Wall clock time and date at job start Mon Mar 30 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99835 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 N 1.46902 * 109.47027 * 179.72353 * 13 11 10 15 15 C 1.46848 * 110.99759 * 294.20938 * 14 13 11 16 16 C 1.53031 * 109.52183 * 174.16278 * 15 14 13 17 17 C 1.53125 * 109.28019 * 59.17805 * 16 15 14 18 18 C 1.53003 * 109.57523 * 182.41148 * 17 16 15 19 19 N 1.46900 * 109.46816 * 294.71427 * 18 17 16 20 20 C 1.53118 * 109.15784 * 302.34549 * 17 16 15 21 21 C 1.46843 * 110.99818 * 169.99758 * 14 13 11 22 22 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 24 24 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 25 25 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 26 26 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 27 27 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 28 28 H 1.09003 * 109.45649 * 294.17520 * 15 14 13 29 29 H 1.08995 * 109.46466 * 54.14585 * 15 14 13 30 30 H 1.09001 * 109.50516 * 299.23843 * 16 15 14 31 31 H 1.09000 * 109.50603 * 179.12077 * 16 15 14 32 32 H 1.08994 * 109.51952 * 62.24835 * 17 16 15 33 33 H 1.08997 * 109.47162 * 54.70917 * 18 17 16 34 34 H 1.08994 * 109.47168 * 174.71781 * 18 17 16 35 35 H 1.00905 * 111.00459 * 56.04538 * 19 18 17 36 36 H 1.00894 * 111.00125 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.50142 * 297.71135 * 20 17 16 38 38 H 1.08995 * 109.50409 * 177.59757 * 20 17 16 39 39 H 1.08996 * 109.46300 * 305.85393 * 21 14 13 40 40 H 1.09004 * 109.46280 * 65.83399 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 7 1.9984 -7.3010 0.0110 15 6 1.2470 -7.4701 1.2613 16 6 0.3828 -8.7299 1.1722 17 6 1.2830 -9.9442 0.9277 18 6 0.4210 -11.1994 0.7776 19 7 -0.2611 -11.4797 2.0481 20 6 2.0901 -9.7214 -0.3543 21 6 2.9048 -8.4328 -0.2210 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 3.1566 -3.4354 0.0002 26 1 3.3607 -5.9751 -0.8833 27 1 3.3586 -5.9671 0.8967 28 1 1.9441 -7.5659 2.0938 29 1 0.6078 -6.6018 1.4211 30 1 -0.3238 -8.6290 0.3484 31 1 -0.1630 -8.8637 2.1062 32 1 1.9638 -10.0683 1.7698 33 1 -0.3204 -11.0395 -0.0052 34 1 1.0544 -12.0454 0.5110 35 1 -0.8045 -10.6849 2.3499 36 1 -0.8369 -12.3050 1.9750 37 1 1.4103 -9.6361 -1.2020 38 1 2.7641 -10.5636 -0.5109 39 1 3.4696 -8.2638 -1.1377 40 1 3.5939 -8.5243 0.6186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044513197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:30 Heat of formation + Delta-G solvation = -74.076273 kcal Electronic energy + Delta-G solvation = -19046.452126 eV Core-core repulsion = 16087.055150 eV Total energy + Delta-G solvation = -2959.396976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94322 -39.56490 -36.57050 -35.99473 -34.34520 -33.12297 -31.73753 -30.04179 -28.23366 -25.83543 -24.38601 -24.02499 -22.30721 -21.33193 -20.59246 -18.91085 -17.55895 -17.35921 -16.90776 -16.66035 -16.35778 -15.99128 -15.63342 -15.57407 -15.15700 -14.73010 -14.42466 -14.24124 -13.99710 -13.78866 -13.64969 -13.00016 -12.96979 -12.83911 -12.71494 -12.56097 -12.22905 -12.11795 -11.65060 -11.48752 -11.28212 -11.25814 -10.79940 -10.54696 -9.79363 -9.60467 -9.22302 -8.29350 -6.46069 1.42797 1.45375 1.56549 1.81376 2.28317 2.47910 3.05448 3.08556 3.61347 3.82873 3.84496 3.97440 4.10482 4.27495 4.32215 4.36496 4.48214 4.52771 4.62695 4.67000 4.77043 4.90896 4.94986 5.02850 5.11575 5.13348 5.22358 5.24171 5.24633 5.49756 5.51092 5.71540 5.85292 6.01446 6.21482 6.24579 6.57808 6.65480 6.96744 7.23758 7.55070 8.82930 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.003474 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.439919 B = 8058.824040 C = 8406.962781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.493 3.507 12 O -0.585 6.585 13 C 0.049 3.951 14 N -0.541 5.541 15 C 0.054 3.946 16 C -0.103 4.103 17 C -0.081 4.081 18 C 0.070 3.930 19 N -0.860 5.860 20 C -0.106 4.106 21 C 0.056 3.944 22 H 0.268 0.732 23 H -0.015 1.015 24 H -0.015 1.015 25 H 0.408 0.592 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.341 0.659 36 H 0.349 0.651 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -20.524 1.198 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.465 6.465 13 C -0.082 4.082 14 N -0.266 5.266 15 C -0.074 4.074 16 C -0.141 4.141 17 C -0.100 4.100 18 C -0.060 4.060 19 N -0.391 5.391 20 C -0.145 4.145 21 C -0.071 4.071 22 H 0.077 0.923 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.243 0.757 26 H 0.146 0.854 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.525 -20.650 1.114 22.006 hybrid contribution -0.322 1.423 0.100 1.462 sum 7.202 -19.227 1.214 20.568 Atomic orbital electron populations 1.70145 1.08318 1.28546 1.50036 1.26089 0.95780 1.03971 0.93869 0.85148 0.78493 0.76906 0.78612 1.19578 1.20990 1.17848 1.21633 0.94326 0.90593 1.52800 0.89769 1.18483 0.88679 0.84390 0.93841 1.46193 1.11130 1.05518 1.73289 1.21405 0.90059 0.84784 0.75778 1.90609 1.19292 1.85192 1.51423 1.21933 0.93830 0.87385 1.05025 1.61522 1.27546 1.01215 1.36340 1.22111 0.96781 0.99115 0.89366 1.21535 0.97774 0.93447 1.01321 1.21192 0.96957 0.93389 0.98501 1.21774 0.96735 0.97418 0.90104 1.58781 1.38859 1.09820 1.31643 1.21588 0.98955 0.96674 0.97234 1.22211 0.93595 0.89622 1.01679 0.92271 0.99745 0.99705 0.75660 0.85372 0.89989 0.94797 0.92588 0.93103 0.91134 0.90902 0.95785 0.90086 0.84539 0.83814 0.92072 0.88985 0.89150 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.56 -30.46 9.28 25.60 0.24 -30.23 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.99 5.43 85.63 0.46 15.46 16 10 N -0.71 -30.28 5.55 -466.79 -2.59 -32.87 16 11 C 0.49 20.03 7.50 87.66 0.66 20.68 16 12 O -0.58 -29.53 14.33 -3.04 -0.04 -29.57 16 13 C 0.05 1.35 5.45 85.56 0.47 1.81 16 14 N -0.54 -14.99 4.40 -900.94 -3.96 -18.95 16 15 C 0.05 1.58 5.11 86.32 0.44 2.02 16 16 C -0.10 -2.49 5.10 30.65 0.16 -2.34 16 17 C -0.08 -1.52 2.46 -10.71 -0.03 -1.54 16 18 C 0.07 1.13 6.25 86.30 0.54 1.67 16 19 N -0.86 -13.44 9.62 -186.72 -1.80 -15.23 16 20 C -0.11 -1.83 5.38 30.65 0.16 -1.66 16 21 C 0.06 1.07 5.46 86.33 0.47 1.55 16 22 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 23 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 24 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 25 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16 26 H 0.13 2.77 7.99 -2.38 -0.02 2.76 16 27 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 2.12 5.78 -2.39 -0.01 2.11 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.57 6.81 -2.39 -0.02 1.56 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.34 5.41 7.32 -89.69 -0.66 4.75 16 36 H 0.35 4.18 9.08 -89.70 -0.81 3.36 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 40 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -72.75 319.67 -3.24 -75.99 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -1.20 Total: 24.63 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.03 Total: 8.01 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -8.06 Total: -123.57 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.04 Total: -29.57 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.75 -3.24 -75.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044513197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -72.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds