -4.37 7.49 -26.73 -0.20 -4.57 16 23 O -0.36 -6.28 10.25 -40.06 -0.41 -6.69 16 24 H 0.07 1.06 6.28 -51.93 -0.33 0.73 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.34 2.86 8.90 -39.29 -0.35 2.51 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.04 0.87 6.54 -51.93 -0.34 0.53 16 35 H 0.02 0.47 7.92 -51.93 -0.41 0.05 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.09 2.06 7.08 -51.93 -0.37 1.69 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -32.85 314.02 -7.64 -40.49 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.86 Total: 3.13 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.53 Total: -15.73 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.07 Total: -35.66 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.80 Total: -14.91 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.25 Total: 17.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.85 -7.64 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166752492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.067 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds