Wall clock time and date at job start Mon Mar 30 2020 04:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46849 * 2 1 4 4 C 1.50705 * 109.46903 * 240.00199 * 2 1 3 5 5 H 1.07997 * 120.00008 * 239.98932 * 4 2 1 6 6 C 1.37875 * 119.99772 * 59.72722 * 4 2 1 7 7 N 1.31514 * 120.00169 * 0.26732 * 6 4 2 8 8 Si 1.86808 * 119.99878 * 180.27572 * 6 4 2 9 9 H 1.48497 * 109.46737 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47006 * 119.99266 * 8 6 4 11 11 H 1.48503 * 109.47007 * 239.99360 * 8 6 4 12 12 C 1.50695 * 109.47550 * 119.99960 * 2 1 3 13 13 O 1.21284 * 119.99799 * 93.41745 * 12 2 1 14 14 N 1.34771 * 120.00117 * 273.41619 * 12 2 1 15 15 C 1.43426 * 120.63516 * 184.94579 * 14 12 2 16 16 C 1.54790 * 116.57419 * 269.49334 * 15 14 12 17 17 C 1.55196 * 108.80117 * 319.49038 * 16 15 14 18 18 H 1.08999 * 109.22473 * 82.33546 * 17 16 15 19 19 C 1.52998 * 109.25765 * 201.79402 * 17 16 15 20 20 O 1.39639 * 110.56630 * 322.07891 * 17 16 15 21 21 C 1.42371 * 108.63909 * 101.17316 * 20 17 16 22 22 H 1.08999 * 108.62143 * 28.56379 * 21 20 17 23 23 C 1.52999 * 108.51503 * 146.41590 * 21 20 17 24 24 C 1.46923 * 113.78768 * 267.45367 * 21 20 17 25 25 H 1.08997 * 109.47494 * 64.88359 * 1 2 3 26 26 H 1.08999 * 109.47012 * 184.88632 * 1 2 3 27 27 H 1.09000 * 109.47397 * 304.87940 * 1 2 3 28 28 H 0.97008 * 120.00120 * 180.02562 * 7 6 4 29 29 H 1.08998 * 108.12917 * 31.11118 * 15 14 12 30 30 H 1.08996 * 108.12954 * 147.60004 * 15 14 12 31 31 H 1.09006 * 109.66597 * 199.66233 * 16 15 14 32 32 H 1.09001 * 109.55475 * 79.25311 * 16 15 14 33 33 H 1.08999 * 109.47360 * 181.08301 * 19 17 16 34 34 H 1.09002 * 109.47478 * 301.08358 * 19 17 16 35 35 H 1.09002 * 109.46941 * 61.07882 * 19 17 16 36 36 H 1.08999 * 109.47518 * 184.16640 * 23 21 20 37 37 H 1.09005 * 109.47017 * 304.17241 * 23 21 20 38 38 H 1.09004 * 109.47035 * 64.16451 * 23 21 20 39 39 H 1.09000 * 109.98735 * 297.48456 * 24 21 20 40 40 H 1.09000 * 110.06941 * 176.16709 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6945 -0.2425 -2.4827 7 7 0.9383 0.8267 -2.6033 8 14 2.3107 -1.1276 -4.0081 9 1 3.1372 -2.2933 -3.6039 10 1 1.1523 -1.5960 -4.8105 11 1 3.1329 -0.1968 -4.8222 12 6 2.0324 -0.7104 1.2304 13 8 2.2936 -1.8938 1.1832 14 7 2.1915 -0.0306 2.3832 15 6 2.7674 -0.6661 3.5328 16 6 1.7841 -1.3629 4.5042 17 6 0.5216 -0.4740 4.6609 18 1 -0.1525 -0.6574 3.8242 19 6 -0.1881 -0.8314 5.9683 20 8 0.8727 0.8774 4.6818 21 6 0.6093 1.4358 3.3989 22 1 -0.2100 0.8824 2.9399 23 6 0.1720 2.8904 3.5827 24 6 1.7636 1.4042 2.4905 25 1 -0.3634 0.4362 -0.9305 26 1 -0.3633 -1.0239 0.0875 27 1 -0.3634 0.5877 0.8430 28 1 0.7004 1.1556 -3.4844 29 1 3.4801 -1.4141 3.1855 30 1 3.3209 0.0863 4.0946 31 1 2.2603 -1.4953 5.4758 32 1 1.4989 -2.3342 4.1001 33 1 -1.0860 -0.2224 6.0726 34 1 -0.4637 -1.8859 5.9557 35 1 0.4800 -0.6405 6.8082 36 1 -0.1049 3.3115 2.6162 37 1 -0.6849 2.9300 4.2552 38 1 0.9942 3.4661 4.0077 39 1 2.5757 2.0057 2.8989 40 1 1.4776 1.7822 1.5089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598295574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:28 Heat of formation + Delta-G solvation = -82.638109 kcal Electronic energy + Delta-G solvation = -20607.546006 eV Core-core repulsion = 17615.485010 eV Total energy + Delta-G solvation = -2992.060996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32129 -38.26185 -34.81194 -34.38331 -33.59711 -30.65707 -30.55307 -28.69832 -26.15766 -25.21520 -24.06925 -22.11885 -21.55409 -20.63732 -18.39365 -16.82346 -16.42733 -16.17791 -15.71109 -14.90664 -14.54970 -14.51660 -13.94441 -13.61256 -13.19278 -12.99446 -12.73661 -12.58619 -12.41087 -12.06461 -11.98312 -11.60898 -11.48157 -11.39697 -11.06111 -10.89609 -10.69426 -10.65314 -10.51468 -10.46388 -10.26949 -10.02697 -9.47839 -9.00313 -8.60134 -8.30252 -8.09441 -6.06474 -4.09833 3.30339 3.37994 3.45428 3.56756 3.70118 3.92251 4.44422 4.86911 5.01126 5.10430 5.17049 5.21732 5.26869 5.35964 5.46164 5.57142 5.61797 5.65575 5.79011 5.83165 5.94752 6.01243 6.02345 6.06825 6.14421 6.20859 6.28874 6.34928 6.59457 6.81022 6.94632 7.16886 7.35406 7.42515 7.73643 7.95446 8.07739 8.34665 8.96453 9.22085 9.55389 11.00675 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031031 B = 0.006292 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.104586 B = 4449.177075 C = 4913.304710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.498 4.498 5 H 0.069 0.931 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.544 6.544 14 N -0.624 5.624 15 C 0.119 3.881 16 C -0.153 4.153 17 C 0.079 3.921 18 H 0.062 0.938 19 C -0.153 4.153 20 O -0.349 6.349 21 C 0.060 3.940 22 H 0.068 0.932 23 C -0.153 4.153 24 C 0.089 3.911 25 H 0.097 0.903 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 3.386 13.834 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.087 0.913 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.420 6.420 14 N -0.359 5.359 15 C -0.006 4.006 16 C -0.193 4.193 17 C 0.020 3.980 18 H 0.080 0.920 19 C -0.210 4.210 20 O -0.268 6.268 21 C 0.002 3.998 22 H 0.086 0.914 23 C -0.211 4.211 24 C -0.034 4.034 25 H 0.115 0.885 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.973 2.937 13.804 14.251 hybrid contribution 0.209 -0.538 -0.911 1.079 sum -1.764 2.399 12.893 13.232 Atomic orbital electron populations 1.21747 0.96308 0.99187 1.01740 1.18888 0.94192 0.96617 0.89342 0.93489 1.21117 1.30916 1.12519 0.89073 0.91279 1.24931 0.95083 0.95068 0.99073 1.69860 1.37009 1.23130 1.23498 0.86406 0.78659 0.79793 0.82469 1.19600 1.20958 1.21008 1.22038 0.75189 0.87325 0.84085 1.90529 1.50296 1.16387 1.84758 1.48320 1.64732 1.11640 1.11245 1.20631 0.95063 0.97576 0.87308 1.23247 0.97059 0.99378 0.99568 1.22121 0.95319 0.82626 0.97920 0.92008 1.21994 1.00406 1.01319 0.97290 1.87639 1.86240 1.22402 1.30504 1.21520 0.97590 0.95887 0.84818 0.91432 1.21941 1.01905 0.94532 1.02702 1.21873 0.97175 0.82669 1.01643 0.88461 0.95062 0.97005 0.92945 0.91374 0.91967 0.90829 0.91103 0.92390 0.91695 0.92080 0.90820 0.91996 0.91859 0.90688 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.90 37.16 0.33 -2.73 16 2 C 0.03 0.76 1.79 -92.93 -0.17 0.59 16 3 H 0.05 1.17 6.39 -51.93 -0.33 0.84 16 4 C -0.50 -14.08 8.33 -34.44 -0.29 -14.37 16 5 H 0.07 2.08 7.06 -52.49 -0.37 1.70 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 7 N -0.90 -24.72 11.28 55.43 0.63 -24.09 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 12.17 6.76 -10.99 -0.07 12.09 16 13 O -0.54 -14.44 15.49 5.55 0.09 -14.35 16 14 N -0.62 -11.64 2.59 -175.31 -0.45 -12.10 16 15 C 0.12 1.98 4.99 -4.72 -0.02 1.95 16 16 C -0.15 -2.20 6.14 -24.63 -0.15 -2.35 16 17 C 0.08 1.09 2.82 -25.57 -0.07 1.02 16 18 H 0.06 0.95 6.66 -51.93 -0.35 0.60 16 19 C -0.15 -1.69 9.45 37.16 0.35 -1.34 16 20 O -0.35 -4.96 9.43 -31.93 -0.30 -5.26 16 21 C 0.06 0.84 2.61 -29.64 -0.08 0.76 16 22 H 0.07 1.02 5.73 -51.93 -0.30 0.72 16 23 C -0.15 -1.70 9.41 37.16 0.35 -1.35 16 24 C 0.09 1.37 5.01 -4.93 -0.02 1.34 16 25 H 0.10 2.46 5.94 -51.93 -0.31 2.15 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.01 0.22 6.49 -51.93 -0.34 -0.12 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.07 1.23 7.43 -51.93 -0.39 0.85 16 30 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 31 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 1.84 5.28 -51.93 -0.27 1.57 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -30.62 309.70 -6.76 -37.38 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.42 Total: -0.02 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.06 Total: -2.85 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.17 Total: -36.19 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.22 Total: -19.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.62 -6.76 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598295574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.260 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds