Wall clock time and date at job start Mon Mar 30 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 N 1.46499 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00099 * 268.05069 * 4 3 2 6 6 H 1.08005 * 119.99874 * 144.72021 * 5 4 3 7 7 C 1.38946 * 120.00059 * 324.72228 * 5 4 3 8 8 N 1.31411 * 119.99846 * 337.53781 * 7 5 4 9 9 Si 1.86800 * 120.00222 * 157.53091 * 7 5 4 10 10 H 1.48503 * 109.46882 * 89.99719 * 9 7 5 11 11 H 1.48493 * 109.47540 * 210.00336 * 9 7 5 12 12 H 1.48503 * 109.47107 * 330.00569 * 9 7 5 13 13 C 1.34774 * 120.00123 * 88.05394 * 4 3 2 14 14 O 1.21295 * 120.00265 * 0.02562 * 13 4 3 15 15 C 1.50707 * 120.00337 * 179.97438 * 13 4 3 16 16 H 1.09000 * 110.74803 * 335.06118 * 15 13 4 17 17 C 1.55305 * 110.84645 * 211.58582 * 15 13 4 18 18 C 1.54949 * 100.94264 * 275.73629 * 17 15 13 19 19 H 1.09002 * 110.30348 * 82.47037 * 18 17 15 20 20 C 1.52991 * 110.30956 * 204.54505 * 18 17 15 21 21 O 1.43651 * 105.22360 * 323.51311 * 18 17 15 22 22 C 1.43468 * 109.83827 * 24.44330 * 21 18 17 23 23 H 1.08995 * 109.81463 * 238.75637 * 22 21 18 24 24 C 1.53004 * 109.81708 * 117.80630 * 22 21 18 25 25 H 1.08991 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47648 * 300.00724 * 1 2 3 27 27 H 1.09008 * 109.46818 * 59.99966 * 1 2 3 28 28 H 1.08996 * 109.47204 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.46590 * 119.99372 * 2 1 3 30 30 H 1.08996 * 109.47472 * 59.99684 * 3 2 1 31 31 H 1.09002 * 109.46875 * 299.99198 * 3 2 1 32 32 H 0.97006 * 119.99594 * 180.02562 * 8 7 5 33 33 H 1.09000 * 111.12041 * 157.82051 * 17 15 13 34 34 H 1.08992 * 111.16320 * 33.67277 * 17 15 13 35 35 H 1.08997 * 109.47710 * 58.61034 * 20 18 17 36 36 H 1.09003 * 109.47217 * 178.61465 * 20 18 17 37 37 H 1.08997 * 109.47221 * 298.60753 * 20 18 17 38 38 H 1.08996 * 109.47162 * 305.98221 * 24 22 21 39 39 H 1.09006 * 109.47274 * 65.98137 * 24 22 21 40 40 H 1.09002 * 109.47554 * 185.98165 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4830 1.1875 6 1 5.1212 0.9460 1.2922 7 6 3.6863 2.2149 2.2558 8 7 2.8387 3.1954 2.0389 9 14 4.2137 1.8050 4.0003 10 1 5.4215 2.5947 4.3506 11 1 3.1142 2.1382 4.9411 12 1 4.5248 0.3561 4.0958 13 6 4.1794 1.4026 -1.1656 14 8 3.5734 1.3673 -2.2157 15 6 5.6864 1.4031 -1.1650 16 1 6.0721 1.8645 -0.2559 17 6 6.2393 2.1206 -2.4266 18 6 6.2027 0.9673 -3.4607 19 1 5.2022 0.8686 -3.8818 20 6 7.2236 1.2181 -4.5722 21 8 6.5510 -0.2138 -2.7209 22 6 6.2408 -0.0279 -1.3326 23 1 7.1433 -0.1473 -0.7332 24 6 5.1869 -1.0473 -0.8955 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 2.4873 3.7066 2.7847 33 1 7.2588 2.4705 -2.2643 34 1 5.5887 2.9408 -2.7296 35 1 8.2199 1.3023 -4.1384 36 1 7.2036 0.3877 -5.2780 37 1 6.9745 2.1430 -5.0924 38 1 4.3229 -0.9828 -1.5569 39 1 5.6091 -2.0510 -0.9462 40 1 4.8778 -0.8344 0.1278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686484467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:59 Heat of formation + Delta-G solvation = -94.879655 kcal Electronic energy + Delta-G solvation = -20720.249048 eV Core-core repulsion = 17727.657218 eV Total energy + Delta-G solvation = -2992.591830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92226 -37.69704 -35.03901 -32.94281 -32.33037 -31.72592 -31.01617 -28.34018 -26.04682 -24.83841 -23.49039 -21.89837 -20.51317 -20.11451 -18.91032 -17.18051 -16.38218 -15.53191 -15.18113 -14.64171 -14.31006 -14.08614 -13.76947 -13.64978 -13.07531 -12.78486 -12.56062 -12.37668 -11.93138 -11.76873 -11.54131 -11.46620 -11.33106 -11.28970 -11.09422 -10.93982 -10.82616 -10.58857 -10.38575 -10.31468 -10.18011 -10.14639 -9.72495 -9.11234 -8.96811 -8.33524 -7.53347 -6.43341 -4.10394 3.05867 3.17482 3.20926 3.79966 4.05165 4.28243 4.68358 4.89257 5.16416 5.26019 5.45927 5.67738 5.69186 5.74436 5.78879 5.85157 5.89724 5.94126 6.05399 6.10052 6.24552 6.33738 6.37215 6.42776 6.44820 6.50930 6.55113 6.61004 6.68000 6.78939 6.79890 6.87138 7.11393 7.32913 7.45817 7.58671 7.89900 8.32697 9.03346 9.50302 9.93473 10.57440 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.008124 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.930482 B = 3445.826796 C = 4070.003968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.854 5.854 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.485 3.515 14 O -0.603 6.603 15 C -0.130 4.130 16 H 0.110 0.890 17 C -0.129 4.129 18 C 0.078 3.922 19 H 0.083 0.917 20 C -0.148 4.148 21 O -0.383 6.383 22 C 0.099 3.901 23 H 0.076 0.924 24 C -0.168 4.168 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.270 0.730 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -3.195 -2.911 5.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.152 5.152 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.490 5.490 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.274 3.726 14 O -0.490 6.490 15 C -0.151 4.151 16 H 0.128 0.872 17 C -0.167 4.167 18 C 0.021 3.979 19 H 0.101 0.899 20 C -0.205 4.205 21 O -0.303 6.303 22 C 0.041 3.959 23 H 0.094 0.906 24 C -0.225 4.225 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.316 -3.238 -3.368 5.729 hybrid contribution 0.131 0.110 1.235 1.247 sum 3.446 -3.128 -2.133 5.120 Atomic orbital electron populations 1.21657 0.96670 1.00417 1.01347 1.21822 0.94628 0.99468 1.01251 1.21433 0.81565 0.94568 1.03436 1.43447 1.04632 1.62647 1.04429 1.19361 1.08410 1.30334 0.88815 0.89236 1.25329 0.96959 0.93497 1.00312 1.69951 1.30804 1.15865 1.32400 0.86235 0.78465 0.79359 0.82476 1.20240 1.20688 1.19239 1.19879 0.88353 0.80395 0.83993 1.90501 1.70099 1.56614 1.31767 1.22711 0.95696 0.96226 1.00465 0.87198 1.23096 1.00732 0.98600 0.94263 1.22977 0.98520 0.84153 0.92281 0.89889 1.21888 0.99085 1.01434 0.98106 1.88372 1.85181 1.38018 1.18762 1.22502 0.96948 0.93734 0.82745 0.90582 1.22264 0.99058 0.98162 1.03004 0.93652 0.93021 0.93194 0.92989 0.92333 0.87759 0.92994 0.92001 0.90935 0.89968 0.92473 0.92440 0.91634 0.91768 0.93090 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.70 6.25 -26.73 -0.17 -2.87 16 3 C 0.11 2.67 4.97 -4.04 -0.02 2.65 16 4 N -0.43 -10.51 2.39 -114.81 -0.27 -10.79 16 5 C -0.34 -8.23 7.46 -14.93 -0.11 -8.34 16 6 H 0.09 2.06 6.33 -52.48 -0.33 1.72 16 7 C 0.05 1.10 4.93 -17.47 -0.09 1.02 16 8 N -0.85 -21.85 11.40 55.50 0.63 -21.22 16 9 Si 0.91 18.75 29.61 -169.99 -5.03 13.72 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.49 11.45 4.57 -10.98 -0.05 11.40 16 14 O -0.60 -15.48 14.45 5.54 0.08 -15.40 16 15 C -0.13 -2.61 2.65 -89.82 -0.24 -2.85 16 16 H 0.11 2.22 6.62 -51.93 -0.34 1.88 16 17 C -0.13 -2.30 5.81 -24.48 -0.14 -2.45 16 18 C 0.08 1.38 3.69 -25.71 -0.09 1.29 16 19 H 0.08 1.67 7.06 -51.93 -0.37 1.31 16 20 C -0.15 -2.05 9.62 37.15 0.36 -1.69 16 21 O -0.38 -7.33 10.72 -35.23 -0.38 -7.71 16 22 C 0.10 1.85 4.09 -26.01 -0.11 1.74 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 24 C -0.17 -3.18 8.51 37.16 0.32 -2.86 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 2.59 5.41 -51.93 -0.28 2.31 16 31 H 0.05 1.28 7.48 -51.93 -0.39 0.89 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.07 1.11 8.06 -51.93 -0.42 0.70 16 34 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.36 7.10 -51.93 -0.37 1.00 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.59 6.35 -51.93 -0.33 1.26 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -27.46 314.42 -6.81 -34.28 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.60 Total: 7.40 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.03 Total: -5.02 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.36 Total: -32.01 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.30 Total: -23.10 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.46 -6.81 -34.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.603 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds