Wall clock time and date at job start Mon Mar 30 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99989 * 2 1 4 4 H 1.09011 * 109.49817 * 29.93335 * 3 2 1 5 5 C 1.53195 * 109.49725 * 269.83875 * 3 2 1 6 6 N 1.46928 * 108.77274 * 294.67949 * 5 3 2 7 7 C 1.34777 * 120.62699 * 126.41563 * 6 5 3 8 8 O 1.21281 * 120.00174 * 354.56266 * 7 6 5 9 9 C 1.50700 * 119.99790 * 174.56726 * 7 6 5 10 10 H 1.09003 * 109.46850 * 334.65883 * 9 7 6 11 11 C 1.52998 * 109.46702 * 214.66399 * 9 7 6 12 12 C 1.50697 * 109.47238 * 94.66380 * 9 7 6 13 13 H 1.07994 * 120.00168 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99630 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00119 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99599 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47422 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47134 * 120.00586 * 16 14 12 19 19 H 1.48501 * 109.46865 * 239.99973 * 16 14 12 20 20 C 1.46920 * 118.74017 * 306.39711 * 6 5 3 21 21 C 1.53191 * 108.77959 * 53.60464 * 20 6 5 22 22 C 1.53039 * 109.31468 * 305.36704 * 21 20 6 23 23 H 1.09003 * 109.45979 * 301.34520 * 22 21 20 24 24 C 1.52997 * 109.44964 * 181.37423 * 22 21 20 25 25 H 1.08999 * 109.47427 * 300.00600 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00071 * 1 2 3 27 27 H 1.09002 * 109.47560 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.58773 * 54.46945 * 5 3 2 29 29 H 1.08997 * 109.58356 * 174.89526 * 5 3 2 30 30 H 1.08998 * 109.47093 * 184.90992 * 11 9 7 31 31 H 1.09005 * 109.47389 * 304.90744 * 11 9 7 32 32 H 1.09004 * 109.47078 * 64.90970 * 11 9 7 33 33 H 0.97004 * 120.00040 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.58786 * 173.39512 * 20 6 5 35 35 H 1.09004 * 109.58462 * 293.67313 * 20 6 5 36 36 H 1.09003 * 109.49812 * 185.41046 * 21 20 6 37 37 H 1.09009 * 109.49635 * 65.31482 * 21 20 6 38 38 H 1.08993 * 109.47579 * 299.96781 * 24 22 21 39 39 H 1.08998 * 109.47095 * 59.96960 * 24 22 21 40 40 H 1.09003 * 109.47271 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 2.0001 0.5128 5 6 2.2219 1.7709 -1.4441 6 7 3.2198 0.9000 -2.0801 7 6 2.9473 0.2805 -3.2457 8 8 1.8379 0.3594 -3.7295 9 6 4.0210 -0.5103 -3.9477 10 1 5.0005 -0.1286 -3.6595 11 6 3.8463 -0.3752 -5.4616 12 6 3.9125 -1.9617 -3.5570 13 1 3.1433 -2.2796 -2.8689 14 6 4.7953 -2.8837 -4.0782 15 7 5.7323 -2.4964 -4.9158 16 14 4.6612 -4.6827 -3.5934 17 1 3.5323 -4.8569 -2.6446 18 1 4.4198 -5.5055 -4.8058 19 1 5.9249 -5.1160 -2.9448 20 6 4.5205 0.7176 -1.4217 21 6 4.2830 0.2640 0.0221 22 6 3.3593 1.2639 0.7214 23 1 3.8134 2.2546 0.6994 24 6 3.1476 0.8323 2.1739 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.2807 1.7077 -1.9901 29 1 2.5802 2.8003 -1.4474 30 1 4.5676 -1.0156 -5.9692 31 1 2.8357 -0.6751 -5.7390 32 1 4.0111 0.6615 -5.7553 33 1 6.3536 -3.1450 -5.2822 34 1 5.0959 -0.0406 -1.9530 35 1 5.0674 1.6605 -1.4255 36 1 5.2355 0.2177 0.5502 37 1 3.8182 -0.7220 0.0219 38 1 2.6935 -0.1583 2.1961 39 1 4.1082 0.8032 2.6880 40 1 2.4900 1.5445 2.6724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597540708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:48 Heat of formation + Delta-G solvation = -112.329829 kcal Electronic energy + Delta-G solvation = -20619.120706 eV Core-core repulsion = 17625.772180 eV Total energy + Delta-G solvation = -2993.348526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26296 -39.44658 -37.09787 -35.84320 -34.54086 -32.57104 -31.27982 -29.07563 -27.56494 -27.27379 -25.01865 -24.17960 -23.19309 -21.15538 -19.77448 -18.39540 -18.12887 -17.25581 -16.77946 -16.64685 -16.48403 -15.93868 -15.36009 -14.81281 -14.69088 -14.49081 -14.25349 -13.99449 -13.71125 -13.62849 -13.28603 -12.95080 -12.81733 -12.69505 -12.51447 -12.46385 -12.26876 -12.18166 -12.10815 -11.75860 -11.53158 -11.25083 -11.05962 -10.65995 -10.58384 -10.21677 -9.35646 -8.16979 -6.31103 1.38523 1.40956 1.52625 1.93087 2.30165 2.44528 2.94171 3.11142 3.72037 3.81407 3.97423 4.11498 4.22812 4.34026 4.47383 4.48870 4.51963 4.60855 4.63648 4.71370 4.80141 4.84031 4.88826 4.95581 4.98192 5.00220 5.11008 5.17839 5.25121 5.41324 5.46033 5.58805 5.63215 5.82715 5.87311 6.16694 6.37188 6.62410 6.71669 7.34398 7.50923 8.88368 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.007464 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.531516 B = 3750.314171 C = 4062.655925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.095 0.905 5 C 0.081 3.919 6 N -0.606 5.606 7 C 0.527 3.473 8 O -0.604 6.604 9 C 0.029 3.971 10 H 0.045 0.955 11 C -0.118 4.118 12 C -0.518 4.518 13 H 0.036 0.964 14 C 0.027 3.973 15 N -0.906 5.906 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.278 1.278 19 H -0.268 1.268 20 C 0.104 3.896 21 C -0.118 4.118 22 C -0.083 4.083 23 H 0.107 0.893 24 C -0.136 4.136 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 9.338 14.199 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C 0.020 3.980 4 H 0.113 0.887 5 C -0.042 4.042 6 N -0.338 5.338 7 C 0.319 3.681 8 O -0.486 6.486 9 C 0.008 3.992 10 H 0.063 0.937 11 C -0.176 4.176 12 C -0.556 4.556 13 H 0.054 0.946 14 C -0.173 4.173 15 N -0.545 5.545 16 Si 0.781 3.219 17 H -0.204 1.204 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.018 4.018 21 C -0.156 4.156 22 C -0.101 4.101 23 H 0.125 0.875 24 C -0.193 4.193 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.856 9.153 13.857 16.851 hybrid contribution -0.444 -0.988 -0.358 1.141 sum -3.300 8.164 13.500 16.118 Atomic orbital electron populations 1.22827 0.80775 1.02783 1.00203 1.87987 1.20256 1.28602 1.94863 1.22723 0.96319 0.85046 0.93910 0.88711 1.22238 0.93104 0.94305 0.94522 1.48020 1.16652 1.47299 1.21873 1.21567 0.89325 0.76747 0.80496 1.90458 1.25866 1.64096 1.68208 1.18845 0.92711 0.94524 0.93123 0.93720 1.21512 1.00034 0.98447 0.97642 1.20833 1.15226 0.92089 1.27479 0.94610 1.25552 0.94536 1.02598 0.94585 1.69959 1.17951 1.35669 1.30884 0.85545 0.78185 0.80046 0.78141 1.20359 1.20348 1.19282 1.21909 0.83801 1.02233 0.93859 1.21815 1.00574 0.99031 0.94209 1.21289 0.92956 1.00540 0.95354 0.87458 1.21699 1.02341 1.01235 0.94075 0.91421 0.95311 0.90319 0.91861 0.88449 0.90682 0.96135 0.95574 0.92325 0.90589 0.89419 0.88755 0.93899 0.93977 0.91294 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.82 113.37 1.23 2.04 16 2 O -0.40 -13.04 8.93 -148.98 -1.33 -14.37 16 3 C 0.08 2.02 2.36 30.67 0.07 2.09 16 4 H 0.10 1.83 7.79 -2.38 -0.02 1.81 16 5 C 0.08 2.54 6.08 86.36 0.53 3.06 16 6 N -0.61 -23.78 2.91 -818.91 -2.39 -26.17 16 7 C 0.53 26.30 6.63 87.66 0.58 26.89 16 8 O -0.60 -33.61 15.58 -3.03 -0.05 -33.66 16 9 C 0.03 1.54 1.84 -12.29 -0.02 1.52 16 10 H 0.04 2.35 6.20 -2.39 -0.01 2.34 16 11 C -0.12 -6.30 8.78 71.98 0.63 -5.66 16 12 C -0.52 -29.75 8.42 25.60 0.22 -29.54 16 13 H 0.04 2.17 7.74 -2.91 -0.02 2.15 16 14 C 0.03 1.52 5.29 84.65 0.45 1.97 16 15 N -0.91 -50.92 11.29 21.45 0.24 -50.68 16 16 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.10 3.45 6.15 86.36 0.53 3.98 16 21 C -0.12 -3.32 5.22 30.67 0.16 -3.16 16 22 C -0.08 -1.81 2.51 -10.77 -0.03 -1.84 16 23 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 24 C -0.14 -2.52 9.06 71.98 0.65 -1.87 16 25 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.03 0.82 7.80 -2.39 -0.02 0.80 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.31 6.66 -2.39 -0.02 2.29 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 4.19 5.95 -2.39 -0.01 4.18 16 31 H 0.02 1.10 7.68 -2.38 -0.02 1.09 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.08 3.04 5.52 -2.38 -0.01 3.02 16 35 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.53 7.61 -2.38 -0.02 1.51 16 38 H 0.04 0.96 7.72 -2.39 -0.02 0.94 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.29 314.95 4.50 -65.79 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.00 Total: 13.27 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 4.99 Total: -0.52 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.14 Total: -76.84 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -1.38 Total: -48.03 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.29 4.50 -65.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597540708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.537 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds