Wall clock time and date at job start Mon Mar 30 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48498 * 109.46804 * 149.99708 * 3 2 1 7 7 C 1.37880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00453 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 N 1.46903 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.46849 * 111.00057 * 66.04731 * 14 13 11 16 16 C 1.53029 * 109.52391 * 185.84066 * 15 14 13 17 17 C 1.53121 * 109.27994 * 300.82167 * 16 15 14 18 18 C 1.53115 * 109.16241 * 57.64933 * 17 16 15 19 19 H 1.09010 * 109.49879 * 62.29346 * 18 17 16 20 20 C 1.52992 * 109.50343 * 182.36789 * 18 17 16 21 21 N 1.46907 * 109.47471 * 295.00150 * 20 18 17 22 22 C 1.46850 * 111.00062 * 190.25471 * 14 13 11 23 23 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46606 * 60.00483 * 9 7 2 25 25 H 1.09006 * 109.47204 * 300.00940 * 9 7 2 26 26 H 0.97000 * 120.00740 * 359.72841 * 10 9 7 27 27 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 28 28 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 29 29 H 1.09008 * 109.45802 * 305.85434 * 15 14 13 30 30 H 1.08999 * 109.46121 * 65.82013 * 15 14 13 31 31 H 1.09000 * 109.50473 * 60.75953 * 16 15 14 32 32 H 1.08999 * 109.50837 * 180.83850 * 16 15 14 33 33 H 1.09002 * 109.52798 * 177.56154 * 17 16 15 34 34 H 1.09004 * 109.51612 * 297.68649 * 17 16 15 35 35 H 1.09004 * 109.47356 * 55.00576 * 20 18 17 36 36 H 1.09005 * 109.47251 * 175.00318 * 20 18 17 37 37 H 1.00903 * 110.99989 * 179.97438 * 21 20 18 38 38 H 1.00899 * 110.99731 * 303.95842 * 21 20 18 39 39 H 1.08995 * 109.46329 * 294.17824 * 22 14 13 40 40 H 1.09003 * 109.45697 * 54.14573 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1131 -1.8995 -0.0049 13 6 5.8274 -4.2422 0.0065 14 7 7.2964 -4.2421 0.0059 15 6 7.8232 -3.6798 1.2559 16 6 9.3460 -3.5609 1.1616 17 6 9.9466 -4.9468 0.9105 18 6 9.3454 -5.5305 -0.3710 19 1 9.6083 -4.8965 -1.2179 20 6 9.8960 -6.9398 -0.5977 21 7 11.3422 -6.8666 -0.8456 22 6 7.8227 -5.5923 -0.2322 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6796 0.8896 25 1 3.8746 -0.6806 -0.8905 26 1 3.3697 -3.3125 0.0045 27 1 5.4649 -4.7517 0.8992 28 1 5.4634 -4.7602 -0.8808 29 1 7.3913 -2.6925 1.4204 30 1 7.5607 -4.3339 2.0874 31 1 9.6088 -2.8960 0.3389 32 1 9.7381 -3.1574 2.0951 33 1 11.0276 -4.8608 0.7995 34 1 9.7178 -5.6008 1.7520 35 1 9.7093 -7.5495 0.2864 36 1 9.4020 -7.3887 -1.4594 37 1 11.7299 -7.7856 -0.9980 38 1 11.5454 -6.2547 -1.6216 39 1 7.5602 -6.2374 0.6062 40 1 7.3904 -5.9941 -1.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044529201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:20 Heat of formation + Delta-G solvation = -44.110761 kcal Electronic energy + Delta-G solvation = -19106.228990 eV Core-core repulsion = 16148.131416 eV Total energy + Delta-G solvation = -2958.097574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.72613 -38.33020 -35.43961 -34.20800 -32.83927 -32.30905 -30.66502 -28.72719 -26.66118 -25.02091 -23.18057 -22.08014 -21.29517 -19.79351 -19.77473 -17.26756 -16.36987 -16.08007 -15.52650 -15.33276 -14.97278 -14.89811 -14.66642 -14.34026 -14.00465 -13.68105 -13.18880 -12.92793 -12.65248 -12.46243 -12.34208 -12.27054 -11.79861 -11.52213 -11.08495 -10.99847 -10.76778 -10.66471 -10.39812 -10.36481 -9.96456 -9.48990 -9.09628 -8.98454 -8.77019 -8.23977 -8.07788 -6.21255 -4.23423 3.25538 3.29097 3.33944 3.42786 3.57161 4.21901 4.31465 4.34279 4.65751 4.77708 4.84883 5.14080 5.16289 5.21048 5.29966 5.35399 5.39223 5.45678 5.49344 5.51542 5.56432 5.74454 5.80336 5.99033 6.07947 6.12076 6.34447 6.43116 6.77631 6.80724 7.05118 7.08642 7.09342 7.17457 7.26514 7.40975 8.15786 8.53778 8.76268 8.98525 9.39222 10.90736 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.050732 B = 0.003706 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.792550 B = 7552.974193 C = 7862.842030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.708 5.708 11 C 0.501 3.499 12 O -0.540 6.540 13 C 0.036 3.964 14 N -0.518 5.518 15 C 0.050 3.950 16 C -0.116 4.116 17 C -0.105 4.105 18 C -0.082 4.082 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.849 5.849 22 C 0.062 3.938 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.395 0.605 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.340 0.660 38 H 0.341 0.659 39 H 0.032 0.968 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.217 -14.410 -0.056 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.358 5.358 11 C 0.285 3.715 12 O -0.418 6.418 13 C -0.095 4.095 14 N -0.243 5.243 15 C -0.078 4.078 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.101 4.101 19 H 0.096 0.904 20 C -0.065 4.065 21 N -0.379 5.379 22 C -0.067 4.067 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.229 0.771 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.050 0.950 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.786 -12.996 0.301 22.845 hybrid contribution -0.676 -0.474 -0.339 0.893 sum 18.110 -13.470 -0.038 22.570 Atomic orbital electron populations 1.69878 1.06228 1.27429 1.49522 1.24803 0.94790 0.99201 0.93866 0.86806 0.80557 0.83192 0.79069 1.19837 1.20934 1.18497 1.21104 0.88584 0.95194 1.53240 0.90294 1.19461 0.95135 0.78703 0.96709 1.46177 1.05666 1.10979 1.72976 1.20363 0.83024 0.90658 0.77473 1.90620 1.55251 1.46042 1.49891 1.21970 0.89034 0.95815 1.02673 1.61510 1.05411 1.20812 1.36539 1.22288 0.95705 1.01248 0.88513 1.21571 0.94485 0.97359 1.01925 1.21521 1.00513 0.95961 0.96276 1.21161 0.93730 0.95610 0.99624 0.90388 1.21792 0.87831 0.96890 0.99946 1.58664 1.13116 1.16455 1.49646 1.22080 0.94936 0.89245 1.00436 0.92269 0.95828 0.96168 0.77145 0.92353 0.88255 0.88525 0.95802 0.91059 0.91805 0.90972 0.92840 0.91182 0.95538 0.84834 0.84668 0.94982 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.49 4.50 -5.20 -0.02 5.47 16 10 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 11 C 0.50 9.55 7.50 -10.98 -0.08 9.46 16 12 O -0.54 -12.27 14.35 5.56 0.08 -12.19 16 13 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 14 N -0.52 -7.24 4.39 -236.12 -1.04 -8.28 16 15 C 0.05 0.70 5.11 -3.84 -0.02 0.69 16 16 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 17 C -0.11 -1.09 5.14 -26.61 -0.14 -1.23 16 18 C -0.08 -0.80 2.49 -90.55 -0.23 -1.03 16 19 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 20 C 0.07 0.52 6.18 -3.82 -0.02 0.50 16 21 N -0.85 -6.03 9.13 -10.37 -0.09 -6.12 16 22 C 0.06 0.66 4.74 -3.84 -0.02 0.64 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 25 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 26 H 0.40 6.98 8.32 -40.82 -0.34 6.65 16 27 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 29 H 0.10 1.67 5.80 -51.92 -0.30 1.37 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.34 1.83 9.08 -39.29 -0.36 1.47 16 38 H 0.34 2.20 8.99 -39.29 -0.35 1.85 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -32.00 318.30 -8.38 -40.39 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.74 Total: 4.79 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.16 Total: 0.22 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.70 Total: -54.91 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.00 -8.38 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044529201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.724 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds