Wall clock time and date at job start Mon Mar 30 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00331 * 2 1 4 4 H 1.48498 * 109.47001 * 270.00009 * 3 2 1 5 5 H 1.48504 * 109.46968 * 29.99652 * 3 2 1 6 6 H 1.48494 * 109.47469 * 149.99825 * 3 2 1 7 7 C 1.37888 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46986 * 179.97438 * 9 7 2 11 11 N 1.46490 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99998 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99987 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99942 * 180.02562 * 12 11 10 15 15 N 1.46901 * 109.47112 * 179.97438 * 14 12 11 16 16 C 1.48066 * 111.00183 * 61.63976 * 15 14 12 17 17 C 1.53695 * 112.47281 * 192.20349 * 16 15 14 18 18 C 1.50808 * 112.09689 * 318.54996 * 17 16 15 19 19 N 1.47912 * 108.49872 * 92.55270 * 18 17 16 20 20 C 1.40018 * 114.06308 * 280.07402 * 19 18 17 21 21 C 1.44573 * 110.99941 * 293.95282 * 15 14 12 22 22 H 0.96998 * 120.00350 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47148 * 59.99876 * 9 7 2 24 24 H 1.09000 * 109.46933 * 299.99751 * 9 7 2 25 25 H 1.09003 * 109.46748 * 59.99867 * 10 9 7 26 26 H 1.09004 * 109.46993 * 300.00617 * 10 9 7 27 27 H 0.96997 * 120.00174 * 359.97438 * 11 10 9 28 28 H 1.08991 * 109.47328 * 59.99529 * 14 12 11 29 29 H 1.09009 * 109.46876 * 299.99397 * 14 12 11 30 30 H 1.09004 * 108.87744 * 312.96899 * 16 15 14 31 31 H 1.08993 * 108.88100 * 71.42635 * 16 15 14 32 32 H 1.08993 * 108.95972 * 79.21953 * 17 16 15 33 33 H 1.09002 * 108.95645 * 197.96609 * 17 16 15 34 34 H 1.08999 * 109.63373 * 332.84979 * 18 17 16 35 35 H 1.09000 * 109.63047 * 212.25333 * 18 17 16 36 36 H 1.00901 * 110.99854 * 153.79205 * 19 18 17 37 37 H 1.08997 * 108.95402 * 182.47699 * 20 19 18 38 38 H 1.08996 * 108.96219 * 301.22708 * 20 19 18 39 39 H 1.08996 * 109.57717 * 100.53757 * 21 15 14 40 40 H 1.09007 * 109.67906 * 340.21636 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0981 0.0003 13 8 3.3994 -6.0981 0.0007 14 6 1.4330 -7.4031 -0.0009 15 7 2.3876 -8.5197 -0.0008 16 6 3.2307 -8.4970 1.2163 17 6 4.4289 -9.4546 1.1189 18 6 4.0519 -10.7729 0.4909 19 7 4.3021 -10.6881 -0.9644 20 6 3.2969 -10.0250 -1.6788 21 6 3.1417 -8.5568 -1.2337 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.5427 -4.9308 0.0000 28 1 0.8074 -7.4606 -0.8915 29 1 0.8054 -7.4611 0.8885 30 1 3.6009 -7.4834 1.3700 31 1 2.6204 -8.7815 2.0734 32 1 5.2084 -8.9865 0.5180 33 1 4.8170 -9.6392 2.1206 34 1 2.9959 -10.9751 0.6698 35 1 4.6584 -11.5701 0.9209 36 1 4.4804 -11.6015 -1.3544 37 1 3.5424 -10.0492 -2.7405 38 1 2.3507 -10.5431 -1.5225 39 1 4.1263 -8.1179 -1.0730 40 1 2.6130 -7.9956 -2.0044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061274818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:56 Heat of formation + Delta-G solvation = -57.174892 kcal Electronic energy + Delta-G solvation = -19244.317597 eV Core-core repulsion = 16285.653520 eV Total energy + Delta-G solvation = -2958.664077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33971 -39.41257 -36.79377 -35.80984 -34.84162 -33.42792 -31.85860 -29.71347 -27.21045 -26.72084 -25.52136 -22.95359 -21.93001 -21.60399 -20.72592 -18.64384 -18.15861 -17.86193 -17.09023 -16.70401 -16.48356 -16.38771 -15.77363 -15.41283 -15.33795 -14.96581 -14.36745 -14.16502 -14.05661 -13.81293 -13.24705 -13.00235 -12.80538 -12.56167 -12.44727 -12.26159 -12.14210 -11.96679 -11.83958 -11.67693 -11.54415 -11.49841 -11.18515 -10.62943 -10.00917 -9.22167 -9.13664 -8.26779 -6.37654 1.39729 1.40048 1.51617 1.62468 2.27429 2.45458 2.86144 3.07649 3.39827 3.88691 3.98695 4.09128 4.20464 4.25657 4.37700 4.44806 4.47904 4.52361 4.57370 4.65000 4.81078 4.81375 4.82863 5.00439 5.02735 5.14361 5.23116 5.30696 5.37808 5.48862 5.55034 5.76006 5.92094 6.11380 6.13630 6.42011 6.63816 6.72345 6.75476 7.28460 7.31835 8.84822 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.052013 B = 0.003447 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.198497 B = 8120.200225 C = 8224.570440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.717 5.717 12 C 0.470 3.530 13 O -0.584 6.584 14 C 0.043 3.957 15 N -0.518 5.518 16 C 0.044 3.956 17 C -0.115 4.115 18 C 0.077 3.923 19 N -0.713 5.713 20 C 0.089 3.911 21 C 0.061 3.939 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.411 0.589 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.356 0.644 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -22.142 -0.117 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.369 5.369 12 C 0.256 3.744 13 O -0.465 6.465 14 C -0.088 4.088 15 N -0.241 5.241 16 C -0.083 4.083 17 C -0.153 4.153 18 C -0.052 4.052 19 N -0.347 5.347 20 C -0.043 4.043 21 C -0.068 4.068 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.247 0.753 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.110 -21.908 -0.036 22.128 hybrid contribution -0.265 1.540 -0.040 1.563 sum 2.846 -20.368 -0.076 20.566 Atomic orbital electron populations 1.70045 1.07492 1.28069 1.50857 1.25864 0.95815 1.03068 0.94336 0.85453 0.78608 0.78478 0.78571 1.19707 1.20337 1.19195 1.21470 0.93476 0.92109 1.51762 0.92603 1.19119 0.94173 0.91724 0.96338 1.21136 0.95002 0.82854 0.99221 1.46318 1.11171 1.05689 1.73687 1.22819 0.88758 0.87581 0.75206 1.90644 1.15967 1.88143 1.51710 1.22550 0.95547 0.83451 1.07270 1.61352 1.20310 1.39517 1.02872 1.22618 0.94627 0.99232 0.91809 1.21399 0.96704 0.95911 1.01294 1.21588 1.00049 0.96585 0.86945 1.57568 1.47739 1.25398 1.03952 1.20717 0.93078 0.93213 0.97295 1.21947 0.97030 0.97006 0.90810 0.92458 0.97284 0.97281 0.94145 0.94115 0.75277 0.85359 0.85512 0.94793 0.90340 0.93530 0.89980 0.93586 0.89588 0.82316 0.90417 0.95358 0.94991 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.14 6.17 5.61 86.38 0.48 6.66 16 11 N -0.72 -24.20 5.56 -463.07 -2.57 -26.77 16 12 C 0.47 15.01 7.11 87.66 0.62 15.64 16 13 O -0.58 -23.39 12.54 -3.04 -0.04 -23.43 16 14 C 0.04 0.95 5.63 85.56 0.48 1.43 16 15 N -0.52 -12.15 4.11 -899.78 -3.70 -15.85 16 16 C 0.04 1.10 5.13 86.31 0.44 1.54 16 17 C -0.11 -2.52 5.36 30.12 0.16 -2.36 16 18 C 0.08 1.34 6.23 85.40 0.53 1.87 16 19 N -0.71 -13.05 6.21 -528.24 -3.28 -16.32 16 20 C 0.09 1.72 6.11 87.95 0.54 2.25 16 21 C 0.06 1.54 4.27 87.15 0.37 1.91 16 22 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.41 11.60 8.47 -92.71 -0.79 10.81 16 28 H 0.13 2.21 7.91 -2.39 -0.02 2.19 16 29 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.03 1.10 5.33 -2.39 -0.01 1.08 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.28 7.23 -2.39 -0.02 1.26 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 0.83 7.57 -2.39 -0.02 0.81 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.36 4.74 8.85 -89.69 -0.79 3.94 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.03 0.53 8.06 -2.39 -0.02 0.51 16 39 H 0.03 1.04 6.21 -2.39 -0.01 1.02 16 40 H 0.06 1.60 7.45 -2.38 -0.02 1.59 16 Total: -1.00 -68.09 314.10 -3.34 -71.44 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.55 Total: 18.65 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.48 Total: 0.42 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -9.27 Total: -112.92 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.09 -3.34 -71.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061274818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.262 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds