Wall clock time and date at job start Mon Mar 30 2020 04:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46849 * 2 1 4 4 C 1.50705 * 109.46903 * 240.00199 * 2 1 3 5 5 H 1.07997 * 120.00008 * 239.98932 * 4 2 1 6 6 C 1.37875 * 119.99772 * 59.72722 * 4 2 1 7 7 N 1.31514 * 120.00169 * 0.26732 * 6 4 2 8 8 Si 1.86808 * 119.99878 * 180.27572 * 6 4 2 9 9 H 1.48497 * 109.46737 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47006 * 119.99266 * 8 6 4 11 11 H 1.48503 * 109.47007 * 239.99360 * 8 6 4 12 12 C 1.50695 * 109.47550 * 119.99960 * 2 1 3 13 13 O 1.21284 * 119.99799 * 93.41745 * 12 2 1 14 14 N 1.34771 * 120.00117 * 273.41619 * 12 2 1 15 15 C 1.43426 * 120.63516 * 184.94579 * 14 12 2 16 16 C 1.54790 * 116.57419 * 269.49334 * 15 14 12 17 17 C 1.55196 * 108.80117 * 319.49038 * 16 15 14 18 18 H 1.08999 * 109.22473 * 82.33546 * 17 16 15 19 19 C 1.52998 * 109.25765 * 201.79402 * 17 16 15 20 20 O 1.39639 * 110.56630 * 322.07891 * 17 16 15 21 21 C 1.42371 * 108.63909 * 101.17316 * 20 17 16 22 22 H 1.08999 * 108.62143 * 28.56379 * 21 20 17 23 23 C 1.52999 * 108.51503 * 146.41590 * 21 20 17 24 24 C 1.46923 * 113.78768 * 267.45367 * 21 20 17 25 25 H 1.08997 * 109.47494 * 64.88359 * 1 2 3 26 26 H 1.08999 * 109.47012 * 184.88632 * 1 2 3 27 27 H 1.09000 * 109.47397 * 304.87940 * 1 2 3 28 28 H 0.97008 * 120.00120 * 180.02562 * 7 6 4 29 29 H 1.08998 * 108.12917 * 31.11118 * 15 14 12 30 30 H 1.08996 * 108.12954 * 147.60004 * 15 14 12 31 31 H 1.09006 * 109.66597 * 199.66233 * 16 15 14 32 32 H 1.09001 * 109.55475 * 79.25311 * 16 15 14 33 33 H 1.08999 * 109.47360 * 181.08301 * 19 17 16 34 34 H 1.09002 * 109.47478 * 301.08358 * 19 17 16 35 35 H 1.09002 * 109.46941 * 61.07882 * 19 17 16 36 36 H 1.08999 * 109.47518 * 184.16640 * 23 21 20 37 37 H 1.09005 * 109.47017 * 304.17241 * 23 21 20 38 38 H 1.09004 * 109.47035 * 64.16451 * 23 21 20 39 39 H 1.09000 * 109.98735 * 297.48456 * 24 21 20 40 40 H 1.09000 * 110.06941 * 176.16709 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6945 -0.2425 -2.4827 7 7 0.9383 0.8267 -2.6033 8 14 2.3107 -1.1276 -4.0081 9 1 3.1372 -2.2933 -3.6039 10 1 1.1523 -1.5960 -4.8105 11 1 3.1329 -0.1968 -4.8222 12 6 2.0324 -0.7104 1.2304 13 8 2.2936 -1.8938 1.1832 14 7 2.1915 -0.0306 2.3832 15 6 2.7674 -0.6661 3.5328 16 6 1.7841 -1.3629 4.5042 17 6 0.5216 -0.4740 4.6609 18 1 -0.1525 -0.6574 3.8242 19 6 -0.1881 -0.8314 5.9683 20 8 0.8727 0.8774 4.6818 21 6 0.6093 1.4358 3.3989 22 1 -0.2100 0.8824 2.9399 23 6 0.1720 2.8904 3.5827 24 6 1.7636 1.4042 2.4905 25 1 -0.3634 0.4362 -0.9305 26 1 -0.3633 -1.0239 0.0875 27 1 -0.3634 0.5877 0.8430 28 1 0.7004 1.1556 -3.4844 29 1 3.4801 -1.4141 3.1855 30 1 3.3209 0.0863 4.0946 31 1 2.2603 -1.4953 5.4758 32 1 1.4989 -2.3342 4.1001 33 1 -1.0860 -0.2224 6.0726 34 1 -0.4637 -1.8859 5.9557 35 1 0.4800 -0.6405 6.8082 36 1 -0.1049 3.3115 2.6162 37 1 -0.6849 2.9300 4.2552 38 1 0.9942 3.4661 4.0077 39 1 2.5757 2.0057 2.8989 40 1 1.4776 1.7822 1.5089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598295574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:28 Heat of formation + Delta-G solvation = -101.472584 kcal Electronic energy + Delta-G solvation = -20608.362730 eV Core-core repulsion = 17615.485010 eV Total energy + Delta-G solvation = -2992.877721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68117 -39.83559 -36.28447 -36.02086 -35.18428 -32.59044 -31.66119 -29.96629 -27.38266 -27.26935 -25.53619 -23.64893 -22.69219 -22.00111 -19.96714 -18.55464 -17.99496 -17.74999 -17.26757 -16.42559 -16.15183 -15.88721 -15.45762 -14.96223 -14.78037 -14.50418 -14.09424 -13.97253 -13.53921 -13.35778 -13.05787 -13.03046 -12.85382 -12.81784 -12.69048 -12.57039 -12.55450 -12.29968 -12.08997 -12.02973 -11.67302 -11.60251 -11.05135 -10.68294 -10.58333 -10.22040 -9.61476 -8.17602 -6.28267 1.38233 1.40585 1.53239 1.85352 2.09882 2.44284 2.83020 3.11393 3.67338 3.87643 3.92387 4.01570 4.09761 4.21270 4.27949 4.39132 4.44790 4.59586 4.63913 4.73251 4.77190 4.81417 4.87849 4.89521 4.96800 4.97992 5.03002 5.05522 5.15155 5.27081 5.33911 5.40542 5.65783 5.76049 5.92983 6.16052 6.24989 6.50738 6.76978 7.36160 7.47000 8.88017 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031031 B = 0.006292 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.104586 B = 4449.177075 C = 4913.304710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.520 3.480 13 O -0.588 6.588 14 N -0.617 5.617 15 C 0.113 3.887 16 C -0.148 4.148 17 C 0.077 3.923 18 H 0.041 0.959 19 C -0.146 4.146 20 O -0.348 6.348 21 C 0.061 3.939 22 H 0.053 0.947 23 C -0.146 4.146 24 C 0.086 3.914 25 H 0.078 0.922 26 H 0.015 0.985 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 4.689 15.146 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.567 4.567 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.350 5.350 15 C -0.012 4.012 16 C -0.187 4.187 17 C 0.018 3.982 18 H 0.060 0.940 19 C -0.203 4.203 20 O -0.266 6.266 21 C 0.003 3.997 22 H 0.071 0.929 23 C -0.204 4.204 24 C -0.035 4.035 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.317 4.292 15.152 15.918 hybrid contribution 0.339 -0.900 -1.278 1.600 sum -1.978 3.392 13.874 14.419 Atomic orbital electron populations 1.21549 0.95312 0.98574 1.02122 1.18805 0.94983 0.96141 0.89218 0.93567 1.21222 1.31799 1.12441 0.91273 0.94191 1.25540 0.95089 0.95730 1.01215 1.69918 1.36820 1.23407 1.24408 0.85565 0.78390 0.78596 0.79463 1.20731 1.19939 1.19582 1.21732 0.75202 0.86763 0.85138 1.90497 1.52543 1.18097 1.85672 1.48276 1.63303 1.12876 1.10500 1.20839 0.95528 0.97855 0.86951 1.23219 0.97105 0.98366 0.99981 1.22155 0.94683 0.82451 0.98882 0.94043 1.21946 1.00548 1.02030 0.95777 1.87645 1.86311 1.22375 1.30298 1.21479 0.96147 0.97642 0.84447 0.92861 1.21906 1.02686 0.92288 1.03495 1.22132 0.98795 0.80676 1.01910 0.90351 0.96599 0.93617 0.92395 0.93565 0.89545 0.88027 0.92812 0.91682 0.90808 0.90970 0.90171 0.90991 0.90677 0.88281 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.90 71.98 0.64 -4.88 16 2 C 0.03 1.50 1.79 -12.29 -0.02 1.47 16 3 H 0.05 2.33 6.39 -2.39 -0.02 2.31 16 4 C -0.53 -30.82 8.33 25.60 0.21 -30.61 16 5 H 0.04 2.51 7.06 -2.91 -0.02 2.49 16 6 C 0.02 1.33 5.29 84.65 0.45 1.77 16 7 N -0.91 -49.93 11.28 21.45 0.24 -49.68 16 8 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 9 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 C 0.52 24.88 6.76 87.66 0.59 25.47 16 13 O -0.59 -32.59 15.49 -3.04 -0.05 -32.63 16 14 N -0.62 -22.83 2.59 -826.95 -2.14 -24.97 16 15 C 0.11 3.64 4.99 87.56 0.44 4.08 16 16 C -0.15 -4.05 6.14 31.96 0.20 -3.86 16 17 C 0.08 2.00 2.82 31.35 0.09 2.08 16 18 H 0.04 1.25 6.66 -2.39 -0.02 1.23 16 19 C -0.15 -2.83 9.45 71.98 0.68 -2.15 16 20 O -0.35 -8.95 9.43 -137.18 -1.29 -10.24 16 21 C 0.06 1.57 2.61 28.71 0.08 1.65 16 22 H 0.05 1.53 5.73 -2.39 -0.01 1.52 16 23 C -0.15 -2.80 9.41 71.98 0.68 -2.13 16 24 C 0.09 2.51 5.01 83.79 0.42 2.93 16 25 H 0.08 3.99 5.94 -2.39 -0.01 3.98 16 26 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.04 1.77 6.49 -2.39 -0.02 1.76 16 28 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 29 H 0.05 1.70 7.43 -2.39 -0.02 1.68 16 30 H 0.09 2.38 7.99 -2.39 -0.02 2.36 16 31 H 0.10 2.22 7.98 -2.38 -0.02 2.20 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 40 H 0.10 3.26 5.28 -2.39 -0.01 3.25 16 Total: -1.00 -66.87 309.70 4.24 -62.63 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.01 Total: 12.35 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 4.45 Total: -4.17 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.90 Total: -74.66 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.34 Total: -42.87 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.87 4.24 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598295574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.843 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds