Wall clock time and date at job start Mon Mar 30 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47179 * 180.02562 * 13 11 10 15 15 C 1.46847 * 110.99921 * 66.04302 * 14 13 11 16 16 C 1.53043 * 109.52240 * 174.16067 * 15 14 13 17 17 C 1.53120 * 109.27861 * 59.17863 * 16 15 14 18 18 C 1.53117 * 109.16133 * 302.34862 * 17 16 15 19 19 H 1.08998 * 109.50693 * 297.71183 * 18 17 16 20 20 C 1.53002 * 109.50221 * 177.59297 * 18 17 16 21 21 N 1.46903 * 109.46841 * 65.00233 * 20 18 17 22 22 C 1.46849 * 110.99963 * 301.83395 * 14 13 11 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 27 27 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 28 28 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 29 29 H 1.09001 * 109.46671 * 294.17382 * 15 14 13 30 30 H 1.08997 * 109.46110 * 54.14794 * 15 14 13 31 31 H 1.08998 * 109.50607 * 179.12330 * 16 15 14 32 32 H 1.09006 * 109.50159 * 299.24341 * 16 15 14 33 33 H 1.09001 * 109.52085 * 62.25328 * 17 16 15 34 34 H 1.09001 * 109.52645 * 182.44079 * 17 16 15 35 35 H 1.09001 * 109.46694 * 184.99833 * 20 18 17 36 36 H 1.08999 * 109.47314 * 304.99716 * 20 18 17 37 37 H 1.00902 * 110.99735 * 180.02562 * 21 20 18 38 38 H 1.00905 * 110.99749 * 303.94615 * 21 20 18 39 39 H 1.09003 * 109.46154 * 305.85831 * 22 14 13 40 40 H 1.08999 * 109.45931 * 65.82818 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 7 1.9987 -7.3010 0.0015 15 6 1.2540 -7.4785 -1.2516 16 6 0.6217 -8.8720 -1.2777 17 6 -0.3178 -9.0233 -0.0780 18 6 0.4722 -8.7858 1.2120 19 1 1.2531 -9.5406 1.3048 20 6 -0.4717 -8.8760 2.4128 21 7 -0.9937 -10.2446 2.5236 22 6 1.1089 -7.3950 1.1659 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 3.1568 -3.4353 0.0009 27 1 3.3599 -5.9714 -0.8883 28 1 3.3598 -5.9706 0.8916 29 1 0.4711 -6.7231 -1.3191 30 1 1.9345 -7.3727 -2.0965 31 1 0.0561 -8.9978 -2.2009 32 1 1.4050 -9.6281 -1.2241 33 1 -1.1232 -8.2926 -0.1517 34 1 -0.7372 -10.0293 -0.0684 35 1 0.0719 -8.6197 3.3222 36 1 -1.3002 -8.1809 2.2768 37 1 -1.6206 -10.3300 3.3097 38 1 -1.4465 -10.5293 1.6679 39 1 1.6839 -7.2283 2.0768 40 1 0.3267 -6.6400 1.0870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044529200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:17 Heat of formation + Delta-G solvation = -50.746861 kcal Electronic energy + Delta-G solvation = -19497.575666 eV Core-core repulsion = 16539.190328 eV Total energy + Delta-G solvation = -2958.385337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05667 -38.09262 -35.35283 -34.39361 -32.72766 -32.42371 -30.54583 -28.12840 -26.03157 -24.94441 -23.28636 -22.44758 -21.28746 -19.85520 -19.61436 -17.51181 -16.35059 -16.22206 -15.61038 -15.44455 -14.95228 -14.61571 -14.28711 -14.02952 -13.81083 -13.74658 -13.43268 -12.78700 -12.66532 -12.30530 -12.14253 -11.99004 -11.69076 -11.46002 -11.08147 -10.86396 -10.69817 -10.63016 -10.31529 -10.21810 -10.18779 -9.89880 -8.86380 -8.85683 -8.72882 -8.07090 -7.85018 -6.56726 -4.30766 3.14052 3.34180 3.37518 3.53149 3.92730 4.01561 4.41601 4.50243 4.75410 4.82589 4.97110 5.22065 5.27255 5.32465 5.37653 5.44835 5.47348 5.59247 5.62813 5.66105 5.79730 5.93025 5.96074 6.04244 6.12865 6.25430 6.31992 6.52710 6.89836 6.95351 7.08675 7.14360 7.16724 7.24823 7.26284 7.59806 8.20923 8.38464 8.65632 8.88104 9.43257 10.83188 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.004059 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.558617 B = 6896.519267 C = 7185.697158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.078 2.922 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.624 4.624 8 H 0.058 0.942 9 C 0.239 3.761 10 N -0.705 5.705 11 C 0.466 3.534 12 O -0.556 6.556 13 C 0.032 3.968 14 N -0.512 5.512 15 C 0.040 3.960 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.078 4.078 19 H 0.080 0.920 20 C 0.065 3.935 21 N -0.851 5.851 22 C 0.037 3.963 23 H 0.272 0.728 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.393 0.607 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.339 0.661 38 H 0.339 0.661 39 H 0.064 0.936 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -17.127 0.907 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.662 4.662 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.353 5.353 11 C 0.250 3.750 12 O -0.437 6.437 13 C -0.099 4.099 14 N -0.235 5.235 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.098 4.098 19 H 0.099 0.901 20 C -0.066 4.066 21 N -0.381 5.381 22 C -0.091 4.091 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.226 0.774 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.935 -16.208 1.038 16.504 hybrid contribution -0.811 -0.384 -0.177 0.915 sum 2.124 -16.591 0.861 16.749 Atomic orbital electron populations 1.70740 1.06898 1.31006 1.45011 1.25897 0.96412 1.02809 0.93222 0.83409 0.74534 0.74567 0.76915 1.21231 1.21316 1.20758 1.22096 0.94596 0.91517 1.58005 0.92419 1.19153 0.89092 0.83765 0.96272 1.46449 1.11080 1.06161 1.71636 1.21929 0.90415 0.85317 0.77308 1.90539 1.17232 1.84406 1.51482 1.22285 0.96246 0.86791 1.04624 1.62367 1.28713 1.29150 1.03240 1.22262 0.97752 0.97498 0.91299 1.21505 0.98549 0.97100 0.97673 1.21622 0.98171 1.00862 0.94723 1.21130 0.97401 0.97669 0.93552 0.90120 1.21782 0.97343 0.88686 0.98759 1.58778 1.45209 1.25079 1.08998 1.22421 0.96946 0.97247 0.92480 0.91756 0.96691 0.96688 0.77369 0.88219 0.88140 0.91916 0.91565 0.91873 0.91538 0.92261 0.92173 0.91058 0.95377 0.84951 0.84838 0.91729 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.65 55.43 0.76 -26.49 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.34 29.90 -169.99 -5.08 19.25 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.62 -17.07 9.28 -34.44 -0.32 -17.39 16 8 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 9 C 0.24 6.25 4.74 -5.19 -0.02 6.22 16 10 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16 11 C 0.47 8.87 7.25 -10.98 -0.08 8.79 16 12 O -0.56 -12.37 11.62 5.56 0.06 -12.31 16 13 C 0.03 0.46 5.86 -4.97 -0.03 0.43 16 14 N -0.51 -7.29 4.86 -236.11 -1.15 -8.44 16 15 C 0.04 0.56 5.09 -3.83 -0.02 0.54 16 16 C -0.11 -1.30 6.09 -26.65 -0.16 -1.47 16 17 C -0.12 -1.36 5.00 -26.61 -0.13 -1.49 16 18 C -0.08 -0.96 2.56 -90.54 -0.23 -1.19 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C 0.07 0.74 6.25 -3.82 -0.02 0.71 16 21 N -0.85 -8.15 9.62 -10.37 -0.10 -8.25 16 22 C 0.04 0.54 4.26 -3.83 -0.02 0.52 16 23 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 24 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 25 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 26 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 27 H 0.10 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.09 6.00 -51.93 -0.31 0.78 16 30 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.60 6.80 -51.93 -0.35 0.25 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.34 2.67 9.08 -39.29 -0.36 2.32 16 38 H 0.34 2.94 7.30 -39.29 -0.29 2.65 16 39 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 40 H 0.08 1.42 5.36 -51.93 -0.28 1.15 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -31.55 313.29 -8.73 -40.28 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.47 Total: 9.95 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.14 Total: -3.78 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.83 Total: -58.11 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.06 Total: -12.31 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.55 -8.73 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044529200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.465 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds