Wall clock time and date at job start Mon Mar 30 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 H 1.09003 * 109.47457 * 54.99812 * 3 2 1 5 5 C 1.50693 * 109.47211 * 175.00270 * 3 2 1 6 6 H 1.08001 * 120.00449 * 119.99877 * 5 3 2 7 7 C 1.37880 * 119.99612 * 300.00026 * 5 3 2 8 8 N 1.31508 * 120.00477 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99767 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47087 * 59.99848 * 9 7 5 11 11 H 1.48501 * 109.46793 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46940 * 299.99757 * 9 7 5 13 13 N 1.46510 * 109.46867 * 295.00253 * 3 2 1 14 14 C 1.34771 * 119.99929 * 85.00385 * 13 3 2 15 15 O 1.21279 * 120.00617 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99659 * 179.97438 * 14 13 3 17 17 N 1.46903 * 109.46954 * 179.97438 * 16 14 13 18 18 C 1.46961 * 110.99781 * 170.00062 * 17 16 14 19 19 C 1.53049 * 109.36212 * 183.18915 * 18 17 16 20 20 N 1.46956 * 109.37889 * 301.58202 * 19 18 17 21 21 C 1.46998 * 110.85606 * 59.31765 * 20 19 18 22 22 C 1.46954 * 110.99536 * 293.79507 * 17 16 14 23 23 H 1.09001 * 109.47350 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46859 * 300.00107 * 1 2 3 25 25 H 1.09000 * 109.47127 * 59.99610 * 1 2 3 26 26 H 1.09003 * 109.46717 * 240.00429 * 2 1 3 27 27 H 1.08991 * 109.47146 * 120.00148 * 2 1 3 28 28 H 0.96997 * 120.00435 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99487 * 264.99720 * 13 3 2 30 30 H 1.08999 * 109.47184 * 59.99518 * 16 14 13 31 31 H 1.09002 * 109.47191 * 299.99519 * 16 14 13 32 32 H 1.08997 * 109.49026 * 63.21842 * 18 17 16 33 33 H 1.09001 * 109.48575 * 303.15033 * 18 17 16 34 34 H 1.09002 * 109.49200 * 61.56352 * 19 18 17 35 35 H 1.09002 * 109.48985 * 181.60771 * 19 18 17 36 36 H 1.00899 * 111.00107 * 183.20040 * 20 19 18 37 37 H 1.09005 * 109.48570 * 180.72396 * 21 20 19 38 38 H 1.08997 * 109.50642 * 60.67078 * 21 20 19 39 39 H 1.09002 * 109.48968 * 296.77609 * 22 17 16 40 40 H 1.08993 * 109.49197 * 56.82899 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3821 11 1 6.3977 0.2177 2.6509 12 1 6.5974 0.1473 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6321 -0.4344 16 6 0.0366 3.3387 -2.6545 17 7 -1.3261 3.8722 -2.5264 18 6 -1.6621 4.7372 -3.6660 19 6 -3.0555 5.3347 -3.4559 20 7 -4.0357 4.2487 -3.3163 21 6 -3.6993 3.3834 -2.1766 22 6 -2.3059 2.7859 -2.3866 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8293 -0.0604 2.9502 29 1 2.2719 2.1231 -1.9978 30 1 0.0680 2.6146 -3.4686 31 1 0.7281 4.1542 -2.8667 32 1 -1.6530 4.1495 -4.5838 33 1 -0.9295 5.5408 -3.7410 34 1 -3.0572 5.9446 -2.5526 35 1 -3.3186 5.9540 -4.3134 36 1 -4.9716 4.6154 -3.2286 37 1 -4.4319 2.5798 -2.1015 38 1 -3.7085 3.9708 -1.2585 39 1 -2.3041 2.1761 -3.2900 40 1 -2.0424 2.1667 -1.5292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:10 Heat of formation + Delta-G solvation = -53.407811 kcal Electronic energy + Delta-G solvation = -19835.679422 eV Core-core repulsion = 16877.178697 eV Total energy + Delta-G solvation = -2958.500725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95283 -39.41738 -36.89669 -35.20249 -34.25341 -32.82516 -31.79078 -29.72151 -28.41130 -25.46901 -24.51736 -24.38704 -21.99112 -21.01800 -20.74664 -18.85336 -17.86513 -17.34852 -17.12177 -16.55814 -16.18475 -15.81833 -15.55434 -15.24371 -15.15163 -14.78181 -14.53715 -14.00547 -13.94143 -13.46950 -13.16389 -13.01402 -12.89863 -12.72884 -12.61949 -12.23448 -12.16985 -12.01884 -11.89912 -11.78031 -11.56205 -11.03868 -10.56919 -10.39979 -9.56890 -9.51930 -9.21723 -8.14362 -6.31708 1.45401 1.47175 1.54842 1.94753 2.33941 2.53316 3.10502 3.15388 3.28606 3.92884 4.03536 4.18195 4.27066 4.35208 4.38901 4.47899 4.50223 4.54406 4.58488 4.64668 4.77514 4.88800 4.93164 5.01386 5.07527 5.12775 5.28055 5.46025 5.57884 5.67052 5.81539 5.87504 5.90764 6.02008 6.17462 6.19914 6.47935 6.77140 7.09313 7.36249 7.69231 8.90660 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.043201 B = 0.004631 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.973765 B = 6045.090633 C = 6457.328424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.570 6.570 16 C 0.046 3.954 17 N -0.541 5.541 18 C 0.055 3.945 19 C 0.060 3.940 20 N -0.693 5.693 21 C 0.066 3.934 22 C 0.055 3.945 23 H 0.043 0.957 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.402 0.598 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.104 0.896 36 H 0.354 0.646 37 H 0.088 0.912 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 6.830 -13.755 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.450 6.450 16 C -0.085 4.085 17 N -0.266 5.266 18 C -0.073 4.073 19 C -0.070 4.070 20 N -0.325 5.325 21 C -0.063 4.063 22 C -0.073 4.073 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.237 0.763 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.122 0.878 36 H 0.173 0.827 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.469 6.597 -12.946 17.343 hybrid contribution 0.992 -0.133 0.462 1.103 sum -8.476 6.464 -12.485 16.417 Atomic orbital electron populations 1.21656 0.96933 0.98958 1.00198 1.21777 0.93782 0.99288 1.01114 1.18293 0.93439 0.89024 0.81505 0.98676 1.21580 0.91596 1.38863 1.06674 0.91063 1.25765 1.03237 0.94416 0.95045 1.70042 1.37105 1.38412 1.09831 0.85446 0.79230 0.78418 0.77520 1.19696 1.21289 1.18905 1.46252 1.15761 1.56423 1.17498 1.21048 0.81784 0.78501 0.90347 1.90623 1.52034 1.60205 1.42103 1.21950 0.92220 1.00552 0.93790 1.61765 1.00832 1.20998 1.43040 1.22301 0.97470 0.96672 0.90824 1.22039 0.91184 0.92451 1.01314 1.60564 1.06606 1.22157 1.43202 1.21876 0.95831 0.97014 0.91608 1.22213 0.91755 0.92849 1.00451 0.93792 0.95689 0.93673 0.94185 0.91214 0.92671 0.76330 0.90418 0.85999 0.93670 0.88752 0.95254 0.87764 0.82707 0.89353 0.95745 0.94696 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.52 71.98 0.61 -4.80 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 3 C 0.28 14.40 2.24 44.24 0.10 14.50 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -29.01 8.73 25.60 0.22 -28.79 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.66 11.29 21.45 0.24 -52.42 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 N -0.71 -28.77 5.02 -446.09 -2.24 -31.01 16 14 C 0.50 19.22 6.10 87.66 0.53 19.76 16 15 O -0.57 -26.76 11.48 -3.02 -0.03 -26.80 16 16 C 0.05 1.26 5.45 85.56 0.47 1.73 16 17 N -0.54 -15.26 4.45 -900.25 -4.00 -19.27 16 18 C 0.05 1.13 5.61 86.31 0.48 1.62 16 19 C 0.06 1.11 6.72 86.31 0.58 1.69 16 20 N -0.69 -13.74 6.91 -513.31 -3.54 -17.29 16 21 C 0.07 1.64 6.72 86.31 0.58 2.22 16 22 C 0.06 1.62 5.26 86.31 0.45 2.08 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 25 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.40 13.67 8.54 -92.71 -0.79 12.88 16 30 H 0.08 1.83 8.12 -2.39 -0.02 1.82 16 31 H 0.12 2.76 8.03 -2.39 -0.02 2.74 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.35 5.40 8.90 -89.69 -0.80 4.61 16 37 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 2.53 5.85 -2.39 -0.01 2.52 16 Total: -1.00 -66.54 311.79 -3.46 -70.00 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.55 Total: 27.22 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 4.65 Total: 5.48 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -9.54 Total: -119.99 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.03 Total: -26.80 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.54 -3.46 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.587 kcal (2) G-P(sol) polarization free energy of solvation -66.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds