Wall clock time and date at job start Mon Mar 30 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48505 * 109.47062 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.46880 * 30.00058 * 3 2 1 6 6 H 1.48498 * 109.47109 * 150.00032 * 3 2 1 7 7 C 1.37878 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00090 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00102 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99874 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.46910 * 109.47062 * 176.99093 * 13 11 10 15 15 C 1.46846 * 110.99867 * 300.40447 * 14 13 11 16 16 C 1.53041 * 109.51951 * 185.83902 * 15 14 13 17 17 C 1.53124 * 109.30956 * 300.83752 * 16 15 14 18 18 C 1.53118 * 109.15625 * 57.59640 * 17 16 15 19 19 C 1.46849 * 110.99677 * 64.61189 * 14 13 11 20 20 H 1.09007 * 109.46050 * 294.17561 * 19 14 13 21 21 C 1.52999 * 109.46158 * 54.14064 * 19 14 13 22 22 N 1.46906 * 109.46742 * 53.56842 * 21 19 14 23 23 H 0.96993 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47385 * 59.99880 * 9 7 2 25 25 H 1.08997 * 109.46922 * 299.99631 * 9 7 2 26 26 H 0.97002 * 119.99375 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47008 * 56.99535 * 13 11 10 28 28 H 1.08996 * 109.47163 * 296.99368 * 13 11 10 29 29 H 1.09001 * 109.46303 * 305.85006 * 15 14 13 30 30 H 1.08993 * 109.46673 * 65.83176 * 15 14 13 31 31 H 1.09001 * 109.50223 * 60.76002 * 16 15 14 32 32 H 1.08996 * 109.50225 * 180.87997 * 16 15 14 33 33 H 1.09003 * 109.49149 * 297.71387 * 17 16 15 34 34 H 1.08997 * 109.55694 * 177.52092 * 17 16 15 35 35 H 1.09003 * 109.50561 * 182.44299 * 18 17 16 36 36 H 1.08998 * 109.50363 * 62.36677 * 18 17 16 37 37 H 1.09001 * 109.46571 * 173.55950 * 21 19 14 38 38 H 1.08998 * 109.47734 * 293.56351 * 21 19 14 39 39 H 1.00901 * 111.00107 * 59.26267 * 22 21 19 40 40 H 1.00898 * 110.99703 * 183.21290 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6128 -0.0015 11 6 1.7537 -4.8834 -0.0029 12 8 0.5613 -5.1050 -0.0039 13 6 2.7330 -6.0288 -0.0032 14 7 1.9998 -7.2999 0.0678 15 6 1.1829 -7.3688 1.2862 16 6 0.5503 -8.7577 1.3998 17 6 -0.3170 -9.0215 0.1657 18 6 0.5471 -8.8950 -1.0920 19 6 1.1798 -7.5023 -1.1335 20 1 0.3943 -6.7473 -1.1683 21 6 2.0605 -7.3791 -2.3785 22 7 3.2071 -8.2897 -2.2591 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5564 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 3.1566 -3.4355 -0.0010 27 1 3.3939 -5.9420 0.8591 28 1 3.3242 -6.0011 -0.9185 29 1 1.8126 -7.1843 2.1566 30 1 0.3973 -6.6147 1.2399 31 1 1.3354 -9.5114 1.4600 32 1 -0.0684 -8.8035 2.2959 33 1 -1.1258 -8.2919 0.1269 34 1 -0.7344 -10.0269 0.2213 35 1 -0.0739 -9.0390 -1.9762 36 1 1.3321 -9.6509 -1.0718 37 1 1.4788 -7.6413 -3.2622 38 1 2.4188 -6.3538 -2.4703 39 1 2.9007 -9.2460 -2.1608 40 1 3.8319 -8.1893 -3.0450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044557093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:37 Heat of formation + Delta-G solvation = -65.205512 kcal Electronic energy + Delta-G solvation = -19895.041122 eV Core-core repulsion = 16936.028811 eV Total energy + Delta-G solvation = -2959.012311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43539 -39.21326 -36.15864 -35.45493 -34.41363 -34.23744 -31.08843 -29.99633 -27.92805 -26.20492 -24.83281 -23.73042 -22.16230 -21.37273 -20.48657 -18.81679 -17.46927 -17.31329 -17.04649 -16.71910 -16.50556 -16.06116 -15.75594 -15.24115 -15.09354 -14.63955 -14.35695 -14.08446 -13.90871 -13.72423 -13.48251 -13.19653 -12.90180 -12.75306 -12.70208 -12.53998 -12.24963 -11.72878 -11.59359 -11.49878 -11.27890 -11.27172 -11.01976 -10.81246 -9.79782 -9.40153 -8.97984 -8.31338 -6.48624 1.41315 1.43742 1.55199 1.74373 2.31776 2.64591 2.95679 3.03205 3.80761 3.84818 3.94471 3.97409 4.12460 4.24339 4.35478 4.46331 4.57606 4.60953 4.71397 4.77839 4.82914 4.97350 5.03773 5.05267 5.12285 5.14291 5.20922 5.27230 5.30408 5.46711 5.54788 5.70779 5.83349 6.09448 6.14620 6.40696 6.63091 6.79022 6.91284 7.21400 7.49927 8.80570 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.034221 B = 0.004611 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.006369 B = 6070.712669 C = 6400.236989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.461 3.539 12 O -0.592 6.592 13 C 0.047 3.953 14 N -0.474 5.474 15 C 0.030 3.970 16 C -0.105 4.105 17 C -0.120 4.120 18 C -0.103 4.103 19 C 0.067 3.933 20 H 0.033 0.967 21 C 0.072 3.928 22 N -0.829 5.829 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.017 1.017 26 H 0.407 0.593 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.346 0.654 40 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 -18.186 -2.341 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.145 3.855 10 N -0.359 5.359 11 C 0.248 3.752 12 O -0.474 6.474 13 C -0.085 4.085 14 N -0.196 5.196 15 C -0.098 4.098 16 C -0.142 4.142 17 C -0.158 4.158 18 C -0.141 4.141 19 C -0.042 4.042 20 H 0.051 0.949 21 C -0.060 4.060 22 N -0.361 5.361 23 H 0.077 0.923 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.242 0.758 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.942 -18.220 -1.653 19.568 hybrid contribution -0.955 1.702 -0.870 2.137 sum 5.986 -16.518 -2.524 17.750 Atomic orbital electron populations 1.70141 1.08346 1.28562 1.50069 1.26083 0.95757 1.03975 0.93778 0.85151 0.78515 0.76880 0.78651 1.19526 1.20937 1.17851 1.21638 0.94296 0.90653 1.52829 0.89854 1.18465 0.88725 0.84661 0.93600 1.46405 1.11055 1.05916 1.72493 1.23058 0.90865 0.85760 0.75548 1.90563 1.19451 1.84976 1.52460 1.22416 0.95151 0.84371 1.06590 1.62420 1.27471 1.27946 1.01750 1.22384 0.96603 0.98250 0.92561 1.21491 0.99060 0.95816 0.97862 1.21560 0.97580 1.01556 0.95109 1.21556 0.98964 0.95694 0.97842 1.21899 0.94246 0.97871 0.90184 0.94921 1.21699 0.92208 0.97134 0.94913 1.58513 1.17829 1.10182 1.49604 0.92270 0.99899 0.99950 0.75765 0.86430 0.85788 0.91124 0.95317 0.90105 0.91347 0.94593 0.89894 0.91475 0.89615 0.94724 0.92872 0.83944 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.56 -30.70 9.28 25.60 0.24 -30.47 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 15.03 5.43 85.63 0.46 15.50 16 10 N -0.71 -30.48 5.55 -466.78 -2.59 -33.07 16 11 C 0.46 18.57 7.24 87.66 0.63 19.20 16 12 O -0.59 -28.81 11.62 -3.05 -0.04 -28.85 16 13 C 0.05 1.35 5.45 85.55 0.47 1.82 16 14 N -0.47 -13.29 4.38 -875.64 -3.84 -17.13 16 15 C 0.03 0.90 5.00 86.33 0.43 1.33 16 16 C -0.10 -2.44 6.09 30.65 0.19 -2.25 16 17 C -0.12 -2.77 6.01 30.68 0.18 -2.58 16 18 C -0.10 -2.27 5.18 30.64 0.16 -2.11 16 19 C 0.07 1.88 1.82 44.94 0.08 1.96 16 20 H 0.03 1.25 5.78 -2.38 -0.01 1.23 16 21 C 0.07 1.70 5.70 86.30 0.49 2.19 16 22 N -0.83 -14.89 9.20 -186.71 -1.72 -16.61 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 25 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 26 H 0.41 14.58 8.32 -92.71 -0.77 13.81 16 27 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.12 3.24 6.01 -2.39 -0.01 3.22 16 29 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 30 H 0.03 1.12 5.58 -2.39 -0.01 1.10 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.59 6.76 -2.39 -0.02 1.58 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 1.43 6.62 -2.39 -0.02 1.42 16 39 H 0.35 5.37 7.41 -89.69 -0.66 4.71 16 40 H 0.34 4.92 9.08 -89.70 -0.81 4.10 16 Total: -1.00 -70.65 310.40 -3.26 -73.91 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -1.19 Total: 28.52 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.80 Total: 5.25 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -7.86 Total: -123.53 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.65 -3.26 -73.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044557093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.703 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds