Wall clock time and date at job start Mon Mar 30 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47643 * 2 1 4 4 C 1.53000 * 109.47025 * 240.00066 * 2 1 3 5 5 C 1.50707 * 109.47083 * 175.00259 * 4 2 1 6 6 H 1.07995 * 119.99782 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99802 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99456 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00417 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47180 * 270.00242 * 9 7 5 11 11 H 1.48500 * 109.47251 * 149.99967 * 9 7 5 12 12 H 1.48502 * 109.46954 * 29.99916 * 9 7 5 13 13 N 1.46901 * 109.46902 * 120.00297 * 2 1 3 14 14 C 1.46847 * 110.99968 * 37.78986 * 13 2 1 15 15 C 1.53042 * 109.52053 * 174.16168 * 14 13 2 16 16 H 1.09006 * 109.50269 * 299.23708 * 15 14 13 17 17 C 1.50699 * 109.53323 * 179.14082 * 15 14 13 18 18 O 1.20825 * 120.00133 * 0.17173 * 17 15 14 19 19 O 1.34235 * 120.00004 * 180.17828 * 17 15 14 20 20 C 1.53112 * 109.28041 * 59.17712 * 15 14 13 21 21 C 1.53124 * 109.16217 * 302.34459 * 20 15 14 22 22 C 1.46848 * 110.99869 * 273.57826 * 13 2 1 23 23 H 1.09004 * 109.46050 * 305.85434 * 22 13 2 24 24 C 1.52993 * 109.46340 * 65.83606 * 22 13 2 25 25 H 1.08994 * 109.47035 * 172.86089 * 1 2 3 26 26 H 1.08991 * 109.47061 * 292.86274 * 1 2 3 27 27 H 1.08999 * 109.46684 * 52.86617 * 1 2 3 28 28 H 1.08999 * 109.47586 * 55.00221 * 4 2 1 29 29 H 1.09004 * 109.47288 * 294.99814 * 4 2 1 30 30 H 0.97003 * 119.99673 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.46216 * 294.17020 * 14 13 2 32 32 H 1.09001 * 109.46128 * 54.14698 * 14 13 2 33 33 H 0.96696 * 116.99810 * 179.97438 * 19 17 15 34 34 H 1.08998 * 109.52791 * 182.43895 * 20 15 14 35 35 H 1.09001 * 109.57462 * 62.28284 * 20 15 14 36 36 H 1.08997 * 109.49968 * 297.71104 * 21 20 15 37 37 H 1.08997 * 109.53710 * 177.61328 * 21 20 15 38 38 H 1.08998 * 109.47303 * 48.56597 * 24 22 13 39 39 H 1.08996 * 109.47250 * 168.57413 * 24 22 13 40 40 H 1.09000 * 109.46943 * 288.57069 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2304 -1.1927 -2.3584 8 7 5.5410 -1.0995 -2.4140 9 14 3.3015 -2.1078 -3.6960 10 1 3.1708 -3.5380 -3.3181 11 1 4.0448 -2.0001 -4.9771 12 1 1.9504 -1.5127 -3.8561 13 7 2.0196 -0.6926 1.1994 14 6 1.1736 -1.8487 1.5217 15 6 1.7934 -2.6278 2.6841 16 1 2.7822 -2.9852 2.3965 17 6 0.9145 -3.8023 3.0290 18 8 -0.1024 -3.9992 2.4068 19 8 1.2613 -4.6298 4.0274 20 6 1.9168 -1.7069 3.9011 21 6 2.7623 -0.4870 3.5247 22 6 2.1143 0.2300 2.3380 23 1 2.7216 1.0909 2.0582 24 6 0.7126 0.7008 2.7306 25 1 -0.3633 -1.0196 -0.1277 26 1 -0.3633 0.3992 0.9469 27 1 -0.3633 0.6204 -0.8193 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 6.0254 -1.5056 -3.1498 31 1 0.1794 -1.5034 1.8052 32 1 1.0976 -2.4976 0.6492 33 1 0.6657 -5.3690 4.2118 34 1 2.3975 -2.2451 4.7180 35 1 0.9250 -1.3802 4.2140 36 1 3.7662 -0.8108 3.2503 37 1 2.8188 0.1935 4.3742 38 1 0.0498 -0.1605 2.8129 39 1 0.7580 1.2173 3.6893 40 1 0.3313 1.3812 1.9691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695717414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:30 Heat of formation + Delta-G solvation = -89.644777 kcal Electronic energy + Delta-G solvation = -20504.797355 eV Core-core repulsion = 17512.432526 eV Total energy + Delta-G solvation = -2992.364828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67844 -39.22656 -36.10701 -35.04140 -32.55227 -31.94100 -29.89210 -28.17687 -27.15375 -24.71072 -23.44637 -22.44746 -21.03094 -19.53453 -18.33735 -17.82899 -16.63126 -16.55125 -15.90535 -15.38543 -15.14695 -14.24568 -14.08803 -13.64359 -13.36424 -13.13251 -12.95802 -12.49139 -12.33026 -12.24163 -11.97050 -11.68962 -11.60309 -11.49940 -11.22375 -10.81475 -10.73600 -10.63888 -10.53237 -10.25509 -10.13579 -9.93443 -9.63433 -9.38959 -8.98446 -8.39235 -7.52993 -5.88423 -3.81752 2.25858 3.03983 3.39045 3.46280 3.49554 4.45779 4.57737 4.73595 4.91592 4.99018 5.20301 5.39931 5.46197 5.51983 5.55365 5.66022 5.69324 5.71572 5.77884 5.80152 5.92086 6.01482 6.03818 6.16287 6.21107 6.32064 6.38019 6.44943 6.49791 6.56830 6.63917 6.85270 7.17845 7.35908 7.74834 7.86118 7.92990 7.99113 8.74750 9.22703 9.75331 11.25591 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.007263 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.076902 B = 3854.114600 C = 4290.586483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.101 3.899 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.487 4.487 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.502 5.502 14 C 0.071 3.929 15 C -0.079 4.079 16 H 0.121 0.879 17 C 0.485 3.515 18 O -0.517 6.517 19 O -0.517 6.517 20 C -0.107 4.107 21 C -0.109 4.109 22 C 0.077 3.923 23 H 0.085 0.915 24 C -0.193 4.193 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.405 0.595 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -1.041 13.962 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.007 4.007 3 H 0.092 0.908 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.095 0.905 7 C -0.138 4.138 8 N -0.550 5.550 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.224 5.224 14 C -0.057 4.057 15 C -0.098 4.098 16 H 0.139 0.861 17 C 0.327 3.673 18 O -0.405 6.405 19 O -0.328 6.328 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.032 4.032 23 H 0.103 0.897 24 C -0.252 4.252 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.878 -0.981 13.477 16.169 hybrid contribution -1.621 -0.909 -0.575 1.946 sum -10.499 -1.890 12.903 16.742 Atomic orbital electron populations 1.22972 0.99223 1.01942 1.01825 1.21650 0.90267 0.97923 0.90837 0.90809 1.19646 0.97870 0.95103 0.91619 1.21033 0.89449 1.33685 1.08388 0.90458 1.24996 0.94651 0.96337 0.97826 1.69913 1.06385 1.46361 1.32320 0.86911 0.80428 0.80692 0.81971 1.20619 1.21699 1.19308 1.62094 1.50396 1.07087 1.02850 1.21895 0.94215 0.93257 0.96343 1.21130 1.00089 0.90749 0.97881 0.86084 1.23697 0.84726 0.82881 0.75959 1.90705 1.26440 1.72766 1.50574 1.84566 1.55589 1.40681 1.51991 1.21543 1.00934 0.96262 0.95753 1.21602 1.00023 0.95992 0.97051 1.21778 0.94804 0.95454 0.91161 0.89660 1.22815 0.99559 1.01470 1.01347 0.92711 0.92003 0.92825 0.96501 0.97061 0.93136 0.93749 0.89854 0.73712 0.90884 0.91944 0.90289 0.91470 0.92203 0.92867 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 7.63 37.16 0.28 -3.00 16 2 C 0.10 1.94 2.02 -67.71 -0.14 1.81 16 3 H 0.07 1.44 7.68 -51.93 -0.40 1.05 16 4 C 0.00 -0.11 3.62 -27.88 -0.10 -0.21 16 5 C -0.49 -13.71 9.39 -34.44 -0.32 -14.03 16 6 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 9 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.50 -8.96 4.21 -218.76 -0.92 -9.88 16 14 C 0.07 1.18 2.48 -3.83 -0.01 1.17 16 15 C -0.08 -1.13 2.79 -91.69 -0.26 -1.39 16 16 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 17 C 0.49 6.74 7.63 36.00 0.27 7.02 16 18 O -0.52 -8.65 16.74 -18.75 -0.31 -8.97 16 19 O -0.52 -5.51 13.35 -39.27 -0.52 -6.04 16 20 C -0.11 -1.27 4.91 -26.61 -0.13 -1.40 16 21 C -0.11 -1.36 5.58 -26.65 -0.15 -1.51 16 22 C 0.08 1.12 2.85 -67.72 -0.19 0.93 16 23 H 0.09 1.31 7.91 -51.93 -0.41 0.90 16 24 C -0.19 -2.42 6.82 37.15 0.25 -2.16 16 25 H 0.05 0.92 6.92 -51.93 -0.36 0.56 16 26 H 0.06 0.89 3.99 -51.93 -0.21 0.68 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 29 H 0.01 0.27 6.53 -51.93 -0.34 -0.07 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.04 0.71 4.61 -51.93 -0.24 0.47 16 32 H 0.08 1.59 6.88 -51.93 -0.36 1.23 16 33 H 0.40 2.53 9.10 45.56 0.41 2.95 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.71 6.83 -51.93 -0.35 0.36 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 4.57 -51.93 -0.24 0.54 16 39 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.06 0.81 6.06 -51.93 -0.31 0.50 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -32.65 301.07 -7.00 -39.65 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.30 Total: 1.78 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.58 Total: -11.08 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.15 Total: -37.43 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.84 Total: -15.01 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.65 -7.00 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695717414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.995 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds