Wall clock time and date at job start Mon Mar 30 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46776 * 269.99463 * 3 2 1 5 5 H 1.48495 * 109.47232 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.46976 * 149.99735 * 3 2 1 7 7 C 1.38951 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99557 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.47859 * 179.97438 * 16 15 14 18 18 C 1.48533 * 110.99670 * 52.60024 * 17 16 15 19 19 C 1.54936 * 103.22827 * 159.72645 * 18 17 16 20 20 C 1.54602 * 102.91755 * 322.58844 * 19 18 17 21 21 C 1.47895 * 111.00585 * 169.99973 * 17 16 15 22 22 H 0.96996 * 120.00205 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 24 24 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 25 25 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 26 26 H 1.00908 * 110.99583 * 303.94914 * 13 12 10 27 27 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 28 28 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 29 29 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 30 30 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 31 31 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 32 32 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 33 33 H 1.09002 * 110.67270 * 278.16471 * 18 17 16 34 34 H 1.08998 * 110.66667 * 41.29259 * 18 17 16 35 35 H 1.09002 * 110.72666 * 204.23420 * 19 18 17 36 36 H 1.08998 * 110.72369 * 80.94172 * 19 18 17 37 37 H 1.09001 * 110.30688 * 263.03605 * 20 19 18 38 38 H 1.08996 * 110.30747 * 140.87557 * 20 19 18 39 39 H 1.08994 * 109.91810 * 333.51090 * 21 17 16 40 40 H 1.08999 * 109.91451 * 94.60787 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0505 -3.7554 0.0014 14 6 7.5189 -3.7946 0.0031 15 6 7.9903 -5.2501 0.0028 16 6 9.5197 -5.2910 0.0039 17 7 9.9724 -6.6885 0.0042 18 6 9.3359 -7.4543 -1.0979 19 6 10.2789 -8.6709 -1.2748 20 6 11.6798 -8.0585 -1.0456 21 6 11.4294 -6.7738 -0.2344 22 1 -0.4850 0.8400 -0.0004 23 1 3.8649 -0.3633 0.0014 24 1 5.9234 -1.8570 0.8927 25 1 5.9248 -1.8562 -0.8873 26 1 5.6744 -4.2724 0.7821 27 1 7.8969 -3.2897 -0.8859 28 1 7.8948 -3.2915 0.8940 29 1 7.6124 -5.7546 0.8920 30 1 7.6145 -5.7536 -0.8879 31 1 9.8973 -4.7866 -0.8855 32 1 9.8959 -4.7875 0.8945 33 1 8.3360 -7.7810 -0.8121 34 1 9.3011 -6.8588 -2.0101 35 1 10.1966 -9.0795 -2.2820 36 1 10.0656 -9.4360 -0.5284 37 1 12.1484 -7.8181 -2.0000 38 1 12.3059 -8.7478 -0.4790 39 1 11.7643 -5.9054 -0.8016 40 1 11.9593 -6.8227 0.7169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062072781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:31 Heat of formation + Delta-G solvation = -34.132318 kcal Electronic energy + Delta-G solvation = -18280.745646 eV Core-core repulsion = 15323.080769 eV Total energy + Delta-G solvation = -2957.664876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.28330 -38.45194 -36.12484 -34.00221 -33.27623 -31.64749 -30.19866 -29.10497 -26.88936 -24.58704 -23.14769 -22.01749 -21.04389 -20.52797 -19.33132 -18.29091 -16.46396 -16.35632 -15.93051 -15.71259 -14.99318 -14.76021 -14.44302 -14.06880 -13.71269 -13.49805 -13.20361 -12.93061 -12.62749 -12.39597 -12.24381 -11.91231 -11.71406 -11.62912 -11.45548 -11.23838 -11.15608 -11.13568 -10.87721 -10.72233 -10.58465 -9.96216 -9.55946 -8.67846 -8.56738 -8.17697 -8.10699 -6.29701 -3.81035 3.03410 3.07883 3.15748 3.66852 3.76218 4.10813 4.15548 4.38466 4.43541 4.65345 4.82413 4.93925 5.00180 5.08292 5.19898 5.22752 5.24722 5.32042 5.41612 5.47891 5.53304 5.55908 5.62696 5.66864 5.70195 5.80945 5.84261 5.88337 5.94876 6.08655 6.16836 6.63128 6.78899 7.14462 7.59639 7.62158 8.16183 8.61562 8.96551 9.44030 9.84686 10.83492 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.059524 B = 0.002839 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.288994 B = 9860.350741 C =10195.592134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.061 3.939 15 C -0.118 4.118 16 C 0.049 3.951 17 N -0.519 5.519 18 C 0.032 3.968 19 C -0.125 4.125 20 C -0.132 4.132 21 C 0.034 3.966 22 H 0.273 0.727 23 H 0.370 0.630 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.351 0.649 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.113 -9.124 -1.076 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.069 4.069 15 C -0.156 4.156 16 C -0.079 4.079 17 N -0.243 5.243 18 C -0.095 4.095 19 C -0.164 4.164 20 C -0.170 4.170 21 C -0.094 4.094 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.170 0.830 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.294 -9.984 -1.242 25.374 hybrid contribution 1.001 2.208 0.127 2.428 sum 24.295 -7.776 -1.115 25.533 Atomic orbital electron populations 1.69620 1.05633 1.27473 1.49470 1.25043 0.95504 0.97979 0.97697 0.86662 0.79745 0.84028 0.78888 1.19610 1.20196 1.19533 1.19437 0.79262 0.96641 1.47998 0.86282 1.42211 1.07535 1.06166 1.67199 1.19728 0.88234 0.84550 0.83902 1.90563 1.69454 1.30956 1.53622 1.21704 0.94975 0.90587 1.01224 1.60060 1.06065 1.12539 1.51547 1.21907 0.88458 0.96326 1.00208 1.21598 0.93634 0.96693 1.03635 1.22269 0.95976 0.88849 1.00847 1.64803 1.04336 1.11779 1.43381 1.23273 0.99089 0.94352 0.92818 1.22500 0.94248 0.97793 1.01813 1.22399 0.97792 0.96887 0.99907 1.22871 0.89562 0.97159 0.99782 0.91629 0.79692 0.93787 0.89552 0.82958 0.91335 0.95525 0.91031 0.90757 0.94635 0.90713 0.89544 0.93559 0.91079 0.90713 0.91625 0.91072 0.93868 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.50 0.77 -25.22 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.53 27.74 -169.99 -4.72 14.82 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.45 6.52 56.52 0.37 -5.09 16 7 C -0.30 -8.74 10.16 -14.94 -0.15 -8.89 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.34 5.09 -10.97 -0.06 -14.40 16 10 C 0.45 10.46 7.82 -10.99 -0.09 10.37 16 11 O -0.56 -15.49 15.78 5.55 0.09 -15.40 16 12 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 13 N -0.67 -10.73 6.13 -115.06 -0.70 -11.43 16 14 C 0.06 0.73 5.68 -3.83 -0.02 0.71 16 15 C -0.12 -1.28 5.13 -26.74 -0.14 -1.42 16 16 C 0.05 0.47 5.03 -3.83 -0.02 0.45 16 17 N -0.52 -5.04 5.40 -230.47 -1.24 -6.28 16 18 C 0.03 0.29 5.10 -1.90 -0.01 0.28 16 19 C -0.13 -0.93 7.06 -24.87 -0.18 -1.11 16 20 C -0.13 -0.90 6.93 -25.37 -0.18 -1.08 16 21 C 0.03 0.28 6.69 -2.76 -0.02 0.26 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.87 6.79 -51.93 -0.35 0.52 16 31 H 0.04 0.33 7.81 -51.93 -0.41 -0.08 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.82 7.67 -51.93 -0.40 0.43 16 34 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -32.42 323.38 -8.64 -41.07 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.74 Total: 10.59 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.92 Total: 1.39 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -1.23 Total: -57.34 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.72 Total: 14.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.42 -8.64 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds