Wall clock time and date at job start Mon Mar 30 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 H 1.09003 * 109.46687 * 54.50442 * 3 2 1 5 5 C 1.50702 * 109.47007 * 174.50160 * 3 2 1 6 6 H 1.08000 * 119.99699 * 120.00434 * 5 3 2 7 7 C 1.37876 * 120.00091 * 299.99948 * 5 3 2 8 8 N 1.31519 * 119.99926 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00144 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47048 * 90.00385 * 9 7 5 11 11 H 1.48498 * 109.47551 * 210.00261 * 9 7 5 12 12 H 1.48497 * 109.47109 * 330.00498 * 9 7 5 13 13 N 1.46898 * 109.47414 * 294.50504 * 3 2 1 14 14 C 1.46895 * 111.00096 * 149.41106 * 13 3 2 15 15 C 1.53042 * 109.46197 * 202.14410 * 14 13 3 16 16 C 1.53184 * 109.31514 * 178.61740 * 15 14 13 17 17 N 1.46929 * 108.77747 * 54.63288 * 16 15 14 18 18 C 1.34777 * 120.62922 * 126.41293 * 17 16 15 19 19 N 1.34784 * 119.99858 * 4.97482 * 18 17 16 20 20 O 1.21588 * 119.99945 * 184.96911 * 18 17 16 21 21 C 1.46918 * 118.74067 * 306.39232 * 17 16 15 22 22 C 1.53048 * 109.45953 * 82.07809 * 14 13 3 23 23 H 1.08999 * 109.46552 * 305.66999 * 1 2 3 24 24 H 1.08995 * 109.46972 * 65.67259 * 1 2 3 25 25 H 1.09001 * 109.47079 * 185.67738 * 1 2 3 26 26 H 1.09001 * 109.46686 * 240.00188 * 2 1 3 27 27 H 1.08999 * 109.46947 * 120.00661 * 2 1 3 28 28 H 0.96999 * 120.00045 * 179.97438 * 8 7 5 29 29 H 1.00898 * 111.00019 * 25.45868 * 13 3 2 30 30 H 1.08998 * 109.45134 * 322.11534 * 14 13 3 31 31 H 1.08997 * 109.49396 * 298.57005 * 15 14 13 32 32 H 1.08999 * 109.49653 * 58.65968 * 15 14 13 33 33 H 1.09000 * 109.58793 * 174.42752 * 16 15 14 34 34 H 1.09003 * 109.58532 * 294.84929 * 16 15 14 35 35 H 0.96993 * 120.00130 * 4.86605 * 19 18 17 36 36 H 0.96998 * 119.99245 * 184.87666 * 19 18 17 37 37 H 1.08997 * 109.58843 * 293.82477 * 21 17 16 38 38 H 1.08998 * 109.70924 * 173.46271 * 21 17 16 39 39 H 1.09000 * 109.49677 * 301.33718 * 22 14 13 40 40 H 1.08996 * 109.49438 * 61.40009 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5986 1.9839 0.8367 5 6 3.5409 1.4446 0.1361 6 1 4.1525 1.8870 -0.6363 7 6 4.1332 0.8819 1.2468 8 7 3.3884 0.3428 2.1872 9 14 5.9936 0.8839 1.4152 10 1 6.4256 2.1188 2.1178 11 1 6.4213 -0.3049 2.1956 12 1 6.6127 0.8395 0.0662 13 7 1.6617 2.0957 -1.2602 14 6 1.4524 3.5363 -1.0643 15 6 0.5594 4.0786 -2.1826 16 6 0.3150 5.5737 -1.9559 17 7 1.6128 6.2524 -1.8373 18 6 1.9068 7.3127 -2.6156 19 7 0.9715 7.8224 -3.4416 20 8 3.0157 7.8095 -2.5726 21 6 2.5836 5.7536 -0.8539 22 6 2.8026 4.2563 -1.0930 23 1 -0.3632 0.5993 0.8349 24 1 -0.3633 0.4233 -0.9364 25 1 -0.3633 -1.0226 0.1017 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8050 -0.0534 2.9684 29 1 0.8431 1.6625 -1.6604 30 1 0.9712 3.7055 -0.1010 31 1 1.0512 3.9320 -3.1442 32 1 -0.3934 3.5491 -2.1764 33 1 -0.2372 5.9859 -2.8004 34 1 -0.2566 5.7156 -1.0387 35 1 0.0672 7.4722 -3.4251 36 1 1.2030 8.5393 -4.0526 37 1 2.1970 5.9100 0.1531 38 1 3.5289 6.2840 -0.9689 39 1 3.4465 3.8534 -0.3112 40 1 3.2735 4.1076 -2.0647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:51 Heat of formation + Delta-G solvation = -33.913311 kcal Electronic energy + Delta-G solvation = -19959.927166 eV Core-core repulsion = 17002.271786 eV Total energy + Delta-G solvation = -2957.655380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17796 -37.77155 -35.69716 -33.86399 -32.77898 -31.55569 -30.69039 -29.14485 -26.54006 -24.08232 -23.03146 -22.55730 -20.73122 -19.53810 -19.22800 -18.25686 -16.83729 -16.26473 -15.21234 -15.04028 -14.86939 -14.69492 -14.13393 -13.87807 -13.52058 -13.10612 -12.89691 -12.79268 -12.58177 -11.93213 -11.76207 -11.24699 -11.12337 -11.01044 -10.83721 -10.68574 -10.35905 -10.26165 -10.09433 -9.80921 -9.70033 -9.63979 -9.46795 -9.04030 -8.44311 -8.32069 -7.25161 -5.95644 -3.98681 2.90081 3.27327 3.34131 3.41156 3.46136 4.12582 4.46083 4.84110 4.94707 5.19925 5.32275 5.33644 5.54628 5.62729 5.76569 5.86107 6.05028 6.11496 6.12871 6.18008 6.23841 6.34699 6.38066 6.51107 6.77609 6.80748 6.89351 6.95372 7.06084 7.10155 7.20160 7.48554 7.77588 7.91596 7.94182 8.32544 8.41779 8.67245 8.75357 9.09147 9.65953 11.09611 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.006143 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.645154 B = 4557.095752 C = 5581.582626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.488 4.488 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.101 3.899 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.623 5.623 18 C 0.707 3.293 19 N -0.872 5.872 20 O -0.598 6.598 21 C 0.126 3.874 22 C -0.122 4.122 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.100 0.900 28 H 0.259 0.741 29 H 0.317 0.683 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.394 0.606 36 H 0.410 0.590 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 8.803 -7.665 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.010 4.010 15 C -0.175 4.175 16 C -0.008 4.008 17 N -0.361 5.361 18 C 0.407 3.593 19 N -0.442 5.442 20 O -0.477 6.477 21 C 0.003 3.997 22 C -0.161 4.161 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.224 0.776 36 H 0.241 0.759 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.267 8.967 -7.531 14.334 hybrid contribution -0.374 -0.048 0.384 0.538 sum -8.640 8.919 -7.147 14.327 Atomic orbital electron populations 1.21877 0.99679 0.99685 0.99419 1.21824 0.91159 1.00679 1.03103 1.19230 0.95566 0.89772 0.84218 0.97839 1.21255 0.91235 1.36070 1.04168 0.91770 1.24961 0.97929 0.95691 0.95987 1.69870 1.34650 1.39560 1.09628 0.86603 0.86008 0.77366 0.78083 1.20825 1.21471 1.19902 1.60733 1.39102 1.00631 1.30997 1.21313 0.94412 0.90203 0.95024 1.22130 1.00213 0.94185 1.00976 1.21603 0.84726 0.93273 1.01220 1.47361 1.17860 1.30600 1.40276 1.15895 0.84148 0.80311 0.78939 1.43160 1.13248 1.43358 1.44478 1.90939 1.21745 1.63655 1.71317 1.21687 0.92600 0.95633 0.89815 1.22034 0.98398 0.91520 1.04129 0.93930 0.94736 0.94435 0.94119 0.88224 0.93152 0.86479 0.94894 0.90944 0.91383 0.90937 0.91473 0.77557 0.75858 0.91979 0.89114 0.88094 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.67 37.16 0.36 -2.40 16 2 C -0.13 -2.93 5.32 -26.73 -0.14 -3.07 16 3 C 0.22 5.18 2.00 -68.87 -0.14 5.05 16 4 H 0.00 0.11 7.36 -51.93 -0.38 -0.28 16 5 C -0.49 -12.90 7.15 -34.44 -0.25 -13.14 16 6 H 0.06 1.74 7.16 -52.49 -0.38 1.36 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -24.98 11.29 55.43 0.63 -24.35 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.56 6.16 -100.91 -0.62 -14.18 16 14 C 0.10 1.73 2.43 -67.67 -0.16 1.57 16 15 C -0.14 -1.76 5.39 -26.61 -0.14 -1.91 16 16 C 0.12 1.26 6.35 -3.71 -0.02 1.23 16 17 N -0.62 -8.67 2.97 -178.50 -0.53 -9.20 16 18 C 0.71 10.37 8.57 -86.91 -0.75 9.63 16 19 N -0.87 -8.30 8.74 27.64 0.24 -8.06 16 20 O -0.60 -11.39 16.60 5.29 0.09 -11.30 16 21 C 0.13 2.00 6.44 -3.71 -0.02 1.97 16 22 C -0.12 -2.20 5.17 -26.60 -0.14 -2.34 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.10 2.57 5.94 -51.93 -0.31 2.27 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.32 5.74 6.21 -39.29 -0.24 5.50 16 30 H 0.03 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.07 0.56 5.73 -51.93 -0.30 0.26 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 2.62 6.41 -40.82 -0.26 2.35 16 36 H 0.41 3.30 8.93 -40.82 -0.36 2.93 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.55 7.00 -51.93 -0.36 1.19 16 39 H 0.10 2.12 6.12 -51.93 -0.32 1.80 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -30.92 308.79 -8.23 -39.15 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.16 Total: 9.05 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.03 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.28 Total: -55.78 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.92 -8.23 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.232 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds