Wall clock time and date at job start Mon Mar 30 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46842 * 110.99891 * 66.04853 * 10 9 7 12 12 C 1.53035 * 109.52757 * 185.84041 * 11 10 9 13 13 C 1.53127 * 109.27841 * 300.82574 * 12 11 10 14 14 C 1.53116 * 109.16269 * 57.64668 * 13 12 11 15 15 H 1.09003 * 109.50427 * 62.32789 * 14 13 12 16 16 C 1.50696 * 109.50478 * 182.40677 * 14 13 12 17 17 O 1.21281 * 119.99905 * 120.00026 * 16 14 13 18 18 N 1.34775 * 120.00210 * 300.00284 * 16 14 13 19 19 C 1.46497 * 120.00039 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46850 * 180.02562 * 19 18 16 21 21 N 1.46900 * 109.46947 * 180.02562 * 20 19 18 22 22 C 1.46845 * 111.00078 * 190.25769 * 10 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09003 * 109.46684 * 305.85985 * 11 10 9 27 27 H 1.09003 * 109.46311 * 65.83230 * 11 10 9 28 28 H 1.08999 * 109.50049 * 60.75700 * 12 11 10 29 29 H 1.08993 * 109.50902 * 180.84461 * 12 11 10 30 30 H 1.08997 * 109.52540 * 177.55741 * 13 12 11 31 31 H 1.09003 * 109.51448 * 297.68233 * 13 12 11 32 32 H 0.96999 * 119.99945 * 359.97438 * 18 16 14 33 33 H 1.09005 * 109.47387 * 299.99819 * 19 18 16 34 34 H 1.08998 * 109.47054 * 60.00127 * 19 18 16 35 35 H 1.08997 * 109.47025 * 299.99361 * 20 19 18 36 36 H 1.08998 * 109.47327 * 60.00124 * 20 19 18 37 37 H 1.00904 * 111.00260 * 56.04272 * 21 20 19 38 38 H 1.00903 * 111.00355 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.46662 * 294.17949 * 22 10 9 40 40 H 1.09005 * 109.46031 * 54.14770 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9709 -3.6483 1.2632 12 6 4.0512 -4.7287 1.1749 13 6 3.3890 -6.0863 0.9237 14 6 2.5595 -6.0110 -0.3611 15 1 3.2154 -5.8009 -1.2060 16 6 1.8569 -7.3253 -0.5842 17 8 0.6458 -7.3644 -0.6358 18 7 2.5743 -8.4573 -0.7264 19 6 1.8913 -9.7351 -0.9427 20 6 2.9285 -10.8527 -1.0701 21 7 2.2436 -12.1339 -1.2876 22 6 1.5225 -4.8933 -0.2281 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 3.4400 -2.6783 1.4278 27 1 2.3001 -3.8726 2.0926 28 1 4.7304 -4.4978 0.3542 29 1 4.6091 -4.7628 2.1105 30 1 4.1573 -6.8521 0.8169 31 1 2.7402 -6.3359 1.7633 32 1 3.5430 -8.4260 -0.6854 33 1 1.2348 -9.9439 -0.0979 34 1 1.3007 -9.6811 -1.8572 35 1 3.5852 -10.6443 -1.9147 36 1 3.5188 -10.9065 -0.1554 37 1 1.6394 -12.0886 -2.0945 38 1 2.9076 -12.8886 -1.3755 39 1 0.8584 -5.1117 0.6082 40 1 0.9396 -4.8276 -1.1468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063180062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:14 Heat of formation + Delta-G solvation = -47.960598 kcal Electronic energy + Delta-G solvation = -19128.266872 eV Core-core repulsion = 16170.002356 eV Total energy + Delta-G solvation = -2958.264516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05359 -37.78298 -36.19326 -33.92487 -33.38939 -31.87223 -30.66182 -27.96488 -26.86513 -24.09417 -23.28987 -22.20208 -21.53232 -20.22746 -19.19777 -17.11241 -16.64920 -16.24306 -16.05980 -15.46976 -14.75688 -14.65194 -14.33825 -14.15693 -13.89669 -13.70194 -13.35800 -12.87169 -12.64709 -12.29979 -12.13260 -11.88949 -11.76433 -11.19274 -11.02687 -10.81385 -10.64320 -10.44413 -10.35185 -10.11940 -9.65983 -9.56672 -9.23812 -9.16630 -9.11278 -8.39842 -7.19868 -5.98623 -4.00449 2.74164 3.02594 3.35332 3.39493 3.42053 4.25564 4.44589 4.50717 4.69034 4.79569 4.93098 5.03404 5.07253 5.24005 5.36168 5.46413 5.57027 5.59165 5.72390 5.79414 5.89710 6.12440 6.15283 6.23142 6.29581 6.36856 6.56609 6.59674 6.70940 6.75023 6.90808 7.35952 7.39855 7.44388 7.82989 8.13577 8.25090 8.27497 8.59029 9.06871 9.63387 11.12248 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.003763 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.477886 B = 7440.035415 C = 7805.538420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.106 4.106 14 C -0.102 4.102 15 H 0.104 0.896 16 C 0.521 3.479 17 O -0.535 6.535 18 N -0.735 5.735 19 C 0.119 3.881 20 C 0.051 3.949 21 N -0.848 5.848 22 C 0.077 3.923 23 H 0.262 0.738 24 H -0.009 1.009 25 H 0.031 0.969 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.344 0.656 38 H 0.347 0.653 39 H 0.030 0.970 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -19.890 -1.072 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.262 5.262 11 C -0.068 4.068 12 C -0.153 4.153 13 C -0.144 4.144 14 C -0.123 4.123 15 H 0.122 0.878 16 C 0.307 3.693 17 O -0.410 6.410 18 N -0.389 5.389 19 C -0.006 4.006 20 C -0.080 4.080 21 N -0.378 5.378 22 C -0.052 4.052 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.048 0.952 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.495 -19.579 -0.775 21.356 hybrid contribution 0.772 0.711 -0.292 1.089 sum 9.266 -18.868 -1.067 21.048 Atomic orbital electron populations 1.69956 1.06066 1.26862 1.50878 1.24999 0.94857 0.99289 0.95519 0.86561 0.79413 0.82819 0.78582 1.20183 1.21394 1.20318 1.21118 0.93419 0.89916 1.50173 0.91884 1.19697 0.90012 0.87080 0.96260 1.62022 1.28222 1.02469 1.33500 1.21977 0.94972 0.99044 0.90806 1.21627 0.98385 0.93896 1.01434 1.21540 0.98292 0.98414 0.96189 1.21380 0.98927 0.91605 1.00431 0.87827 1.20896 0.87771 0.85450 0.75154 1.90708 1.14243 1.86784 1.49261 1.45929 1.10329 1.07118 1.75563 1.21208 0.94986 0.81908 1.02456 1.21925 0.95519 0.89471 1.01094 1.58546 1.25841 1.04935 1.48516 1.21725 0.93366 0.88764 1.01352 0.92865 0.99070 0.95101 0.89667 0.96240 0.91165 0.91957 0.92206 0.92001 0.76671 0.90726 0.91784 0.94830 0.90325 0.84315 0.84042 0.95212 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.39 8.43 -34.44 -0.29 -14.68 16 8 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16 9 C 0.19 5.22 4.72 -4.97 -0.02 5.20 16 10 N -0.54 -11.80 4.65 -236.11 -1.10 -12.90 16 11 C 0.06 1.16 5.30 -3.84 -0.02 1.14 16 12 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 13 C -0.11 -1.36 5.16 -26.61 -0.14 -1.49 16 14 C -0.10 -1.51 2.69 -91.69 -0.25 -1.75 16 15 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 16 C 0.52 7.67 7.16 -10.99 -0.08 7.59 16 17 O -0.53 -10.18 15.98 5.56 0.09 -10.09 16 18 N -0.74 -7.65 5.46 -60.30 -0.33 -7.98 16 19 C 0.12 1.16 5.93 -4.04 -0.02 1.13 16 20 C 0.05 0.34 6.90 -3.82 -0.03 0.31 16 21 N -0.85 -5.33 9.62 -10.37 -0.10 -5.43 16 22 C 0.08 1.51 4.03 -3.83 -0.02 1.50 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.03 0.89 7.98 -51.93 -0.41 0.48 16 26 H 0.08 1.77 6.72 -51.93 -0.35 1.42 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 2.98 7.94 -40.82 -0.32 2.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.34 1.88 8.99 -39.29 -0.35 1.53 16 38 H 0.35 1.51 9.08 -39.29 -0.36 1.15 16 39 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.07 1.55 7.99 -51.93 -0.41 1.13 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -33.32 323.00 -8.74 -42.07 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.76 Total: 0.56 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.12 Total: -1.38 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.79 Total: -52.77 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.32 -8.74 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063180062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.895 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds