Wall clock time and date at job start Mon Mar 30 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 N 1.46499 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00099 * 268.05069 * 4 3 2 6 6 H 1.08005 * 119.99874 * 144.72021 * 5 4 3 7 7 C 1.38946 * 120.00059 * 324.72228 * 5 4 3 8 8 N 1.31411 * 119.99846 * 337.53781 * 7 5 4 9 9 Si 1.86800 * 120.00222 * 157.53091 * 7 5 4 10 10 H 1.48503 * 109.46882 * 89.99719 * 9 7 5 11 11 H 1.48493 * 109.47540 * 210.00336 * 9 7 5 12 12 H 1.48503 * 109.47107 * 330.00569 * 9 7 5 13 13 C 1.34774 * 120.00123 * 88.05394 * 4 3 2 14 14 O 1.21295 * 120.00265 * 0.02562 * 13 4 3 15 15 C 1.50707 * 120.00337 * 179.97438 * 13 4 3 16 16 H 1.09000 * 110.74803 * 335.06118 * 15 13 4 17 17 C 1.55305 * 110.84645 * 211.58582 * 15 13 4 18 18 C 1.54949 * 100.94264 * 275.73629 * 17 15 13 19 19 H 1.09002 * 110.30348 * 82.47037 * 18 17 15 20 20 C 1.52991 * 110.30956 * 204.54505 * 18 17 15 21 21 O 1.43651 * 105.22360 * 323.51311 * 18 17 15 22 22 C 1.43468 * 109.83827 * 24.44330 * 21 18 17 23 23 H 1.08995 * 109.81463 * 238.75637 * 22 21 18 24 24 C 1.53004 * 109.81708 * 117.80630 * 22 21 18 25 25 H 1.08991 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47648 * 300.00724 * 1 2 3 27 27 H 1.09008 * 109.46818 * 59.99966 * 1 2 3 28 28 H 1.08996 * 109.47204 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.46590 * 119.99372 * 2 1 3 30 30 H 1.08996 * 109.47472 * 59.99684 * 3 2 1 31 31 H 1.09002 * 109.46875 * 299.99198 * 3 2 1 32 32 H 0.97006 * 119.99594 * 180.02562 * 8 7 5 33 33 H 1.09000 * 111.12041 * 157.82051 * 17 15 13 34 34 H 1.08992 * 111.16320 * 33.67277 * 17 15 13 35 35 H 1.08997 * 109.47710 * 58.61034 * 20 18 17 36 36 H 1.09003 * 109.47217 * 178.61465 * 20 18 17 37 37 H 1.08997 * 109.47221 * 298.60753 * 20 18 17 38 38 H 1.08996 * 109.47162 * 305.98221 * 24 22 21 39 39 H 1.09006 * 109.47274 * 65.98137 * 24 22 21 40 40 H 1.09002 * 109.47554 * 185.98165 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4830 1.1875 6 1 5.1212 0.9460 1.2922 7 6 3.6863 2.2149 2.2558 8 7 2.8387 3.1954 2.0389 9 14 4.2137 1.8050 4.0003 10 1 5.4215 2.5947 4.3506 11 1 3.1142 2.1382 4.9411 12 1 4.5248 0.3561 4.0958 13 6 4.1794 1.4026 -1.1656 14 8 3.5734 1.3673 -2.2157 15 6 5.6864 1.4031 -1.1650 16 1 6.0721 1.8645 -0.2559 17 6 6.2393 2.1206 -2.4266 18 6 6.2027 0.9673 -3.4607 19 1 5.2022 0.8686 -3.8818 20 6 7.2236 1.2181 -4.5722 21 8 6.5510 -0.2138 -2.7209 22 6 6.2408 -0.0279 -1.3326 23 1 7.1433 -0.1473 -0.7332 24 6 5.1869 -1.0473 -0.8955 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 2.4873 3.7066 2.7847 33 1 7.2588 2.4705 -2.2643 34 1 5.5887 2.9408 -2.7296 35 1 8.2199 1.3023 -4.1384 36 1 7.2036 0.3877 -5.2780 37 1 6.9745 2.1430 -5.0924 38 1 4.3229 -0.9828 -1.5569 39 1 5.6091 -2.0510 -0.9462 40 1 4.8778 -0.8344 0.1278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686484467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:58 Heat of formation + Delta-G solvation = -110.176197 kcal Electronic energy + Delta-G solvation = -20720.912356 eV Core-core repulsion = 17727.657218 eV Total energy + Delta-G solvation = -2993.255138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55988 -39.39257 -36.90558 -34.62443 -33.84381 -33.31274 -32.71945 -29.72508 -27.76065 -26.64335 -24.95830 -23.48036 -22.07863 -21.69355 -20.71589 -18.83258 -18.17244 -17.11662 -16.84925 -16.39351 -16.02686 -15.70255 -15.37794 -15.18144 -14.60237 -14.41688 -14.03908 -13.70241 -13.47544 -13.35588 -13.20166 -13.01258 -12.87886 -12.79471 -12.66183 -12.51023 -12.37536 -12.20662 -12.03668 -11.97581 -11.69275 -11.60869 -11.49236 -10.95351 -10.43149 -10.19732 -9.43805 -8.29059 -6.01990 1.41934 1.50422 1.60594 2.00655 2.32416 2.84703 2.94188 3.08259 3.64674 3.86252 3.94320 4.13886 4.21545 4.31467 4.34535 4.42912 4.47966 4.52550 4.58429 4.72513 4.76888 4.79786 4.87391 4.94116 4.96146 4.99207 5.07823 5.10586 5.20175 5.26009 5.28255 5.34978 5.38736 5.49447 5.57551 6.03730 6.13346 6.44662 7.15378 7.63503 8.07330 8.73035 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.008124 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.930482 B = 3445.826796 C = 4070.003968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.114 3.886 4 N -0.444 5.444 5 C -0.351 4.351 6 H 0.101 0.899 7 C 0.006 3.994 8 N -0.889 5.889 9 Si 0.975 3.025 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.475 3.525 14 O -0.633 6.633 15 C -0.132 4.132 16 H 0.110 0.890 17 C -0.124 4.124 18 C 0.075 3.925 19 H 0.049 0.951 20 C -0.139 4.139 21 O -0.390 6.390 22 C 0.099 3.901 23 H 0.107 0.893 24 C -0.159 4.159 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.271 0.729 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -3.978 -2.181 6.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.010 4.010 4 N -0.161 5.161 5 C -0.479 4.479 6 H 0.119 0.881 7 C -0.198 4.198 8 N -0.526 5.526 9 Si 0.799 3.201 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.265 3.735 14 O -0.522 6.522 15 C -0.154 4.154 16 H 0.128 0.872 17 C -0.162 4.162 18 C 0.018 3.982 19 H 0.067 0.933 20 C -0.196 4.196 21 O -0.311 6.311 22 C 0.041 3.959 23 H 0.124 0.876 24 C -0.217 4.217 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.962 -4.027 -2.639 6.914 hybrid contribution -0.425 0.379 0.959 1.115 sum 4.538 -3.648 -1.680 6.060 Atomic orbital electron populations 1.21615 0.93853 1.02288 1.01653 1.21693 0.97063 0.96923 1.00357 1.21388 0.81877 0.96247 1.01452 1.43683 1.04892 1.62581 1.04949 1.19690 1.08926 1.30424 0.88827 0.88129 1.26138 0.96896 0.92989 1.03757 1.70053 1.32161 1.16911 1.33500 0.85208 0.77930 0.79397 0.77557 1.19682 1.20974 1.18362 1.20523 0.90021 0.79573 0.83352 1.90474 1.71166 1.57834 1.32704 1.22733 0.93018 0.98021 1.01608 0.87175 1.23132 1.01995 0.97990 0.93053 1.22992 0.98328 0.83660 0.93182 0.93315 1.21844 0.98457 1.02507 0.96806 1.88360 1.84958 1.38828 1.18937 1.22614 0.97791 0.92282 0.83177 0.87563 1.22168 0.98175 0.99763 1.01561 0.90967 0.92503 0.93122 0.94419 0.92452 0.89060 0.95373 0.91897 0.87618 0.91508 0.90856 0.91833 0.90005 0.94938 0.90823 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.91 71.98 0.71 -3.80 16 2 C -0.12 -5.02 6.25 30.59 0.19 -4.83 16 3 C 0.11 5.55 4.97 86.38 0.43 5.98 16 4 N -0.44 -21.98 2.39 -635.53 -1.52 -23.50 16 5 C -0.35 -16.90 7.46 84.04 0.63 -16.27 16 6 H 0.10 4.52 6.33 -2.91 -0.02 4.50 16 7 C 0.01 0.27 4.93 84.93 0.42 0.69 16 8 N -0.89 -45.99 11.40 21.66 0.25 -45.74 16 9 Si 0.98 37.74 29.61 68.60 2.03 39.77 16 10 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 12 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 13 C 0.48 22.97 4.57 87.66 0.40 23.37 16 14 O -0.63 -33.85 14.45 -3.08 -0.04 -33.90 16 15 C -0.13 -5.27 2.65 -10.28 -0.03 -5.30 16 16 H 0.11 4.34 6.62 -2.39 -0.02 4.33 16 17 C -0.12 -4.29 5.81 32.05 0.19 -4.11 16 18 C 0.08 2.62 3.69 31.26 0.12 2.73 16 19 H 0.05 2.01 7.06 -2.39 -0.02 2.00 16 20 C -0.14 -3.51 9.62 71.98 0.69 -2.82 16 21 O -0.39 -14.34 10.72 -148.98 -1.60 -15.94 16 22 C 0.10 3.55 4.09 31.06 0.13 3.68 16 23 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 24 C -0.16 -5.95 8.51 71.98 0.61 -5.33 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 4.69 5.41 -2.39 -0.01 4.67 16 31 H 0.03 1.45 7.48 -2.39 -0.02 1.44 16 32 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 33 H 0.11 2.95 8.06 -2.39 -0.02 2.93 16 34 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.03 1.39 7.10 -2.39 -0.02 1.37 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.07 2.80 6.35 -2.39 -0.02 2.78 16 Total: -1.00 -59.97 314.42 4.61 -55.36 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.00 Total: 29.96 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 4.49 Total: -6.02 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -1.27 Total: -69.24 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.64 Total: -49.84 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -59.97 4.61 -55.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.813 kcal (2) G-P(sol) polarization free energy of solvation -59.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds