Wall clock time and date at job start Mon Mar 30 2020 05:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48502 * 109.46781 * 239.99988 * 3 2 1 5 5 H 1.48494 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47237 * 119.99951 * 3 2 1 7 7 C 1.37877 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00137 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99521 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.99477 * 179.72624 * 11 10 9 14 14 N 1.46897 * 109.46780 * 180.27557 * 13 11 10 15 15 C 1.46848 * 111.00250 * 288.15640 * 14 13 11 16 16 C 1.53033 * 109.52687 * 174.16522 * 15 14 13 17 17 C 1.53117 * 109.27849 * 59.17629 * 16 15 14 18 18 C 1.53119 * 109.16151 * 302.34827 * 17 16 15 19 19 C 1.46848 * 110.99932 * 163.95026 * 14 13 11 20 20 H 1.09001 * 109.46480 * 65.81958 * 19 14 13 21 21 C 1.52997 * 109.46029 * 305.85322 * 19 14 13 22 22 N 1.46899 * 109.47305 * 306.30504 * 21 19 14 23 23 H 0.96996 * 119.99705 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46764 * 60.00193 * 9 7 2 25 25 H 1.08998 * 109.47215 * 299.99690 * 9 7 2 26 26 H 0.96996 * 119.99717 * 0.02562 * 10 9 7 27 27 H 1.08991 * 109.46917 * 300.27529 * 13 11 10 28 28 H 1.09004 * 109.46816 * 60.27592 * 13 11 10 29 29 H 1.09002 * 109.46409 * 294.17930 * 15 14 13 30 30 H 1.09004 * 109.46070 * 54.14476 * 15 14 13 31 31 H 1.09001 * 109.49900 * 299.23774 * 16 15 14 32 32 H 1.08995 * 109.53633 * 179.14250 * 16 15 14 33 33 H 1.09008 * 109.52036 * 182.44060 * 17 16 15 34 34 H 1.09004 * 109.52050 * 62.25854 * 17 16 15 35 35 H 1.08999 * 109.50394 * 297.71231 * 18 17 16 36 36 H 1.09002 * 109.53137 * 177.61472 * 18 17 16 37 37 H 1.09007 * 109.47392 * 66.30417 * 21 19 14 38 38 H 1.09002 * 109.47545 * 186.30669 * 21 19 14 39 39 H 1.00899 * 111.00210 * 184.72547 * 22 21 19 40 40 H 1.00897 * 110.99879 * 308.68459 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7537 -4.8833 0.0019 12 8 0.5614 -5.1049 0.0019 13 6 2.7330 -6.0288 -0.0046 14 7 1.9985 -7.3009 -0.0095 15 6 1.3670 -7.5491 1.2929 16 6 0.4946 -8.8035 1.2077 17 6 1.3644 -9.9977 0.8054 18 6 2.0484 -9.6940 -0.5304 19 6 2.8758 -8.4137 -0.3947 20 1 3.6404 -8.5547 0.3692 21 6 3.5453 -8.0953 -1.7331 22 7 2.5174 -7.7567 -2.7265 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8920 26 1 3.1566 -3.4354 0.0010 27 1 3.3585 -5.9670 -0.8951 28 1 3.3608 -5.9751 0.8849 29 1 2.1387 -7.6941 2.0489 30 1 0.7481 -6.6940 1.5652 31 1 -0.2858 -8.6540 0.4616 32 1 0.0379 -8.9965 2.1783 33 1 0.7395 -10.8848 0.7013 34 1 2.1208 -10.1717 1.5708 35 1 1.2925 -9.5585 -1.3039 36 1 2.7023 -10.5228 -0.8018 37 1 4.2225 -7.2502 -1.6086 38 1 4.1077 -8.9645 -2.0740 39 1 2.9273 -7.6173 -3.6378 40 1 1.7981 -8.4635 -2.7577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044557090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:34 Heat of formation + Delta-G solvation = -65.021842 kcal Electronic energy + Delta-G solvation = -19585.222583 eV Core-core repulsion = 16626.218236 eV Total energy + Delta-G solvation = -2959.004347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97329 -39.53219 -36.07433 -35.45673 -34.39974 -34.22178 -31.09036 -29.98352 -27.96460 -26.22046 -24.85429 -23.78044 -22.09524 -21.22446 -20.28892 -18.88548 -17.55381 -17.24778 -16.96327 -16.70902 -16.42704 -15.92143 -15.56517 -15.29654 -15.00041 -14.61648 -14.34698 -14.03552 -13.89780 -13.83216 -13.63200 -13.32373 -12.90290 -12.72404 -12.66387 -12.52636 -12.21867 -12.02533 -11.60519 -11.48950 -11.35456 -11.03110 -10.76657 -10.52859 -9.73280 -9.31778 -9.04310 -8.27007 -6.43990 1.43333 1.48075 1.56192 1.92718 2.31698 2.51430 3.07354 3.11722 3.79295 3.84500 3.92232 4.00206 4.08015 4.26158 4.35528 4.38976 4.39553 4.52668 4.65791 4.69652 4.83144 4.93306 4.98724 5.06239 5.07828 5.15401 5.25583 5.27685 5.32620 5.50605 5.52985 5.76028 5.88399 6.13912 6.25677 6.51250 6.67514 6.76587 7.04255 7.25924 7.63560 8.85196 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.004266 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.199616 B = 6562.214199 C = 6943.077929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.271 3.729 10 N -0.714 5.714 11 C 0.498 3.502 12 O -0.583 6.583 13 C 0.053 3.947 14 N -0.513 5.513 15 C 0.055 3.945 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.082 3.918 20 H 0.054 0.946 21 C 0.066 3.934 22 N -0.852 5.852 23 H 0.268 0.732 24 H -0.018 1.018 25 H -0.017 1.017 26 H 0.405 0.595 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.343 0.657 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -20.332 -0.756 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.148 3.852 10 N -0.365 5.365 11 C 0.285 3.715 12 O -0.463 6.463 13 C -0.078 4.078 14 N -0.238 5.238 15 C -0.073 4.073 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.026 4.026 20 H 0.071 0.929 21 C -0.064 4.064 22 N -0.384 5.384 23 H 0.077 0.923 24 H 0.000 1.000 25 H 0.001 0.999 26 H 0.240 0.760 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.647 -19.710 -0.651 21.954 hybrid contribution 0.907 0.392 0.159 1.000 sum 10.554 -19.318 -0.492 22.019 Atomic orbital electron populations 1.70147 1.08350 1.28584 1.50007 1.26094 0.95767 1.03958 0.93824 0.85193 0.77898 0.76506 0.79519 1.18612 1.21060 1.18596 1.21605 0.94275 0.90631 1.52905 0.89852 1.18446 0.88667 0.84450 0.93632 1.46184 1.10896 1.05610 1.73816 1.21377 0.90069 0.84596 0.75479 1.90603 1.19279 1.85239 1.51211 1.21891 0.93845 0.87968 1.04076 1.61287 1.32576 1.00426 1.29518 1.22108 0.97362 0.98642 0.89180 1.21510 0.98025 0.93952 1.01441 1.21546 0.98987 0.97265 0.97273 1.21629 0.99368 0.95633 0.98085 1.21873 0.93489 0.90800 0.96456 0.92867 1.21919 0.93331 0.99777 0.91419 1.58499 1.15233 1.54039 1.10643 0.92284 0.99973 0.99896 0.75972 0.85857 0.90937 0.94572 0.93575 0.93112 0.90995 0.90528 0.91322 0.91926 0.89401 0.91139 0.92969 0.84396 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 43.12 29.54 68.60 2.03 45.15 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.59 5.43 85.63 0.46 16.06 16 10 N -0.71 -32.01 5.55 -466.77 -2.59 -34.60 16 11 C 0.50 21.43 7.52 87.66 0.66 22.09 16 12 O -0.58 -30.89 14.84 -3.01 -0.04 -30.93 16 13 C 0.05 1.59 5.26 85.56 0.45 2.04 16 14 N -0.51 -14.59 3.82 -875.65 -3.34 -17.93 16 15 C 0.05 1.60 5.11 86.32 0.44 2.04 16 16 C -0.11 -2.67 6.09 30.64 0.19 -2.49 16 17 C -0.11 -1.93 6.00 30.67 0.18 -1.75 16 18 C -0.11 -1.82 5.19 30.64 0.16 -1.66 16 19 C 0.08 1.61 2.21 44.93 0.10 1.71 16 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 21 C 0.07 1.15 5.76 86.30 0.50 1.65 16 22 N -0.85 -17.87 9.35 -186.72 -1.75 -19.62 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 25 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.41 15.02 8.32 -92.71 -0.77 14.25 16 27 H 0.12 3.25 5.52 -2.39 -0.01 3.24 16 28 H 0.07 1.84 8.05 -2.38 -0.02 1.82 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.74 6.35 -2.38 -0.02 1.73 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.20 6.59 -2.39 -0.02 1.19 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.24 6.37 -2.38 -0.02 1.22 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.34 5.94 9.08 -89.69 -0.81 5.12 16 40 H 0.34 6.95 7.16 -89.70 -0.64 6.31 16 Total: -1.00 -75.09 315.77 -2.74 -77.84 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -1.17 Total: 28.23 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 3.84 Total: 9.34 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -7.39 Total: -129.61 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.04 Total: -30.93 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.09 -2.74 -77.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044557090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.814 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds