Wall clock time and date at job start Mon Mar 30 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48498 * 109.46804 * 149.99708 * 3 2 1 7 7 C 1.37880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00453 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 N 1.46903 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.46849 * 111.00057 * 66.04731 * 14 13 11 16 16 C 1.53029 * 109.52391 * 185.84066 * 15 14 13 17 17 C 1.53121 * 109.27994 * 300.82167 * 16 15 14 18 18 C 1.53115 * 109.16241 * 57.64933 * 17 16 15 19 19 H 1.09010 * 109.49879 * 62.29346 * 18 17 16 20 20 C 1.52992 * 109.50343 * 182.36789 * 18 17 16 21 21 N 1.46907 * 109.47471 * 295.00150 * 20 18 17 22 22 C 1.46850 * 111.00062 * 190.25471 * 14 13 11 23 23 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46606 * 60.00483 * 9 7 2 25 25 H 1.09006 * 109.47204 * 300.00940 * 9 7 2 26 26 H 0.97000 * 120.00740 * 359.72841 * 10 9 7 27 27 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 28 28 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 29 29 H 1.09008 * 109.45802 * 305.85434 * 15 14 13 30 30 H 1.08999 * 109.46121 * 65.82013 * 15 14 13 31 31 H 1.09000 * 109.50473 * 60.75953 * 16 15 14 32 32 H 1.08999 * 109.50837 * 180.83850 * 16 15 14 33 33 H 1.09002 * 109.52798 * 177.56154 * 17 16 15 34 34 H 1.09004 * 109.51612 * 297.68649 * 17 16 15 35 35 H 1.09004 * 109.47356 * 55.00576 * 20 18 17 36 36 H 1.09005 * 109.47251 * 175.00318 * 20 18 17 37 37 H 1.00903 * 110.99989 * 179.97438 * 21 20 18 38 38 H 1.00899 * 110.99731 * 303.95842 * 21 20 18 39 39 H 1.08995 * 109.46329 * 294.17824 * 22 14 13 40 40 H 1.09003 * 109.45697 * 54.14573 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1131 -1.8995 -0.0049 13 6 5.8274 -4.2422 0.0065 14 7 7.2964 -4.2421 0.0059 15 6 7.8232 -3.6798 1.2559 16 6 9.3460 -3.5609 1.1616 17 6 9.9466 -4.9468 0.9105 18 6 9.3454 -5.5305 -0.3710 19 1 9.6083 -4.8965 -1.2179 20 6 9.8960 -6.9398 -0.5977 21 7 11.3422 -6.8666 -0.8456 22 6 7.8227 -5.5923 -0.2322 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6796 0.8896 25 1 3.8746 -0.6806 -0.8905 26 1 3.3697 -3.3125 0.0045 27 1 5.4649 -4.7517 0.8992 28 1 5.4634 -4.7602 -0.8808 29 1 7.3913 -2.6925 1.4204 30 1 7.5607 -4.3339 2.0874 31 1 9.6088 -2.8960 0.3389 32 1 9.7381 -3.1574 2.0951 33 1 11.0276 -4.8608 0.7995 34 1 9.7178 -5.6008 1.7520 35 1 9.7093 -7.5495 0.2864 36 1 9.4020 -7.3887 -1.4594 37 1 11.7299 -7.7856 -0.9980 38 1 11.5454 -6.2547 -1.6216 39 1 7.5602 -6.2374 0.6062 40 1 7.3904 -5.9941 -1.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044529201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:19 Heat of formation + Delta-G solvation = -70.376838 kcal Electronic energy + Delta-G solvation = -19107.367972 eV Core-core repulsion = 16148.131416 eV Total energy + Delta-G solvation = -2959.236557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97497 -39.57211 -36.40761 -35.91360 -34.41669 -33.72138 -31.48127 -30.46504 -28.08418 -25.81575 -24.46589 -23.56201 -22.38496 -21.34548 -20.66547 -19.12271 -17.73026 -17.38530 -16.80341 -16.60931 -16.03856 -15.98409 -15.73267 -15.60033 -15.23872 -15.06197 -14.58182 -14.29784 -14.17697 -13.79555 -13.66779 -13.11409 -13.04698 -12.84873 -12.68827 -12.59302 -11.95777 -11.94314 -11.66203 -11.53464 -11.41547 -11.24741 -10.92510 -10.59633 -9.89386 -9.51734 -9.23778 -8.40822 -6.47578 1.31956 1.34166 1.46819 1.76862 2.26828 2.30916 2.94635 3.02684 3.65838 3.84387 3.91944 4.00791 4.07390 4.27494 4.33616 4.38446 4.50162 4.55223 4.62545 4.67920 4.75002 4.79917 4.83076 4.98233 5.03199 5.07051 5.14244 5.22344 5.26323 5.44173 5.53041 5.55829 5.97806 6.11320 6.16643 6.30449 6.53680 6.65121 6.88944 7.15952 7.46447 8.73933 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.050732 B = 0.003706 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.792550 B = 7552.974193 C = 7862.842030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.234 3.766 10 N -0.708 5.708 11 C 0.498 3.502 12 O -0.579 6.579 13 C 0.047 3.953 14 N -0.538 5.538 15 C 0.052 3.948 16 C -0.112 4.112 17 C -0.097 4.097 18 C -0.079 4.079 19 H 0.064 0.936 20 C 0.074 3.926 21 N -0.857 5.857 22 C 0.063 3.937 23 H 0.272 0.728 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.408 0.592 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.350 0.650 38 H 0.344 0.656 39 H 0.045 0.955 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 -15.923 -0.166 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.359 5.359 11 C 0.285 3.715 12 O -0.459 6.459 13 C -0.084 4.084 14 N -0.263 5.263 15 C -0.075 4.075 16 C -0.150 4.150 17 C -0.134 4.134 18 C -0.098 4.098 19 H 0.082 0.918 20 C -0.058 4.058 21 N -0.388 5.388 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.244 0.756 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.063 0.937 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.122 -14.557 0.187 24.836 hybrid contribution -1.079 -0.055 -0.303 1.122 sum 19.043 -14.612 -0.116 24.003 Atomic orbital electron populations 1.69975 1.07658 1.28612 1.50770 1.25596 0.95534 1.02649 0.93617 0.85859 0.79201 0.79403 0.79426 1.19040 1.19766 1.18622 1.21305 0.89977 0.94587 1.52510 0.92177 1.19040 0.93267 0.81221 0.95424 1.46030 1.06800 1.09586 1.73502 1.21293 0.81894 0.92657 0.75662 1.90609 1.56039 1.47964 1.51304 1.21932 0.89375 0.91976 1.05070 1.61471 1.05294 1.23098 1.36482 1.22170 0.96573 0.99545 0.89253 1.21537 0.93505 0.98395 1.01582 1.21444 1.00390 0.94694 0.96885 1.21122 0.93330 0.96685 0.98644 0.91765 1.21684 0.88223 0.95344 1.00505 1.58644 1.12771 1.17354 1.50021 1.22166 0.95295 0.87491 1.01558 0.91837 0.97213 0.97325 0.75611 0.89953 0.85486 0.92241 0.94699 0.92954 0.91103 0.90863 0.92217 0.90849 0.94600 0.83642 0.84330 0.93692 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.96 21.45 0.30 -55.58 16 2 C 0.03 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.94 44.61 27.47 68.60 1.88 46.49 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 7 C -0.55 -30.32 9.83 25.60 0.25 -30.07 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.64 4.50 85.63 0.38 12.02 16 10 N -0.71 -28.31 5.55 -466.78 -2.59 -30.90 16 11 C 0.50 18.63 7.50 87.65 0.66 19.29 16 12 O -0.58 -26.53 14.35 -3.04 -0.04 -26.57 16 13 C 0.05 1.21 5.45 85.55 0.47 1.68 16 14 N -0.54 -14.07 4.39 -900.94 -3.96 -18.02 16 15 C 0.05 1.44 5.11 86.32 0.44 1.88 16 16 C -0.11 -2.66 6.09 30.64 0.19 -2.47 16 17 C -0.10 -1.82 5.14 30.67 0.16 -1.67 16 18 C -0.08 -1.36 2.49 -10.75 -0.03 -1.39 16 19 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 20 C 0.07 0.95 6.18 86.30 0.53 1.48 16 21 N -0.86 -10.16 9.13 -186.71 -1.70 -11.86 16 22 C 0.06 1.16 4.74 86.32 0.41 1.57 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 25 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 26 H 0.41 14.06 8.32 -92.71 -0.77 13.28 16 27 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 28 H 0.13 2.60 7.98 -2.39 -0.02 2.58 16 29 H 0.06 2.09 5.80 -2.38 -0.01 2.07 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.38 7.83 -2.39 -0.02 1.37 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.35 2.92 9.08 -89.69 -0.81 2.11 16 38 H 0.34 3.77 8.99 -89.69 -0.81 2.96 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 Total: -1.00 -69.14 318.30 -3.59 -72.73 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -1.40 Total: 19.43 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 3.92 Total: 4.28 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -7.95 Total: -116.36 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -69.14 -3.59 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044529201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.351 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds