Wall clock time and date at job start Mon Mar 30 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 C 1.52994 * 109.47418 * 240.00155 * 2 1 3 5 5 C 1.50706 * 109.47054 * 65.59706 * 4 2 1 6 6 H 1.07995 * 119.99649 * 4.97753 * 5 4 2 7 7 C 1.37875 * 119.99776 * 184.97306 * 5 4 2 8 8 N 1.31512 * 120.00255 * 0.02562 * 7 5 4 9 9 Si 1.86812 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46723 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46987 * 120.00225 * 9 7 5 12 12 H 1.48500 * 109.46847 * 240.00408 * 9 7 5 13 13 N 1.46905 * 109.47535 * 120.00085 * 2 1 3 14 14 C 1.48553 * 111.00403 * 184.48304 * 13 2 1 15 15 C 1.54377 * 104.70074 * 159.09851 * 14 13 2 16 16 H 1.08997 * 110.32539 * 94.98352 * 15 14 13 17 17 C 1.53000 * 110.32369 * 217.19221 * 15 14 13 18 18 C 1.54262 * 105.05948 * 336.08856 * 15 14 13 19 19 C 1.52998 * 110.32379 * 118.89695 * 18 15 14 20 20 C 1.50707 * 110.32118 * 241.00216 * 18 15 14 21 21 O 1.20823 * 119.99716 * 113.12363 * 20 18 15 22 22 O 1.34227 * 119.99858 * 293.12226 * 20 18 15 23 23 C 1.48859 * 111.12926 * 299.80490 * 13 2 1 24 24 H 1.09005 * 109.47183 * 299.99370 * 1 2 3 25 25 H 1.08999 * 109.47419 * 59.99747 * 1 2 3 26 26 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47419 * 185.59873 * 4 2 1 28 28 H 1.09004 * 109.47344 * 305.60338 * 4 2 1 29 29 H 0.97007 * 119.99888 * 179.97438 * 8 7 5 30 30 H 1.09004 * 110.41203 * 40.25535 * 14 13 2 31 31 H 1.09004 * 110.40824 * 277.93904 * 14 13 2 32 32 H 1.09002 * 109.47231 * 63.18067 * 17 15 14 33 33 H 1.08996 * 109.47283 * 183.18491 * 17 15 14 34 34 H 1.09007 * 109.47070 * 303.17794 * 17 15 14 35 35 H 1.09004 * 109.47137 * 59.99685 * 19 18 15 36 36 H 1.08998 * 109.47116 * 180.02562 * 19 18 15 37 37 H 1.08997 * 109.46985 * 299.99502 * 19 18 15 38 38 H 0.96693 * 116.99934 * 180.02562 * 22 20 18 39 39 H 1.08996 * 110.39210 * 82.21480 * 23 13 2 40 40 H 1.08998 * 110.39253 * 319.78978 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6540 0.0648 -2.4758 6 1 1.1716 1.0254 -2.3718 7 6 1.9170 -0.4425 -3.7305 8 7 2.5041 -1.6125 -3.8571 9 14 1.4391 0.5321 -5.2510 10 1 0.7970 1.8065 -4.8403 11 1 2.6540 0.8252 -6.0530 12 1 0.4860 -0.2612 -6.0680 13 7 2.0197 -0.6925 1.1994 14 6 3.5007 -0.6192 1.2892 15 6 3.8163 -0.8777 2.7781 16 1 4.0412 -1.9318 2.9400 17 6 4.9899 -0.0070 3.2315 18 6 2.5316 -0.4816 3.5347 19 6 1.9623 -1.6885 4.2831 20 6 2.8164 0.6431 4.4966 21 8 2.3293 1.7333 4.3124 22 8 3.6109 0.4335 5.5579 23 6 1.5480 -0.0171 2.4393 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1254 -0.8088 -1.2005 28 1 1.5971 -1.7158 -1.3009 29 1 2.6887 -1.9696 -4.7399 30 1 3.8511 0.3694 0.9923 31 1 3.9579 -1.3869 0.6648 32 1 4.7139 1.0445 3.1526 33 1 5.2371 -0.2411 4.2669 34 1 5.8547 -0.2043 2.5980 35 1 2.6990 -2.0525 4.9993 36 1 1.0558 -1.3936 4.8118 37 1 1.7261 -2.4792 3.5711 38 1 3.7640 1.1849 6.1468 39 1 0.5331 -0.3327 2.6810 40 1 1.5928 1.0657 2.3224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710169065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:11 Heat of formation + Delta-G solvation = -102.678662 kcal Electronic energy + Delta-G solvation = -20109.630243 eV Core-core repulsion = 17116.700223 eV Total energy + Delta-G solvation = -2992.930020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.03570 -38.62850 -36.20238 -35.22035 -32.64420 -31.50894 -30.25307 -27.39630 -26.10673 -24.78146 -24.31252 -22.66270 -21.15508 -19.53241 -18.98166 -17.86798 -16.70390 -16.13498 -16.05431 -15.02352 -14.63279 -14.37177 -14.25670 -13.41888 -13.24961 -13.06954 -12.73520 -12.63659 -12.28416 -12.14621 -12.01673 -11.66267 -11.55240 -11.38423 -11.26956 -10.88858 -10.83679 -10.71594 -10.54830 -10.43026 -10.32305 -10.29081 -9.83737 -9.20391 -9.08305 -8.32896 -7.88795 -5.98391 -3.99817 2.16416 2.92914 3.31863 3.39592 3.43547 4.39993 4.42972 4.57160 4.59421 4.84496 5.14687 5.32590 5.36130 5.37687 5.41709 5.65023 5.75111 5.77713 5.89885 5.91916 6.02692 6.05416 6.09252 6.11515 6.19150 6.33443 6.36098 6.37408 6.45432 6.67489 6.89134 7.12919 7.39471 7.49977 7.75240 7.83257 7.88196 8.08331 8.45365 9.06763 9.63440 11.13012 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.004920 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.862494 B = 5690.223286 C = 5841.814773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 H 0.030 0.970 4 C 0.034 3.966 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.501 5.501 14 C 0.039 3.961 15 C -0.081 4.081 16 H 0.093 0.907 17 C -0.158 4.158 18 C -0.056 4.056 19 C -0.131 4.131 20 C 0.497 3.503 21 O -0.516 6.516 22 O -0.513 6.513 23 C 0.045 3.955 24 H 0.031 0.969 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 0.993 17.804 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 H 0.048 0.952 4 C -0.003 4.003 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.225 5.225 14 C -0.089 4.089 15 C -0.100 4.100 16 H 0.112 0.888 17 C -0.215 4.215 18 C -0.058 4.058 19 C -0.188 4.188 20 C 0.339 3.661 21 O -0.404 6.404 22 O -0.325 6.325 23 C -0.083 4.083 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.261 0.739 39 H 0.103 0.897 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.057 0.291 17.291 17.415 hybrid contribution 0.160 1.947 -0.533 2.025 sum 2.217 2.238 16.758 17.051 Atomic orbital electron populations 1.21726 0.95139 1.01623 1.00255 1.22058 0.95302 0.95385 0.90450 0.95237 1.19116 0.96010 0.96197 0.88988 1.21230 1.38939 1.04448 0.90869 0.92689 1.24974 0.95318 0.94967 0.98994 1.69981 1.42497 1.17683 1.23128 0.86583 0.78197 0.80217 0.83293 1.19785 1.21093 1.21018 1.65630 1.05697 1.49856 1.01355 1.23165 0.90167 1.01318 0.94235 1.22021 0.92042 1.01111 0.94812 0.88833 1.22117 0.98246 0.98908 1.02223 1.21403 0.98605 0.92773 0.93035 1.21810 1.00546 0.96246 1.00202 1.23336 0.73805 0.89351 0.79620 1.90708 1.49549 1.26729 1.73417 1.84605 1.63994 1.46447 1.37404 1.23180 0.97528 0.98362 0.89252 0.95021 0.91460 0.92599 0.96852 0.95305 0.93108 0.93738 0.89165 0.93273 0.90963 0.91606 0.91588 0.92491 0.89952 0.73851 0.89718 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.88 37.16 0.33 -2.22 16 2 C 0.08 1.60 1.86 -67.72 -0.13 1.48 16 3 H 0.03 0.66 7.98 -51.93 -0.41 0.25 16 4 C 0.03 0.88 4.50 -27.88 -0.13 0.76 16 5 C -0.52 -14.43 8.32 -34.44 -0.29 -14.72 16 6 H 0.05 1.51 7.29 -52.49 -0.38 1.13 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.50 -9.11 5.21 -221.77 -1.15 -10.26 16 14 C 0.04 0.66 5.07 -2.19 -0.01 0.65 16 15 C -0.08 -1.05 3.30 -89.24 -0.29 -1.35 16 16 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 17 C -0.16 -1.82 7.85 37.16 0.29 -1.53 16 18 C -0.06 -0.74 0.97 -154.28 -0.15 -0.89 16 19 C -0.13 -1.41 8.11 37.16 0.30 -1.11 16 20 C 0.50 6.37 5.09 36.01 0.18 6.55 16 21 O -0.52 -8.25 16.19 -18.75 -0.30 -8.55 16 22 O -0.51 -4.75 11.31 -39.25 -0.44 -5.19 16 23 C 0.04 0.71 4.28 -2.01 -0.01 0.70 16 24 H 0.03 0.54 6.96 -51.93 -0.36 0.18 16 25 H 0.07 1.39 7.10 -51.93 -0.37 1.02 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.01 0.36 6.80 -51.93 -0.35 0.00 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 0.79 7.62 -51.93 -0.40 0.39 16 31 H 0.09 1.59 7.55 -51.93 -0.39 1.20 16 32 H 0.05 0.63 7.13 -51.93 -0.37 0.26 16 33 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.40 2.08 9.10 45.56 0.41 2.49 16 39 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 40 H 0.06 1.04 6.71 -51.93 -0.35 0.70 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -31.80 313.58 -7.22 -39.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.77 Total: -0.29 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 0.01 Total: -10.11 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.42 Total: -36.23 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.75 Total: -13.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.80 -7.22 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710169065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.661 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds