Wall clock time and date at job start Mon Mar 30 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45194 * 109.46810 * 2 1 4 4 C 1.34240 * 116.99736 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99392 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00025 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46933 * 60.00322 * 6 4 3 8 8 C 1.52997 * 109.47224 * 300.00166 * 6 4 3 9 9 C 1.52997 * 109.47170 * 180.02562 * 6 4 3 10 10 N 1.46907 * 109.46905 * 297.32987 * 9 6 4 11 11 C 1.46900 * 110.99789 * 162.78623 * 10 9 6 12 12 C 1.50708 * 109.46980 * 196.88723 * 11 10 9 13 13 H 1.07997 * 119.99900 * 0.87911 * 12 11 10 14 14 C 1.37875 * 119.99816 * 180.87905 * 12 11 10 15 15 N 1.31507 * 120.00219 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99670 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47510 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47144 * 120.00195 * 16 14 12 19 19 H 1.48505 * 109.46723 * 240.00106 * 16 14 12 20 20 C 1.46900 * 110.99856 * 286.73748 * 10 9 6 21 21 C 1.52998 * 117.50031 * 144.69667 * 20 10 9 22 22 C 1.52999 * 117.50072 * 76.03345 * 20 10 9 23 23 H 1.08994 * 109.47343 * 60.00124 * 1 2 3 24 24 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47177 * 300.00122 * 1 2 3 26 26 H 1.08995 * 109.47243 * 239.99676 * 2 1 3 27 27 H 1.09004 * 109.46815 * 119.99958 * 2 1 3 28 28 H 1.09002 * 109.47404 * 55.20793 * 8 6 4 29 29 H 1.08994 * 109.47553 * 295.20344 * 8 6 4 30 30 H 1.09007 * 109.46846 * 175.20486 * 8 6 4 31 31 H 1.08994 * 109.47069 * 57.32674 * 9 6 4 32 32 H 1.09001 * 109.47470 * 177.32848 * 9 6 4 33 33 H 1.09007 * 109.47036 * 316.88154 * 11 10 9 34 34 H 1.08998 * 109.47742 * 76.88574 * 11 10 9 35 35 H 0.97005 * 120.00285 * 179.97438 * 15 14 12 36 36 H 1.09009 * 115.54977 * 290.35902 * 20 10 9 37 37 H 1.09002 * 117.49516 * 359.97438 * 21 20 10 38 38 H 1.08995 * 117.49952 * 145.01625 * 21 20 10 39 39 H 1.08994 * 117.49768 * 214.97946 * 22 20 10 40 40 H 1.09001 * 117.49359 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8896 8 6 3.4498 3.6836 -1.2499 9 6 5.4486 2.8573 0.0001 10 7 5.9043 2.1972 1.2309 11 6 7.2926 1.7359 1.0979 12 6 7.5915 0.7251 2.1750 13 1 6.8224 0.4422 2.8784 14 6 8.8468 0.1617 2.2625 15 7 9.7835 0.5067 1.4063 16 14 9.2171 -1.0916 3.5972 17 1 8.0037 -1.3050 4.4262 18 1 9.6219 -2.3761 2.9715 19 1 10.3203 -0.5896 4.4552 20 6 5.7535 3.0852 2.3913 21 6 5.3689 2.4442 3.7262 22 6 4.3441 3.2791 2.9542 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.3608 3.6668 -1.2944 29 1 3.8572 3.1994 -2.1373 30 1 3.7959 4.7165 -1.2083 31 1 5.7825 2.2840 -0.8646 32 1 5.8653 3.8634 -0.0482 33 1 7.4303 1.2756 0.1194 34 1 7.9688 2.5848 1.1985 35 1 10.6668 0.1106 1.4680 36 1 6.4289 3.9404 2.4198 37 1 5.2273 1.3635 3.7433 38 1 5.7908 2.8778 4.6329 39 1 4.0923 4.2616 3.3533 40 1 3.5287 2.7480 2.4632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043615583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:57 Heat of formation + Delta-G solvation = -58.878256 kcal Electronic energy + Delta-G solvation = -19994.392013 eV Core-core repulsion = 17003.361321 eV Total energy + Delta-G solvation = -2991.030692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16069 -37.90084 -36.13735 -34.24126 -33.26584 -31.86196 -31.28457 -27.22251 -25.01855 -24.07385 -22.30766 -22.12157 -21.77666 -19.95430 -19.40592 -17.32340 -16.48610 -16.26472 -15.81953 -14.97273 -14.66267 -14.28255 -14.21259 -13.60067 -13.36820 -13.23142 -12.76097 -12.36312 -12.27548 -12.02046 -11.84837 -11.51483 -11.46568 -11.40237 -11.17230 -11.00445 -10.71315 -10.61688 -10.42400 -10.25476 -9.96314 -9.73503 -9.48678 -9.18947 -9.06887 -8.31327 -7.19225 -5.90852 -3.89172 2.80870 2.99939 3.37535 3.44495 3.49956 4.46446 4.48841 4.72156 4.92121 4.97594 5.07578 5.11477 5.30696 5.33713 5.44669 5.47191 5.58876 5.67431 5.75699 5.77240 5.80448 5.87058 5.92992 6.04452 6.06986 6.15578 6.20478 6.35316 6.45302 6.60473 6.86028 6.86982 7.32717 7.41274 7.94481 8.20536 8.30878 8.34900 8.65843 9.18043 9.73300 11.20473 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.006194 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.144350 B = 4519.574318 C = 4863.319043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.371 6.371 4 C 0.458 3.542 5 O -0.464 6.464 6 C -0.085 4.085 7 H 0.113 0.887 8 C -0.143 4.143 9 C 0.072 3.928 10 N -0.501 5.501 11 C 0.201 3.799 12 C -0.488 4.488 13 H 0.065 0.935 14 C 0.051 3.949 15 N -0.904 5.904 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.287 1.287 20 C 0.031 3.969 21 C -0.148 4.148 22 C -0.198 4.198 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.030 0.970 34 H -0.009 1.009 35 H 0.258 0.742 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 5.695 -2.780 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.290 6.290 4 C 0.298 3.702 5 O -0.346 6.346 6 C -0.105 4.105 7 H 0.131 0.869 8 C -0.201 4.201 9 C -0.057 4.057 10 N -0.225 5.225 11 C 0.077 3.923 12 C -0.527 4.527 13 H 0.083 0.917 14 C -0.149 4.149 15 N -0.545 5.545 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.079 4.079 21 C -0.185 4.185 22 C -0.236 4.236 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.280 4.888 -2.753 17.219 hybrid contribution 0.950 -0.228 0.589 1.141 sum -15.330 4.660 -2.165 16.168 Atomic orbital electron populations 1.21780 0.93219 1.02551 1.03123 1.22885 0.94734 0.81148 1.02509 1.86473 1.25755 1.31557 1.85206 1.23600 0.79890 0.93022 0.73656 1.90771 1.59681 1.42330 1.41817 1.21388 0.97254 0.90201 1.01609 0.86899 1.21756 1.01723 1.00330 0.96323 1.21908 0.90819 0.97579 0.95351 1.61916 1.27102 1.34157 0.99363 1.19683 0.80231 0.94436 0.97983 1.21221 0.96076 1.21992 1.13421 0.91672 1.24963 0.96350 0.97199 0.96375 1.69967 1.03529 1.44248 1.36761 0.86494 0.78068 0.81317 0.81853 1.19777 1.21198 1.21296 1.22187 0.95461 0.96938 0.93292 1.22833 1.01308 0.99979 0.94395 1.23154 0.93468 1.01015 1.05917 0.91802 0.90648 0.91688 0.91668 0.91370 0.91545 0.92238 0.91377 0.90579 0.94401 0.95217 0.99091 0.93238 0.90919 0.88189 0.89712 0.89669 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.54 10.03 -39.29 -0.39 -5.93 16 4 C 0.46 7.96 6.74 36.00 0.24 8.20 16 5 O -0.46 -10.05 15.04 -18.75 -0.28 -10.33 16 6 C -0.09 -1.28 2.44 -91.78 -0.22 -1.51 16 7 H 0.11 1.61 4.85 -51.93 -0.25 1.36 16 8 C -0.14 -1.64 9.15 37.16 0.34 -1.30 16 9 C 0.07 1.32 3.95 -3.82 -0.02 1.31 16 10 N -0.50 -11.07 3.51 -228.07 -0.80 -11.87 16 11 C 0.20 5.41 4.74 -4.97 -0.02 5.39 16 12 C -0.49 -14.17 8.68 -34.44 -0.30 -14.47 16 13 H 0.07 1.89 6.10 -52.49 -0.32 1.57 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 15 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 16 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 C 0.03 0.60 4.53 -67.71 -0.31 0.29 16 21 C -0.15 -2.77 9.54 -26.69 -0.25 -3.02 16 22 C -0.20 -3.16 8.62 -26.69 -0.23 -3.39 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.07 0.69 8.00 -51.93 -0.42 0.27 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 32 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 33 H 0.03 0.87 7.69 -51.92 -0.40 0.47 16 34 H -0.01 -0.25 8.04 -51.93 -0.42 -0.66 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.10 2.10 7.09 -51.93 -0.37 1.73 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.46 6.15 -51.93 -0.32 1.14 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -32.91 326.31 -7.76 -40.67 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.66 Total: -0.95 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.26 Total: -7.06 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.06 Total: -38.83 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.68 Total: -16.26 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.91 -7.76 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043615583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.210 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds