Wall clock time and date at job start Mon Mar 30 2020 04:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47235 * 2 1 4 4 C 1.50705 * 109.46952 * 240.00299 * 2 1 3 5 5 H 1.07993 * 120.00019 * 274.99923 * 4 2 1 6 6 C 1.37884 * 119.99917 * 94.99913 * 4 2 1 7 7 N 1.31511 * 119.99972 * 184.91788 * 6 4 2 8 8 Si 1.86803 * 119.99947 * 4.91612 * 6 4 2 9 9 H 1.48500 * 109.46882 * 84.83379 * 8 6 4 10 10 H 1.48498 * 109.47005 * 204.83172 * 8 6 4 11 11 H 1.48498 * 109.47247 * 324.83527 * 8 6 4 12 12 N 1.46500 * 109.47511 * 120.00343 * 2 1 3 13 13 C 1.34778 * 120.00078 * 274.99837 * 12 2 1 14 14 O 1.21288 * 119.99415 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00264 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47263 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.47083 * 54.99560 * 16 15 13 18 18 C 1.53005 * 109.47000 * 294.99833 * 16 15 13 19 19 C 1.53000 * 109.46953 * 175.00120 * 16 15 13 20 20 H 1.09003 * 110.33339 * 307.24637 * 19 16 15 21 21 C 1.54480 * 110.37111 * 185.00079 * 19 16 15 22 22 C 1.54504 * 104.06420 * 217.18911 * 21 19 16 23 23 C 1.54481 * 104.06121 * 359.97438 * 22 21 19 24 24 O 1.44420 * 104.80285 * 23.97929 * 23 22 21 25 25 H 1.09007 * 109.46891 * 295.02869 * 1 2 3 26 26 H 1.08993 * 109.47530 * 55.03559 * 1 2 3 27 27 H 1.09004 * 109.46988 * 175.03622 * 1 2 3 28 28 H 0.96992 * 120.00128 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99819 * 95.00072 * 12 2 1 30 30 H 1.09001 * 109.47057 * 299.99977 * 15 13 12 31 31 H 1.09000 * 109.46808 * 60.00093 * 15 13 12 32 32 H 1.08997 * 109.46826 * 60.00293 * 18 16 15 33 33 H 1.09003 * 109.46797 * 179.97438 * 18 16 15 34 34 H 1.08993 * 109.47113 * 300.00338 * 18 16 15 35 35 H 1.09008 * 110.51153 * 335.83195 * 21 19 16 36 36 H 1.09000 * 110.51347 * 98.40228 * 21 19 16 37 37 H 1.09006 * 110.51309 * 118.64200 * 22 21 19 38 38 H 1.08999 * 110.51636 * 241.21586 * 22 21 19 39 39 H 1.09008 * 110.37077 * 142.81325 * 23 22 21 40 40 H 1.09001 * 110.37168 * 265.14735 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3582 7 7 2.7058 -0.6129 -3.4624 8 14 2.3135 1.8792 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1056 2.3993 -3.6927 11 1 1.1986 2.3276 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6491 -0.7289 3.5876 16 6 2.7001 0.2540 4.7590 17 1 1.7203 0.7129 4.8912 18 6 3.7371 1.3408 4.4680 19 6 3.0897 -0.4938 6.0356 20 1 2.4344 -1.3516 6.1871 21 6 3.0260 0.4533 7.2544 22 6 4.2201 0.0166 8.1321 23 6 4.8637 -1.1432 7.3402 24 8 4.4683 -0.9181 5.9695 25 1 -0.3633 0.4348 0.9312 26 1 -0.3634 0.5889 -0.8421 27 1 -0.3633 -1.0239 -0.0889 28 1 2.9368 -0.1046 -4.2555 29 1 2.2491 -1.6318 1.1524 30 1 1.9762 -1.5507 3.8325 31 1 3.6482 -1.1214 3.3984 32 1 3.4595 1.8736 3.5585 33 1 3.7731 2.0413 5.3023 34 1 4.7168 0.8820 4.3356 35 1 3.1429 1.4901 6.9389 36 1 2.0865 0.3222 7.7912 37 1 4.9275 0.8374 8.2506 38 1 3.8723 -0.3299 9.1053 39 1 5.9493 -1.1092 7.4326 40 1 4.4818 -2.1013 7.6929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:11 Heat of formation + Delta-G solvation = -105.606537 kcal Electronic energy + Delta-G solvation = -19464.371438 eV Core-core repulsion = 16471.314456 eV Total energy + Delta-G solvation = -2993.056982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93454 -38.83193 -35.22345 -34.12620 -32.32864 -32.17146 -30.11278 -28.31700 -27.10677 -25.27076 -23.83292 -21.78878 -20.86652 -19.78064 -19.39729 -17.31906 -16.54180 -16.23355 -15.59121 -15.50993 -15.18071 -14.78604 -14.02637 -13.93948 -13.34360 -13.31247 -12.96616 -12.50159 -12.29978 -12.10394 -11.85213 -11.60889 -11.58183 -11.39249 -11.19081 -11.01308 -10.76208 -10.73010 -10.62413 -10.52646 -10.43707 -9.85289 -9.80922 -9.16782 -8.96382 -8.66149 -7.99544 -6.20737 -4.24030 3.28260 3.36074 3.40087 3.43619 3.79274 4.04816 4.35218 4.45559 4.59932 4.75940 4.90602 5.06346 5.08102 5.20861 5.22047 5.38378 5.51970 5.55729 5.60805 5.66613 5.77562 5.80716 5.90226 5.98584 6.06365 6.28728 6.38548 6.47266 6.55544 6.71587 6.73211 6.78726 6.98865 7.23536 7.43632 7.62533 8.19076 8.64685 8.80590 9.08714 9.41935 10.91179 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.004322 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.612320 B = 6476.947539 C = 6522.709102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.560 6.560 15 C -0.137 4.137 16 C -0.065 4.065 17 H 0.087 0.913 18 C -0.148 4.148 19 C 0.078 3.922 20 H 0.067 0.933 21 C -0.154 4.154 22 C -0.155 4.155 23 C 0.044 3.956 24 O -0.364 6.364 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.393 0.607 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -0.682 21.334 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.287 3.713 14 O -0.440 6.440 15 C -0.177 4.177 16 C -0.084 4.084 17 H 0.105 0.895 18 C -0.205 4.205 19 C 0.020 3.980 20 H 0.085 0.915 21 C -0.192 4.192 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.283 6.283 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.226 0.774 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.479 0.149 20.932 20.985 hybrid contribution 0.031 0.376 0.083 0.386 sum 1.510 0.525 21.015 21.076 Atomic orbital electron populations 1.22211 0.98739 1.00457 0.99142 1.19099 0.90816 0.94343 0.82984 0.93294 1.21036 1.45111 0.95629 0.95020 0.90385 1.24948 0.93651 0.98635 0.95155 1.69882 1.44923 1.36173 1.01698 0.86881 0.79790 0.85879 0.77260 1.19862 1.21238 1.18517 1.46644 1.64939 1.13880 1.09972 1.20587 0.78199 0.87579 0.84975 1.90593 1.51776 1.16235 1.85407 1.21724 1.03285 0.99029 0.93695 1.20911 1.00666 0.95419 0.91396 0.89459 1.21875 0.98378 0.97782 1.02462 1.23114 0.84023 0.95650 0.95196 0.91502 1.23043 0.98549 1.01425 0.96135 1.22920 0.97988 0.99170 0.99182 1.23362 1.00315 0.97091 0.82587 1.89168 1.26677 1.87905 1.24554 0.95271 0.93038 0.93508 0.92282 0.77408 0.89720 0.88758 0.90398 0.93500 0.92544 0.89989 0.90756 0.90842 0.90882 0.89358 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.47 37.16 0.35 -2.92 16 2 C 0.23 5.58 2.22 -69.08 -0.15 5.42 16 3 H 0.05 1.29 4.73 -51.93 -0.25 1.05 16 4 C -0.53 -14.47 9.05 -34.44 -0.31 -14.78 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 8 Si 0.88 21.92 26.99 -169.99 -4.59 17.33 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.44 6.82 56.52 0.39 -6.06 16 12 N -0.71 -14.46 5.07 -54.93 -0.28 -14.74 16 13 C 0.50 9.62 7.51 -10.99 -0.08 9.54 16 14 O -0.56 -12.51 13.63 5.55 0.08 -12.44 16 15 C -0.14 -1.98 5.08 -27.89 -0.14 -2.12 16 16 C -0.07 -0.87 1.89 -90.62 -0.17 -1.05 16 17 H 0.09 1.21 7.95 -51.93 -0.41 0.80 16 18 C -0.15 -2.17 8.51 37.16 0.32 -1.85 16 19 C 0.08 0.86 2.95 -25.95 -0.08 0.78 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.15 -1.41 6.47 -25.17 -0.16 -1.57 16 22 C -0.15 -1.22 7.09 -25.16 -0.18 -1.39 16 23 C 0.04 0.39 7.63 37.93 0.29 0.68 16 24 O -0.36 -4.46 10.22 -35.23 -0.36 -4.82 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.39 7.14 8.59 -40.82 -0.35 6.79 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 32 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 33 H 0.05 0.60 6.39 -51.93 -0.33 0.27 16 34 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 35 H 0.08 0.80 6.11 -51.92 -0.32 0.48 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -31.51 317.39 -6.59 -38.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.58 Total: 4.60 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.42 Total: -7.08 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.50 Total: -40.49 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.28 Total: -17.26 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.51 -6.59 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.501 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds