Wall clock time and date at job start Mon Mar 30 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 H 1.09003 * 109.47457 * 54.99812 * 3 2 1 5 5 C 1.50693 * 109.47211 * 175.00270 * 3 2 1 6 6 H 1.08001 * 120.00449 * 119.99877 * 5 3 2 7 7 C 1.37880 * 119.99612 * 300.00026 * 5 3 2 8 8 N 1.31508 * 120.00477 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99767 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47087 * 59.99848 * 9 7 5 11 11 H 1.48501 * 109.46793 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46940 * 299.99757 * 9 7 5 13 13 N 1.46510 * 109.46867 * 295.00253 * 3 2 1 14 14 C 1.34771 * 119.99929 * 85.00385 * 13 3 2 15 15 O 1.21279 * 120.00617 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99659 * 179.97438 * 14 13 3 17 17 N 1.46903 * 109.46954 * 179.97438 * 16 14 13 18 18 C 1.46961 * 110.99781 * 170.00062 * 17 16 14 19 19 C 1.53049 * 109.36212 * 183.18915 * 18 17 16 20 20 N 1.46956 * 109.37889 * 301.58202 * 19 18 17 21 21 C 1.46998 * 110.85606 * 59.31765 * 20 19 18 22 22 C 1.46954 * 110.99536 * 293.79507 * 17 16 14 23 23 H 1.09001 * 109.47350 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46859 * 300.00107 * 1 2 3 25 25 H 1.09000 * 109.47127 * 59.99610 * 1 2 3 26 26 H 1.09003 * 109.46717 * 240.00429 * 2 1 3 27 27 H 1.08991 * 109.47146 * 120.00148 * 2 1 3 28 28 H 0.96997 * 120.00435 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99487 * 264.99720 * 13 3 2 30 30 H 1.08999 * 109.47184 * 59.99518 * 16 14 13 31 31 H 1.09002 * 109.47191 * 299.99519 * 16 14 13 32 32 H 1.08997 * 109.49026 * 63.21842 * 18 17 16 33 33 H 1.09001 * 109.48575 * 303.15033 * 18 17 16 34 34 H 1.09002 * 109.49200 * 61.56352 * 19 18 17 35 35 H 1.09002 * 109.48985 * 181.60771 * 19 18 17 36 36 H 1.00899 * 111.00107 * 183.20040 * 20 19 18 37 37 H 1.09005 * 109.48570 * 180.72396 * 21 20 19 38 38 H 1.08997 * 109.50642 * 60.67078 * 21 20 19 39 39 H 1.09002 * 109.48968 * 296.77609 * 22 17 16 40 40 H 1.08993 * 109.49197 * 56.82899 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3821 11 1 6.3977 0.2177 2.6509 12 1 6.5974 0.1473 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6321 -0.4344 16 6 0.0366 3.3387 -2.6545 17 7 -1.3261 3.8722 -2.5264 18 6 -1.6621 4.7372 -3.6660 19 6 -3.0555 5.3347 -3.4559 20 7 -4.0357 4.2487 -3.3163 21 6 -3.6993 3.3834 -2.1766 22 6 -2.3059 2.7859 -2.3866 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8293 -0.0604 2.9502 29 1 2.2719 2.1231 -1.9978 30 1 0.0680 2.6146 -3.4686 31 1 0.7281 4.1542 -2.8667 32 1 -1.6530 4.1495 -4.5838 33 1 -0.9295 5.5408 -3.7410 34 1 -3.0572 5.9446 -2.5526 35 1 -3.3186 5.9540 -4.3134 36 1 -4.9716 4.6154 -3.2286 37 1 -4.4319 2.5798 -2.1015 38 1 -3.7085 3.9708 -1.2585 39 1 -2.3041 2.1761 -3.2900 40 1 -2.0424 2.1667 -1.5292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:10 Heat of formation + Delta-G solvation = -29.460032 kcal Electronic energy + Delta-G solvation = -19834.640968 eV Core-core repulsion = 16877.178697 eV Total energy + Delta-G solvation = -2957.462271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55498 -38.15108 -35.13168 -34.05062 -32.34391 -30.99210 -30.81224 -28.27956 -26.69682 -24.08427 -23.40579 -22.79009 -20.24790 -19.73519 -19.25486 -17.09129 -16.82092 -15.75654 -15.33800 -15.18387 -14.78018 -14.60398 -14.32475 -13.94139 -13.85730 -13.52169 -12.66236 -12.63689 -12.46459 -11.97269 -11.64583 -11.36455 -11.25531 -11.20758 -10.98213 -10.87563 -10.80436 -10.73139 -10.31109 -10.13226 -9.61175 -9.04169 -8.91166 -8.59532 -8.47616 -8.11993 -7.75638 -6.10641 -4.19985 3.26211 3.31639 3.32530 3.47643 3.73211 4.14164 4.28809 4.48173 4.88462 5.10577 5.18531 5.20892 5.32091 5.41609 5.46882 5.56410 5.62644 5.66929 5.75813 5.86252 6.09050 6.18926 6.39874 6.47016 6.66791 6.82631 6.98497 7.05152 7.20289 7.21668 7.27343 7.39136 7.50588 7.64401 7.77218 7.93507 8.20517 8.72615 8.81525 9.21737 9.47892 10.94618 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043201 B = 0.004631 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.973765 B = 6045.090633 C = 6457.328424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.502 3.498 15 O -0.532 6.532 16 C 0.034 3.966 17 N -0.520 5.520 18 C 0.056 3.944 19 C 0.060 3.940 20 N -0.695 5.695 21 C 0.061 3.939 22 C 0.052 3.948 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.098 0.902 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.340 0.660 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 6.045 -11.306 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.410 6.410 16 C -0.097 4.097 17 N -0.245 5.245 18 C -0.073 4.073 19 C -0.069 4.069 20 N -0.326 5.326 21 C -0.068 4.068 22 C -0.076 4.076 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.812 5.788 -10.446 15.457 hybrid contribution 1.166 0.073 -0.304 1.207 sum -8.647 5.862 -10.750 14.990 Atomic orbital electron populations 1.21837 0.98416 0.97930 1.01131 1.21932 0.92572 0.99936 1.02182 1.18740 0.94059 0.89057 0.81092 0.93352 1.21209 0.90820 1.39009 1.06259 0.92201 1.24880 0.98530 0.94832 0.95394 1.69879 1.35190 1.37606 1.09312 0.86529 0.84968 0.78293 0.77423 1.20207 1.21149 1.20196 1.46484 1.14736 1.56306 1.18512 1.20171 0.82871 0.79335 0.89019 1.90626 1.51110 1.59079 1.40187 1.22030 0.91516 0.99632 0.96566 1.61789 1.01024 1.20733 1.40938 1.22179 0.96339 0.96803 0.91965 1.21956 0.91771 0.92614 1.00603 1.60571 1.05560 1.21950 1.44521 1.21988 0.96622 0.96539 0.91681 1.22358 0.90513 0.92779 1.01903 0.95951 0.93125 0.94412 0.95151 0.88357 0.92536 0.78165 0.92665 0.88534 0.94301 0.90439 0.94196 0.90571 0.84289 0.90534 0.93954 0.95037 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.09 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.51 5.02 -54.93 -0.28 -14.79 16 14 C 0.50 9.76 6.10 -10.99 -0.07 9.69 16 15 O -0.53 -12.13 11.48 5.56 0.06 -12.06 16 16 C 0.03 0.50 5.45 -4.97 -0.03 0.48 16 17 N -0.52 -7.74 4.45 -235.90 -1.05 -8.79 16 18 C 0.06 0.66 5.61 -3.77 -0.02 0.64 16 19 C 0.06 0.64 6.72 -3.77 -0.03 0.62 16 20 N -0.69 -7.66 6.91 -113.60 -0.78 -8.45 16 21 C 0.06 0.78 6.72 -3.74 -0.03 0.75 16 22 C 0.05 0.78 5.26 -3.76 -0.02 0.76 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 25 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 30 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.10 1.25 8.03 -51.93 -0.42 0.83 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.34 2.99 8.90 -39.29 -0.35 2.64 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.84 5.85 -51.93 -0.30 1.54 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -29.92 311.79 -8.89 -38.82 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.59 Total: 8.11 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.56 Total: 1.00 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.48 Total: -56.11 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.92 -8.89 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.355 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds