Wall clock time and date at job start Mon Mar 30 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99835 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 N 1.46902 * 109.47027 * 179.72353 * 13 11 10 15 15 C 1.46848 * 110.99759 * 294.20938 * 14 13 11 16 16 C 1.53031 * 109.52183 * 174.16278 * 15 14 13 17 17 C 1.53125 * 109.28019 * 59.17805 * 16 15 14 18 18 C 1.53003 * 109.57523 * 182.41148 * 17 16 15 19 19 N 1.46900 * 109.46816 * 294.71427 * 18 17 16 20 20 C 1.53118 * 109.15784 * 302.34549 * 17 16 15 21 21 C 1.46843 * 110.99818 * 169.99758 * 14 13 11 22 22 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 24 24 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 25 25 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 26 26 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 27 27 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 28 28 H 1.09003 * 109.45649 * 294.17520 * 15 14 13 29 29 H 1.08995 * 109.46466 * 54.14585 * 15 14 13 30 30 H 1.09001 * 109.50516 * 299.23843 * 16 15 14 31 31 H 1.09000 * 109.50603 * 179.12077 * 16 15 14 32 32 H 1.08994 * 109.51952 * 62.24835 * 17 16 15 33 33 H 1.08997 * 109.47162 * 54.70917 * 18 17 16 34 34 H 1.08994 * 109.47168 * 174.71781 * 18 17 16 35 35 H 1.00905 * 111.00459 * 56.04538 * 19 18 17 36 36 H 1.00894 * 111.00125 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.50142 * 297.71135 * 20 17 16 38 38 H 1.08995 * 109.50409 * 177.59757 * 20 17 16 39 39 H 1.08996 * 109.46300 * 305.85393 * 21 14 13 40 40 H 1.09004 * 109.46280 * 65.83399 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 7 1.9984 -7.3010 0.0110 15 6 1.2470 -7.4701 1.2613 16 6 0.3828 -8.7299 1.1722 17 6 1.2830 -9.9442 0.9277 18 6 0.4210 -11.1994 0.7776 19 7 -0.2611 -11.4797 2.0481 20 6 2.0901 -9.7214 -0.3543 21 6 2.9048 -8.4328 -0.2210 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 3.1566 -3.4354 0.0002 26 1 3.3607 -5.9751 -0.8833 27 1 3.3586 -5.9671 0.8967 28 1 1.9441 -7.5659 2.0938 29 1 0.6078 -6.6018 1.4211 30 1 -0.3238 -8.6290 0.3484 31 1 -0.1630 -8.8637 2.1062 32 1 1.9638 -10.0683 1.7698 33 1 -0.3204 -11.0395 -0.0052 34 1 1.0544 -12.0454 0.5110 35 1 -0.8045 -10.6849 2.3499 36 1 -0.8369 -12.3050 1.9750 37 1 1.4103 -9.6361 -1.2020 38 1 2.7641 -10.5636 -0.5109 39 1 3.4696 -8.2638 -1.1377 40 1 3.5939 -8.5243 0.6186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044513197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:31 Heat of formation + Delta-G solvation = -47.783948 kcal Electronic energy + Delta-G solvation = -19045.312006 eV Core-core repulsion = 16087.055150 eV Total energy + Delta-G solvation = -2958.256856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64546 -38.23370 -35.56966 -34.10549 -32.39557 -32.14546 -30.77128 -28.44126 -26.71487 -24.66158 -23.19084 -22.38428 -21.35517 -19.69765 -19.60560 -17.06673 -16.41690 -15.84609 -15.62539 -15.31919 -14.97173 -14.82345 -14.34273 -14.26531 -13.88354 -13.70040 -13.22492 -12.88027 -12.55266 -12.26521 -12.08162 -11.95704 -11.78133 -11.33600 -11.18121 -10.97073 -10.87185 -10.75773 -10.40779 -10.33152 -10.20619 -9.38682 -8.95195 -8.92697 -8.72027 -8.14572 -7.82738 -6.16084 -4.22902 3.24353 3.30368 3.32740 3.42074 3.72522 4.27430 4.30098 4.45098 4.69168 4.71804 4.88871 5.18460 5.20060 5.27908 5.32682 5.36130 5.48248 5.53073 5.53181 5.59261 5.63347 5.75446 5.84975 5.93843 5.98857 6.13588 6.29997 6.39607 6.88729 7.07836 7.17755 7.22749 7.34936 7.47854 7.53736 7.69159 7.98331 8.66133 8.80553 9.15586 9.44013 10.94141 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.003474 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.439919 B = 8058.824040 C = 8406.962781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.539 6.539 13 C 0.035 3.965 14 N -0.519 5.519 15 C 0.052 3.948 16 C -0.108 4.108 17 C -0.089 4.089 18 C 0.067 3.933 19 N -0.854 5.854 20 C -0.109 4.109 21 C 0.057 3.943 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.389 0.611 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.338 0.662 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -19.581 1.280 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.417 6.417 13 C -0.096 4.096 14 N -0.244 5.244 15 C -0.076 4.076 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.064 4.064 19 N -0.384 5.384 20 C -0.147 4.147 21 C -0.071 4.071 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.221 0.779 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.570 -19.660 1.198 20.220 hybrid contribution 0.647 1.201 0.066 1.366 sum 5.217 -18.459 1.264 19.224 Atomic orbital electron populations 1.69978 1.06105 1.27273 1.48944 1.24957 0.94914 0.99445 0.94730 0.86419 0.79613 0.82674 0.78220 1.20458 1.21009 1.19767 1.21236 0.93252 0.90506 1.53140 0.91938 1.19070 0.88286 0.81917 0.97656 1.46458 1.11044 1.06124 1.72850 1.20315 0.89591 0.84074 0.77776 1.90621 1.16686 1.84522 1.49857 1.21995 0.95440 0.89708 1.02441 1.61557 1.26161 1.00241 1.36416 1.22244 0.96820 0.99877 0.88635 1.21597 0.98007 0.93284 1.01744 1.21265 0.97282 0.94038 0.98259 1.21817 0.96799 0.97709 0.90058 1.58764 1.38459 1.09311 1.31865 1.21574 0.98845 0.96250 0.98059 1.22085 0.93840 0.90745 1.00472 0.92461 0.95580 0.95650 0.77852 0.88428 0.92581 0.95773 0.88288 0.91129 0.91743 0.90826 0.95395 0.91325 0.84450 0.84968 0.90989 0.91629 0.90738 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 10 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 11 C 0.50 9.98 7.50 -10.98 -0.08 9.89 16 12 O -0.54 -12.92 14.33 5.55 0.08 -12.84 16 13 C 0.04 0.52 5.45 -4.97 -0.03 0.49 16 14 N -0.52 -7.52 4.40 -236.12 -1.04 -8.55 16 15 C 0.05 0.75 5.11 -3.84 -0.02 0.73 16 16 C -0.11 -1.31 5.10 -26.65 -0.14 -1.45 16 17 C -0.09 -0.91 2.46 -90.49 -0.22 -1.14 16 18 C 0.07 0.60 6.25 -3.82 -0.02 0.57 16 19 N -0.85 -7.29 9.62 -10.37 -0.10 -7.39 16 20 C -0.11 -1.08 5.38 -26.65 -0.14 -1.22 16 21 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 26 H 0.10 1.23 7.99 -51.93 -0.41 0.81 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 1.78 5.78 -51.93 -0.30 1.48 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.71 6.81 -51.93 -0.35 0.36 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.34 2.85 7.32 -39.29 -0.29 2.56 16 36 H 0.34 2.28 9.08 -39.29 -0.36 1.92 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -31.97 319.67 -8.64 -40.61 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.65 Total: 6.65 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.12 Total: 1.72 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.74 Total: -56.82 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.97 -8.64 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044513197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.178 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds