Wall clock time and date at job start Mon Mar 30 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.33272 * 2 1 4 4 O 1.44417 * 110.37569 * 122.25901 * 2 1 3 5 5 C 1.44421 * 105.28076 * 159.45051 * 4 2 1 6 6 H 1.08999 * 110.37211 * 78.42680 * 5 4 2 7 7 C 1.52997 * 110.37762 * 200.65672 * 5 4 2 8 8 C 1.54486 * 104.89789 * 319.54652 * 5 4 2 9 9 H 1.09001 * 110.50570 * 265.27009 * 8 5 4 10 10 C 1.53001 * 110.50893 * 142.56638 * 8 5 4 11 11 C 1.54483 * 110.46365 * 237.69421 * 2 1 3 12 12 H 1.09003 * 110.51130 * 335.92542 * 11 2 1 13 13 N 1.46500 * 110.51349 * 98.49747 * 11 2 1 14 14 C 1.34778 * 119.99626 * 273.54751 * 13 11 2 15 15 O 1.21275 * 120.00408 * 359.97438 * 14 13 11 16 16 C 1.50704 * 119.99834 * 179.97438 * 14 13 11 17 17 C 1.52999 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47116 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99742 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00028 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47333 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47086 * 119.99819 * 22 20 18 25 25 H 1.48502 * 109.47173 * 239.99669 * 22 20 18 26 26 H 1.09000 * 109.46593 * 299.19233 * 1 2 3 27 27 H 1.09001 * 109.47069 * 59.19712 * 1 2 3 28 28 H 1.08993 * 109.47135 * 179.20055 * 1 2 3 29 29 H 1.09002 * 109.47153 * 57.04746 * 7 5 4 30 30 H 1.09001 * 109.46832 * 297.04937 * 7 5 4 31 31 H 1.09004 * 109.47261 * 177.04918 * 7 5 4 32 32 H 1.09000 * 109.47510 * 61.45212 * 10 8 5 33 33 H 1.09004 * 109.46523 * 181.44972 * 10 8 5 34 34 H 1.08996 * 109.47094 * 301.44618 * 10 8 5 35 35 H 0.96995 * 120.00105 * 93.54002 * 13 11 2 36 36 H 1.09004 * 109.46814 * 299.99834 * 16 14 13 37 37 H 1.08996 * 109.47231 * 59.99695 * 16 14 13 38 38 H 1.08994 * 109.47180 * 299.99489 * 17 16 14 39 39 H 1.08996 * 109.46992 * 60.00313 * 17 16 14 40 40 H 0.96993 * 119.99918 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0329 -0.7226 1.1448 5 6 3.3883 -1.0841 0.8015 6 1 4.0524 -0.2289 0.9263 7 6 3.8621 -2.2555 1.6643 8 6 3.3236 -1.5022 -0.6843 9 1 3.2045 -2.5822 -0.7723 10 6 4.5779 -1.0376 -1.4271 11 6 2.0702 -0.7735 -1.2233 12 1 1.3304 -1.4909 -1.5786 13 7 2.4396 0.1543 -2.2952 14 6 1.5098 0.5670 -3.1794 15 8 0.3676 0.1699 -3.0880 16 6 1.8897 1.5219 -4.2817 17 6 0.6595 1.8268 -5.1387 18 6 1.0392 2.7822 -6.2406 19 1 2.0562 3.1367 -6.3212 20 6 0.0882 3.2045 -7.1450 21 7 -1.1504 2.7732 -7.0465 22 14 0.5587 4.3893 -8.5104 23 1 2.0020 4.7213 -8.4022 24 1 0.2931 3.7571 -9.8277 25 1 -0.2452 5.6317 -8.3866 26 1 -0.3632 0.5013 0.8972 27 1 -0.3633 0.5263 -0.8827 28 1 -0.3633 -1.0275 -0.0143 29 1 3.1819 -3.0979 1.5384 30 1 3.8760 -1.9530 2.7114 31 1 4.8658 -2.5499 1.3577 32 1 5.4565 -1.5091 -0.9868 33 1 4.5029 -1.3184 -2.4776 34 1 4.6678 0.0456 -1.3461 35 1 3.3532 0.4717 -2.3684 36 1 2.2683 2.4468 -3.8466 37 1 2.6624 1.0700 -4.9036 38 1 0.2814 0.9018 -5.5737 39 1 -0.1134 2.2786 -4.5170 40 1 -1.8194 3.0700 -7.6830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600443986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:34 Heat of formation + Delta-G solvation = -124.155896 kcal Electronic energy + Delta-G solvation = -19511.030329 eV Core-core repulsion = 16517.168986 eV Total energy + Delta-G solvation = -2993.861343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.63098 -39.95913 -36.09849 -35.53846 -34.40414 -33.18812 -31.97622 -30.25785 -28.22175 -27.15005 -24.27014 -23.49765 -22.55781 -21.39747 -20.86903 -18.86201 -17.68155 -17.60715 -17.07181 -16.53244 -16.40794 -15.97540 -15.88649 -14.98801 -14.70506 -14.29557 -14.18304 -14.00476 -13.86633 -13.36704 -13.25744 -13.13716 -12.97484 -12.85574 -12.74190 -12.47128 -12.38042 -12.02323 -11.91148 -11.85838 -11.62382 -11.47423 -11.26692 -10.83351 -10.69183 -10.56982 -10.01068 -8.17454 -6.31216 1.42747 1.43901 1.57134 1.71642 2.16151 2.44302 2.88372 3.15841 3.36716 3.58203 3.78335 3.94931 4.08068 4.14213 4.31202 4.37993 4.44837 4.49071 4.53518 4.57511 4.62349 4.69205 4.84465 4.93956 4.96157 5.06237 5.08495 5.13536 5.20166 5.29542 5.33665 5.44393 5.52358 5.65136 5.86551 5.90632 6.18756 6.59422 6.87794 7.35710 7.39397 8.95299 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.004073 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.122985 B = 6872.628043 C = 7299.003604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.071 0.929 4 O -0.384 6.384 5 C 0.067 3.933 6 H 0.083 0.917 7 C -0.143 4.143 8 C -0.120 4.120 9 H 0.098 0.902 10 C -0.149 4.149 11 C 0.116 3.884 12 H 0.075 0.925 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.577 6.577 16 C -0.120 4.120 17 C 0.042 3.958 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.973 3.027 23 H -0.252 1.252 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.417 0.583 36 H 0.103 0.897 37 H 0.104 0.896 38 H -0.017 1.017 39 H -0.017 1.017 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.825 -7.897 15.686 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.008 3.992 3 H 0.089 0.911 4 O -0.303 6.303 5 C 0.010 3.990 6 H 0.100 0.900 7 C -0.200 4.200 8 C -0.139 4.139 9 H 0.117 0.883 10 C -0.206 4.206 11 C 0.010 3.990 12 H 0.093 0.907 13 N -0.368 5.368 14 C 0.298 3.702 15 O -0.456 6.456 16 C -0.159 4.159 17 C 0.005 3.995 18 C -0.579 4.579 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.176 1.176 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.258 0.742 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.764 -8.223 15.888 23.196 hybrid contribution -0.320 0.677 -0.988 1.240 sum 14.444 -7.546 14.900 22.082 Atomic orbital electron populations 1.21737 0.93608 1.02550 1.02075 1.23300 0.95315 0.95625 0.84983 0.91076 1.89148 1.28531 1.74739 1.37925 1.23302 0.83861 0.98620 0.93191 0.89962 1.21825 1.02254 0.96195 0.99693 1.22841 0.94314 1.01412 0.95362 0.88342 1.21812 0.96073 1.01953 1.00770 1.22349 0.97953 0.91530 0.87183 0.90696 1.46160 1.13486 1.47920 1.29246 1.21378 0.84920 0.81062 0.82790 1.90650 1.22060 1.58089 1.74773 1.21641 1.00887 0.98503 0.94917 1.18683 0.92524 0.94793 0.93526 1.21753 0.96548 1.27160 1.12468 0.90606 1.26128 0.94767 0.98593 1.00986 1.70184 1.03443 1.46060 1.38086 0.85286 0.79160 0.77910 0.77957 1.17554 1.20690 1.20732 0.91415 0.92401 0.92339 0.92329 0.91761 0.88721 0.89363 0.91603 0.91349 0.74201 0.87864 0.87762 0.99896 0.99899 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.41 71.98 0.68 -3.58 16 2 C 0.07 1.77 3.64 31.10 0.11 1.88 16 3 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 4 O -0.38 -9.48 11.04 -148.98 -1.64 -11.13 16 5 C 0.07 1.14 3.47 31.10 0.11 1.25 16 6 H 0.08 1.20 7.87 -2.39 -0.02 1.18 16 7 C -0.14 -1.80 9.52 71.98 0.69 -1.12 16 8 C -0.12 -2.03 3.27 -9.72 -0.03 -2.06 16 9 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 10 C -0.15 -1.75 7.80 71.98 0.56 -1.19 16 11 C 0.12 2.93 2.95 46.07 0.14 3.07 16 12 H 0.07 2.32 7.39 -2.39 -0.02 2.30 16 13 N -0.71 -18.59 4.71 -437.44 -2.06 -20.65 16 14 C 0.51 19.12 7.82 87.66 0.69 19.80 16 15 O -0.58 -27.31 14.08 -3.01 -0.04 -27.35 16 16 C -0.12 -4.69 5.64 29.85 0.17 -4.52 16 17 C 0.04 2.34 4.26 29.85 0.13 2.47 16 18 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 19 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 20 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 21 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 22 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 23 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.08 6.61 -2.39 -0.02 2.06 16 28 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.85 7.94 -2.39 -0.02 0.83 16 34 H 0.07 0.71 6.80 -2.39 -0.02 0.70 16 35 H 0.42 7.94 5.76 -92.71 -0.53 7.40 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 39 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -75.10 321.98 2.97 -72.14 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.47 Total: 14.33 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.93 Total: -14.33 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -1.77 Total: -79.83 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.69 Total: -38.48 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.10 2.97 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600443986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.020 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds