Wall clock time and date at job start Mon Mar 30 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 110.64359 * 2 1 4 4 C 1.54934 * 110.72273 * 236.65754 * 2 1 3 5 5 N 1.48536 * 103.22480 * 204.22749 * 4 2 1 6 6 C 1.46906 * 110.99881 * 159.71823 * 5 4 2 7 7 C 1.52993 * 109.47378 * 52.60551 * 6 5 4 8 8 C 1.52996 * 109.47473 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47239 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99798 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00253 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99629 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47482 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47028 * 120.00411 * 13 11 9 16 16 H 1.48497 * 109.47236 * 240.00150 * 13 11 9 17 17 C 1.47904 * 105.82311 * 39.20666 * 5 4 2 18 18 C 1.53998 * 107.05495 * 334.67101 * 17 5 4 19 19 C 1.52991 * 110.31078 * 120.14072 * 18 17 5 20 20 C 1.50699 * 110.30649 * 242.31175 * 18 17 5 21 21 O 1.20829 * 120.00551 * 118.54475 * 20 18 17 22 22 O 1.34225 * 120.00029 * 298.54157 * 20 18 17 23 23 H 1.09006 * 109.47263 * 296.85081 * 1 2 3 24 24 H 1.09005 * 109.47122 * 56.84359 * 1 2 3 25 25 H 1.08993 * 109.47444 * 176.84467 * 1 2 3 26 26 H 1.09001 * 110.67291 * 85.79456 * 4 2 1 27 27 H 1.08998 * 110.66739 * 322.65911 * 4 2 1 28 28 H 1.09004 * 109.47040 * 172.60340 * 6 5 4 29 29 H 1.09000 * 109.47033 * 292.60292 * 6 5 4 30 30 H 1.09004 * 109.46862 * 299.99897 * 7 6 5 31 31 H 1.09004 * 109.46998 * 59.99419 * 7 6 5 32 32 H 1.08996 * 109.47261 * 300.00171 * 8 7 6 33 33 H 1.09000 * 109.46870 * 59.99782 * 8 7 6 34 34 H 0.97001 * 120.00663 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.91912 * 94.01756 * 17 5 4 36 36 H 1.08997 * 109.92108 * 215.12357 * 17 5 4 37 37 H 1.08996 * 109.47132 * 61.45507 * 19 18 17 38 38 H 1.09004 * 109.47251 * 181.45348 * 19 18 17 39 39 H 1.09002 * 109.47086 * 301.45250 * 19 18 17 40 40 H 0.96703 * 117.00416 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0782 -0.7965 -1.2106 5 7 3.4317 -1.2104 -0.7602 6 6 3.9211 -2.3524 -1.5441 7 6 3.8199 -2.0278 -3.0358 8 6 4.3301 -3.2168 -3.8523 9 6 4.2298 -2.8973 -5.3216 10 1 3.8414 -1.9415 -5.6411 11 6 4.6349 -3.8248 -6.2580 12 7 5.1083 -4.9884 -5.8690 13 14 4.5112 -3.4284 -8.0793 14 1 3.9505 -2.0643 -8.2521 15 1 5.8626 -3.4889 -8.6919 16 1 3.6227 -4.4168 -8.7418 17 6 3.2893 -1.5698 0.6675 18 6 2.0770 -0.7908 1.2106 19 6 1.0155 -1.7592 1.7358 20 6 2.5091 0.1552 2.3011 21 8 2.3514 1.3456 2.1660 22 8 3.0691 -0.3244 3.4227 23 1 -0.3634 0.4642 0.9169 24 1 -0.3634 0.5621 -0.8604 25 1 -0.3634 -1.0260 -0.0566 26 1 2.1444 -0.1592 -2.0924 27 1 1.4560 -1.6687 -1.4108 28 1 4.9611 -2.5517 -1.2855 29 1 3.3164 -3.2316 -1.3217 30 1 2.7799 -1.8285 -3.2945 31 1 4.4245 -1.1485 -3.2582 32 1 5.3701 -3.4158 -3.5936 33 1 3.7258 -4.0963 -3.6300 34 1 5.3930 -5.6410 -6.5277 35 1 3.1160 -2.6415 0.7651 36 1 4.1900 -1.2882 1.2129 37 1 1.4315 -2.3444 2.5558 38 1 0.1537 -1.1950 2.0927 39 1 0.7047 -2.4279 0.9331 40 1 3.3297 0.3210 4.0941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710160991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:04 Heat of formation + Delta-G solvation = -129.310233 kcal Electronic energy + Delta-G solvation = -19451.021884 eV Core-core repulsion = 16456.937033 eV Total energy + Delta-G solvation = -2994.084852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00721 -39.93391 -37.19496 -36.58896 -35.00549 -32.83903 -32.13874 -28.95782 -27.10023 -26.90340 -25.10629 -23.48374 -22.63007 -21.47374 -19.83643 -18.86911 -18.48802 -18.03113 -16.85264 -16.58854 -16.28847 -16.02783 -15.91778 -15.05672 -14.77187 -14.41597 -14.36870 -13.91082 -13.59430 -13.44581 -13.27257 -13.10050 -12.95209 -12.70446 -12.59591 -12.54751 -12.38738 -12.10015 -11.91490 -11.71951 -11.60346 -11.52203 -11.45094 -11.27669 -11.05834 -10.54937 -9.40742 -8.19700 -6.30340 1.14744 1.40383 1.41005 1.54313 2.03622 2.41479 2.95038 3.13710 3.25899 3.46585 3.86543 4.06137 4.19676 4.25158 4.26772 4.33757 4.51161 4.55734 4.66193 4.70351 4.72778 4.79276 4.83635 4.90001 4.95881 5.06710 5.12305 5.15377 5.22326 5.26509 5.39516 5.52475 5.57127 5.74249 5.86005 5.89757 6.01833 6.27603 6.86479 6.96878 7.38934 8.92402 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.040067 B = 0.003876 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.657090 B = 7222.546626 C = 7470.424406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.080 0.920 4 C 0.041 3.959 5 N -0.531 5.531 6 C 0.060 3.940 7 C -0.093 4.093 8 C 0.026 3.974 9 C -0.542 4.542 10 H 0.058 0.942 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.049 3.951 18 C -0.059 4.059 19 C -0.135 4.135 20 C 0.500 3.500 21 O -0.543 6.543 22 O -0.506 6.506 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.048 0.952 32 H -0.009 1.009 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 7.591 18.326 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.098 0.902 4 C -0.087 4.087 5 N -0.255 5.255 6 C -0.068 4.068 7 C -0.131 4.131 8 C -0.012 4.012 9 C -0.580 4.580 10 H 0.076 0.924 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.788 3.212 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.202 1.202 17 C -0.079 4.079 18 C -0.061 4.061 19 C -0.192 4.192 20 C 0.343 3.657 21 O -0.433 6.433 22 O -0.320 6.320 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -8.864 7.882 17.881 21.457 hybrid contribution 0.096 -0.269 -0.517 0.591 sum -8.768 7.612 17.363 20.888 Atomic orbital electron populations 1.21836 0.92198 1.03126 1.02537 1.22115 0.97411 0.99078 0.91164 0.90200 1.23320 0.88580 0.98793 0.97963 1.64828 1.24284 1.34111 1.02290 1.22229 1.00195 0.90919 0.93469 1.21451 1.00373 0.98461 0.92832 1.18969 0.94627 0.93467 0.94108 1.21712 1.41957 1.01371 0.92934 0.92393 1.25957 0.94740 0.94830 1.04202 1.70092 1.44067 1.07584 1.35603 0.85415 0.77935 0.78632 0.79175 1.18703 1.20421 1.20217 1.22950 0.96794 0.98986 0.89165 1.21435 0.97682 0.95183 0.91789 1.21973 0.96940 0.97937 1.02361 1.23256 0.72483 0.87719 0.82211 1.90693 1.53553 1.19103 1.79983 1.84497 1.72473 1.46304 1.28689 0.91873 0.91643 0.90784 0.90290 0.92634 0.91359 0.94468 0.92685 0.93332 0.99024 0.98788 0.92763 0.91120 0.90136 0.90291 0.90411 0.90271 0.71092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.03 71.98 0.58 -1.87 16 2 C -0.08 -1.79 2.92 -9.59 -0.03 -1.82 16 3 H 0.08 2.17 6.91 -2.38 -0.02 2.15 16 4 C 0.04 1.09 4.54 86.65 0.39 1.49 16 5 N -0.53 -15.80 5.40 -883.00 -4.76 -20.57 16 6 C 0.06 2.06 5.03 86.30 0.43 2.49 16 7 C -0.09 -3.90 4.81 30.59 0.15 -3.75 16 8 C 0.03 1.38 4.97 29.85 0.15 1.52 16 9 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 10 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 11 C 0.00 0.02 5.46 84.66 0.46 0.48 16 12 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 13 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 17 C 0.05 1.17 5.99 86.45 0.52 1.69 16 18 C -0.06 -1.22 0.84 -52.05 -0.04 -1.26 16 19 C -0.14 -2.03 7.00 71.98 0.50 -1.53 16 20 C 0.50 10.77 6.75 71.24 0.48 11.25 16 21 O -0.54 -15.04 16.20 21.96 0.36 -14.68 16 22 O -0.51 -7.69 13.30 -51.37 -0.68 -8.38 16 23 H 0.06 1.04 7.65 -2.38 -0.02 1.02 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.07 1.12 6.60 -2.39 -0.02 1.10 16 26 H 0.08 2.26 7.66 -2.39 -0.02 2.25 16 27 H 0.06 1.43 7.88 -2.39 -0.02 1.42 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.04 1.24 7.81 -2.39 -0.02 1.22 16 30 H 0.05 2.21 6.79 -2.38 -0.02 2.19 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.07 1.55 7.11 -2.39 -0.02 1.53 16 36 H 0.08 1.92 7.64 -2.39 -0.02 1.91 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.01 6.89 -2.38 -0.02 0.99 16 39 H 0.08 1.15 7.46 -2.39 -0.02 1.14 16 40 H 0.43 2.83 9.10 -74.06 -0.67 2.15 16 Total: -1.00 -69.63 318.92 1.39 -68.24 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.35 Total: 7.77 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.83 Total: -22.27 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -4.48 Total: -77.25 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.33 Total: -23.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.63 1.39 -68.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710160991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.067 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds