Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47328 * 2 1 4 4 C 1.34222 * 117.00375 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99900 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00130 * 179.97438 * 4 3 2 7 7 C 1.53124 * 109.52100 * 60.32139 * 6 4 3 8 8 C 1.53039 * 109.27498 * 177.55769 * 7 6 4 9 9 N 1.46843 * 109.52391 * 300.81655 * 8 7 6 10 10 C 1.46901 * 111.00022 * 185.84211 * 9 8 7 11 11 H 1.09000 * 109.47018 * 185.79312 * 10 9 8 12 12 C 1.53004 * 109.47031 * 305.78980 * 10 9 8 13 13 C 1.50697 * 109.46966 * 65.79105 * 10 9 8 14 14 H 1.07997 * 120.00003 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99500 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00684 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99875 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46829 * 0.02562 * 17 15 13 19 19 H 1.48490 * 109.47080 * 120.00253 * 17 15 13 20 20 H 1.48496 * 109.47310 * 240.00469 * 17 15 13 21 21 C 1.46854 * 111.19690 * 61.74512 * 9 8 7 22 22 C 1.53029 * 109.52283 * 298.25524 * 21 9 8 23 23 H 1.09006 * 109.46903 * 300.00033 * 1 2 3 24 24 H 1.08995 * 109.47317 * 60.00330 * 1 2 3 25 25 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47071 * 239.99403 * 2 1 3 27 27 H 1.09003 * 109.47142 * 119.99954 * 2 1 3 28 28 H 1.08998 * 109.57437 * 300.15845 * 6 4 3 29 29 H 1.08997 * 109.50088 * 297.49678 * 7 6 4 30 30 H 1.09004 * 109.50324 * 57.61852 * 7 6 4 31 31 H 1.09001 * 109.45805 * 180.80724 * 8 7 6 32 32 H 1.08997 * 109.46104 * 60.83468 * 8 7 6 33 33 H 1.08994 * 109.47144 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.47370 * 300.00481 * 12 10 9 35 35 H 1.09000 * 109.46948 * 60.00289 * 12 10 9 36 36 H 0.96992 * 120.00614 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.45788 * 178.23958 * 21 9 8 38 38 H 1.09003 * 109.45264 * 58.26841 * 21 9 8 39 39 H 1.08994 * 109.50822 * 299.23828 * 22 21 9 40 40 H 1.09001 * 109.50199 * 179.11868 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4553 3.6841 1.2532 8 6 4.0920 5.0755 1.2778 9 7 5.5547 4.9460 1.2784 10 6 6.1992 6.2560 1.4413 11 1 7.2784 6.1457 1.3354 12 6 5.6775 7.2175 0.3715 13 6 5.8820 6.8053 2.8082 14 1 5.2638 6.2379 3.4881 15 6 6.3818 8.0319 3.1912 16 7 7.1349 8.7228 2.3635 17 14 5.9881 8.7133 4.8854 18 1 5.1278 7.7501 5.6186 19 1 7.2497 8.9233 5.6399 20 1 5.2741 10.0077 4.7447 21 6 6.0287 4.2739 0.0617 22 6 5.4499 2.8586 0.0008 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.5839 3.4715 -0.8885 29 1 2.3698 3.7808 1.2370 30 1 3.7587 3.1293 2.1411 31 1 3.7740 5.6045 2.1763 32 1 3.7772 5.6346 0.3967 33 1 6.1553 8.1897 0.4926 34 1 5.9069 6.8202 -0.6172 35 1 4.5983 7.3279 0.4774 36 1 7.4862 9.5858 2.6327 37 1 7.1173 4.2208 0.0769 38 1 5.7047 4.8369 -0.8136 39 1 5.7846 2.2908 0.8688 40 1 5.7893 2.3656 -0.9102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048208946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -113.875367 kcal Electronic energy + Delta-G solvation = -19650.161744 eV Core-core repulsion = 16656.746198 eV Total energy + Delta-G solvation = -2993.415546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75618 -39.87273 -37.74528 -36.06506 -33.95832 -32.56232 -31.74368 -30.20935 -27.29784 -26.45367 -24.14101 -23.96952 -22.75367 -21.57982 -20.27862 -18.70820 -18.17061 -17.62995 -17.50344 -16.86772 -15.94871 -15.66130 -15.42837 -15.07385 -14.80428 -14.50109 -14.27072 -13.94933 -13.56933 -13.54295 -13.03983 -12.92824 -12.87641 -12.79757 -12.57845 -12.49600 -12.36041 -12.26517 -11.94296 -11.83493 -11.56331 -11.48694 -11.41477 -11.13345 -10.80155 -10.45901 -8.79528 -8.07789 -6.18154 1.13701 1.43215 1.45778 1.57020 1.67073 2.45509 3.21510 3.36446 3.55885 3.78474 3.84687 4.02375 4.10350 4.22974 4.30704 4.36561 4.46479 4.57976 4.71879 4.74100 4.82991 4.84860 4.91569 4.94315 4.95250 5.05711 5.13940 5.15025 5.19542 5.21874 5.36628 5.47949 5.58350 5.75281 5.85055 6.26403 6.54619 6.71462 6.79640 6.96228 7.51358 8.98416 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.004558 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.518154 B = 6142.064745 C = 6576.535099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.476 3.524 5 O -0.537 6.537 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.066 3.934 9 N -0.545 5.545 10 C 0.215 3.785 11 H 0.004 0.996 12 C -0.157 4.157 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.957 3.043 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.281 1.281 21 C 0.056 3.944 22 C -0.088 4.088 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.036 0.964 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 -13.308 -6.320 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.320 3.680 5 O -0.427 6.427 6 C -0.094 4.094 7 C -0.133 4.133 8 C -0.062 4.062 9 N -0.270 5.270 10 C 0.108 3.892 11 H 0.022 0.978 12 C -0.217 4.217 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.072 4.072 22 C -0.126 4.126 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.908 -13.764 -5.919 19.138 hybrid contribution 0.188 0.981 0.168 1.013 sum -11.720 -12.783 -5.751 18.271 Atomic orbital electron populations 1.21821 0.90358 1.04350 1.03741 1.23305 0.97162 0.79317 1.02491 1.86524 1.23821 1.33675 1.83488 1.23924 0.80645 0.92534 0.70883 1.90631 1.61149 1.44051 1.46841 1.21178 0.96417 0.89149 1.02648 1.21546 1.01057 0.95108 0.95600 1.21914 0.87840 0.95582 1.00827 1.62158 1.06133 1.22570 1.36091 1.19050 0.92578 0.83655 0.93959 0.97765 1.22194 0.99614 1.03039 0.96824 1.21411 1.30878 1.02617 1.00010 0.92532 1.25668 0.95129 0.97276 1.00655 1.70015 1.35408 1.13952 1.36847 0.85517 0.77820 0.78128 0.80209 1.19214 1.21015 1.20652 1.22028 0.99608 0.93986 0.91556 1.21395 0.91970 0.96220 1.02985 0.91406 0.91144 0.88159 0.91170 0.91613 0.85890 0.88635 0.92014 0.91443 0.94846 0.92195 0.95543 0.94538 0.93067 0.91728 0.94747 0.91965 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.29 71.98 0.74 -1.00 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.36 -8.46 10.15 -51.34 -0.52 -8.98 16 4 C 0.48 12.97 7.26 71.24 0.52 13.49 16 5 O -0.54 -17.33 15.73 21.96 0.35 -16.98 16 6 C -0.07 -1.99 2.70 -11.46 -0.03 -2.02 16 7 C -0.10 -2.72 5.31 30.65 0.16 -2.56 16 8 C 0.07 2.40 4.55 86.33 0.39 2.79 16 9 N -0.55 -22.66 4.60 -875.51 -4.02 -26.69 16 10 C 0.21 10.73 2.31 44.17 0.10 10.83 16 11 H 0.00 0.25 7.99 -2.39 -0.02 0.23 16 12 C -0.16 -7.44 8.23 71.98 0.59 -6.85 16 13 C -0.51 -27.78 7.88 25.60 0.20 -27.58 16 14 H 0.06 3.09 7.12 -2.91 -0.02 3.06 16 15 C 0.01 0.60 5.30 84.66 0.45 1.05 16 16 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 17 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C 0.06 1.97 5.13 86.32 0.44 2.41 16 22 C -0.09 -2.61 4.68 30.65 0.14 -2.47 16 23 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 2.71 6.70 -2.39 -0.02 2.69 16 32 H 0.03 1.17 6.58 -2.39 -0.02 1.16 16 33 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 34 H 0.03 1.10 6.81 -2.39 -0.02 1.09 16 35 H 0.04 1.64 6.46 -2.39 -0.02 1.62 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 38 H 0.03 1.15 6.87 -2.39 -0.02 1.13 16 39 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.58 314.69 3.23 -59.35 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.00 Total: 10.79 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.16 Total: -10.53 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -3.78 Total: -79.20 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.18 Total: -25.96 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.58 3.23 -59.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.529 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds