Wall clock time and date at job start Mon Mar 30 2020 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00099 * 2 1 4 4 C 1.50700 * 109.47051 * 269.99524 * 3 2 1 5 5 H 1.08005 * 119.99878 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00214 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99789 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00407 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47176 * 90.00197 * 8 6 4 10 10 H 1.48496 * 109.47528 * 210.00307 * 8 6 4 11 11 H 1.48500 * 109.47179 * 330.00496 * 8 6 4 12 12 C 1.34774 * 119.99706 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99897 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00000 * 359.97438 * 12 2 1 15 15 C 1.53007 * 109.46977 * 179.97438 * 14 12 2 16 16 O 1.42897 * 109.47093 * 180.02562 * 15 14 12 17 17 C 1.42898 * 114.00017 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48190 * 93.24436 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67678 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 1.08995 * 109.47427 * 270.00363 * 1 2 3 23 23 H 1.09006 * 109.46961 * 30.00456 * 1 2 3 24 24 H 1.09000 * 109.47173 * 149.99848 * 1 2 3 25 25 H 1.09002 * 109.47300 * 29.99488 * 3 2 1 26 26 H 1.09005 * 109.47090 * 149.99798 * 3 2 1 27 27 H 0.97001 * 119.99869 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46861 * 60.00347 * 14 12 2 29 29 H 1.08991 * 109.47637 * 299.99939 * 14 12 2 30 30 H 1.08999 * 109.47003 * 60.00481 * 15 14 12 31 31 H 1.08999 * 109.47000 * 300.00675 * 15 14 12 32 32 H 1.09002 * 110.43427 * 330.70321 * 17 16 15 33 33 H 1.08996 * 110.75388 * 275.06031 * 18 17 16 34 34 H 1.08993 * 110.76071 * 38.44257 * 18 17 16 35 35 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 36 36 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 37 37 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 38 38 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 39 39 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 40 40 H 1.08996 * 110.07773 * 119.30576 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4370 3.4174 -3.4339 9 1 2.3066 4.2600 -3.9003 10 1 4.6970 4.2006 -3.4967 11 1 3.5543 2.2204 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3795 -3.6353 0.0014 16 8 1.6650 -4.8728 0.0019 17 6 2.5049 -6.0289 0.0012 18 6 2.7582 -6.5157 1.4496 19 6 3.1169 -8.0123 1.2456 20 6 2.1800 -8.4755 0.1109 21 6 1.7910 -7.2145 -0.6803 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5139 27 1 4.0303 4.4439 -0.8505 28 1 0.7583 -2.5306 -0.8881 29 1 0.7590 -2.5295 0.8919 30 1 3.0068 -3.5772 0.8910 31 1 3.0056 -3.5779 -0.8890 32 1 3.4488 -5.8132 -0.4994 33 1 3.5906 -5.9743 1.8991 34 1 1.8575 -6.4133 2.0547 35 1 2.9220 -8.5786 2.1563 36 1 4.1598 -8.1191 0.9468 37 1 1.2891 -8.9433 0.5299 38 1 2.6999 -9.1789 -0.5397 39 1 0.7111 -7.0702 -0.6453 40 1 2.1220 -7.3049 -1.7149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:46 Heat of formation + Delta-G solvation = -101.860129 kcal Electronic energy + Delta-G solvation = -18838.825669 eV Core-core repulsion = 15845.931143 eV Total energy + Delta-G solvation = -2992.894526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.28135 -38.68483 -36.12825 -34.80518 -32.66946 -31.27250 -28.90415 -28.02395 -27.36458 -25.77774 -23.88857 -21.94461 -20.89309 -20.45706 -18.31754 -17.22816 -16.55430 -15.96725 -15.87887 -15.69749 -15.14811 -14.62977 -14.25325 -14.20562 -13.54387 -13.20336 -12.92362 -12.57897 -12.22913 -12.15509 -11.85285 -11.81373 -11.44847 -11.33049 -11.31035 -11.09563 -10.98049 -10.86568 -10.74747 -10.59574 -10.54133 -10.15578 -9.62509 -9.41650 -8.93187 -8.43473 -7.64518 -6.04148 -4.08986 3.30272 3.36170 3.38454 3.45018 3.47287 4.18397 4.40008 4.44078 4.46402 4.72835 5.06273 5.16690 5.21767 5.26402 5.28453 5.31348 5.33534 5.42706 5.54229 5.62494 5.67247 5.70830 5.80981 5.86239 5.87807 5.93742 6.00782 6.08942 6.10585 6.11989 6.24261 7.05506 7.30849 7.44249 7.53982 7.92255 8.23613 8.40968 8.89825 9.08078 9.56109 11.03992 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.036712 B = 0.003580 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.511021 B = 7819.414112 C = 8015.308068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.507 3.493 13 O -0.546 6.546 14 C -0.137 4.137 15 C 0.079 3.921 16 O -0.384 6.384 17 C 0.084 3.916 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.123 4.123 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -19.985 2.843 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.334 5.334 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.294 3.706 13 O -0.424 6.424 14 C -0.177 4.177 15 C 0.002 3.998 16 O -0.304 6.304 17 C 0.026 3.974 18 C -0.185 4.185 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.161 4.161 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.387 -19.788 2.884 20.710 hybrid contribution 0.339 0.517 -0.978 1.157 sum -5.048 -19.271 1.906 20.012 Atomic orbital electron populations 1.21663 0.81302 1.02698 1.00508 1.48144 1.06288 1.07773 1.71162 1.19302 0.92581 0.78068 0.97526 1.21443 1.36512 1.06273 0.92313 0.92453 1.24945 0.95350 0.96390 0.97488 1.69936 1.38427 1.14330 1.30744 0.86483 0.77677 0.78585 0.84603 1.20624 1.21071 1.19886 1.20111 0.87963 0.85007 0.77554 1.90670 1.13922 1.87360 1.50456 1.21518 0.99368 0.92255 1.04599 1.22191 0.93714 0.82280 1.01594 1.87821 1.33997 1.13486 1.95071 1.22971 0.93531 0.85655 0.95247 1.23058 1.02114 0.95767 0.97608 1.22334 0.99490 0.95784 0.98568 1.22078 0.99550 0.97136 0.97209 1.22183 1.01782 0.93072 0.99021 0.93664 0.90752 0.92258 0.94945 0.93814 0.92708 0.88757 0.88920 0.92566 0.92446 0.91489 0.91325 0.90481 0.91493 0.91530 0.91621 0.91720 0.90518 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.93 16 2 N -0.60 -13.00 2.86 -182.95 -0.52 -13.52 16 3 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.72 7.67 -10.99 -0.08 10.64 16 13 O -0.55 -13.85 15.56 5.55 0.09 -13.77 16 14 C -0.14 -2.14 4.62 -27.88 -0.13 -2.26 16 15 C 0.08 1.20 5.08 37.16 0.19 1.39 16 16 O -0.38 -5.31 10.05 -35.23 -0.35 -5.67 16 17 C 0.08 0.96 3.33 -25.07 -0.08 0.87 16 18 C -0.15 -1.48 6.65 -24.55 -0.16 -1.65 16 19 C -0.12 -1.00 6.84 -24.88 -0.17 -1.17 16 20 C -0.12 -0.95 6.80 -25.62 -0.17 -1.12 16 21 C -0.12 -1.17 6.56 -25.62 -0.17 -1.33 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 24 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 29 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -32.90 329.25 -7.69 -40.59 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.96 Total: -3.42 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.62 Total: -0.06 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.65 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.27 Total: -19.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.90 -7.69 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.272 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds