Wall clock time and date at job start Mon Mar 30 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47480 * 269.99942 * 3 2 1 5 5 H 1.48502 * 109.47337 * 30.00341 * 3 2 1 6 6 H 1.48508 * 109.47239 * 149.99799 * 3 2 1 7 7 C 1.38951 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99684 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00124 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00201 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47601 * 173.73174 * 12 10 9 14 14 C 1.46842 * 111.00393 * 169.40084 * 13 12 10 15 15 C 1.53034 * 109.52656 * 185.84074 * 14 13 12 16 16 C 1.53120 * 109.27740 * 300.81927 * 15 14 13 17 17 C 1.53116 * 109.16153 * 57.65336 * 16 15 14 18 18 H 1.08998 * 109.53755 * 62.30938 * 17 16 15 19 19 C 1.53002 * 109.50490 * 182.40797 * 17 16 15 20 20 C 1.53002 * 109.46787 * 294.80362 * 19 17 16 21 21 N 1.46907 * 109.46915 * 179.97438 * 20 19 17 22 22 C 1.46848 * 111.00032 * 293.60937 * 13 12 10 23 23 H 0.97002 * 119.99731 * 359.97438 * 1 2 3 24 24 H 0.96992 * 120.00592 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47209 * 293.73311 * 12 10 9 26 26 H 1.09005 * 109.47439 * 53.72623 * 12 10 9 27 27 H 1.09000 * 109.45984 * 305.85365 * 14 13 12 28 28 H 1.08999 * 109.46611 * 65.82197 * 14 13 12 29 29 H 1.09005 * 109.50887 * 180.87548 * 15 14 13 30 30 H 1.09005 * 109.50842 * 60.75665 * 15 14 13 31 31 H 1.08997 * 109.52090 * 297.74759 * 16 15 14 32 32 H 1.09005 * 109.52387 * 177.56031 * 16 15 14 33 33 H 1.08999 * 109.46861 * 54.79757 * 19 17 16 34 34 H 1.08993 * 109.47406 * 174.80248 * 19 17 16 35 35 H 1.08999 * 109.46926 * 299.99355 * 20 19 17 36 36 H 1.09002 * 109.47447 * 59.99874 * 20 19 17 37 37 H 1.00899 * 110.99465 * 179.97438 * 21 20 19 38 38 H 1.00897 * 110.99715 * 303.95468 * 21 20 19 39 39 H 1.09004 * 109.46056 * 294.17411 * 22 13 12 40 40 H 1.09005 * 109.46287 * 54.14994 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2436 -4.8629 -0.0044 13 7 2.1909 -5.9752 -0.1565 14 6 1.5321 -7.2647 0.0873 15 6 2.5751 -8.3844 0.0641 16 6 3.2735 -8.3965 -1.2985 17 6 3.9101 -7.0267 -1.5491 18 1 4.6680 -6.8326 -0.7901 19 6 4.5590 -7.0108 -2.9346 20 6 5.7223 -8.0042 -2.9644 21 7 6.3450 -7.9893 -4.2949 22 6 2.8284 -5.9464 -1.4790 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3906 -0.0024 25 1 0.7033 -4.9719 0.9361 26 1 0.5356 -4.8727 -0.8332 27 1 1.0430 -7.2442 1.0612 28 1 0.7883 -7.4451 -0.6887 29 1 2.0836 -9.3432 0.2297 30 1 3.3116 -8.2121 0.8490 31 1 2.5436 -8.6075 -2.0800 32 1 4.0472 -9.1644 -1.3045 33 1 3.8206 -7.2935 -3.6849 34 1 4.9310 -6.0092 -3.1501 35 1 6.4607 -7.7215 -2.2141 36 1 5.3504 -9.0059 -2.7488 37 1 7.1169 -8.6374 -4.3400 38 1 5.6653 -8.1853 -5.0143 39 1 2.0785 -6.1330 -2.2478 40 1 3.2810 -4.9684 -1.6429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069724211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:25 Heat of formation + Delta-G solvation = -49.846962 kcal Electronic energy + Delta-G solvation = -19354.737602 eV Core-core repulsion = 16396.391287 eV Total energy + Delta-G solvation = -2958.346315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34415 -37.75127 -35.72810 -33.92096 -33.04722 -31.47921 -31.15897 -27.66994 -27.02067 -24.66440 -23.09502 -22.59606 -20.82720 -19.53879 -19.08461 -17.79790 -16.02943 -15.93634 -15.50202 -15.15526 -14.97424 -14.53442 -14.23109 -13.97874 -13.75367 -13.39802 -13.25218 -13.13435 -12.56640 -12.06772 -11.82353 -11.73140 -11.47515 -11.22674 -11.16230 -10.95493 -10.85510 -10.50067 -10.36056 -10.19858 -10.13942 -10.04564 -9.41915 -8.81494 -8.36153 -7.91993 -7.77470 -6.37440 -3.77916 3.21050 3.29335 3.35588 3.96691 4.01775 4.25670 4.46575 4.81646 4.89624 4.96970 5.06599 5.19833 5.26639 5.29493 5.44093 5.53906 5.65176 5.68529 5.71161 5.75230 5.87039 5.89674 5.94751 6.02746 6.06608 6.16172 6.25969 6.32898 6.35624 6.57993 6.62861 6.96895 7.25279 7.39655 7.51840 7.59514 8.11551 8.67248 9.23049 9.59891 10.12238 10.80523 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.004614 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.621281 B = 6066.443372 C = 6945.335614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.080 4.080 18 H 0.081 0.919 19 C -0.112 4.112 20 C 0.062 3.938 21 N -0.854 5.854 22 C 0.063 3.937 23 H 0.271 0.729 24 H 0.391 0.609 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.338 0.662 38 H 0.338 0.662 39 H 0.020 0.980 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -16.971 -4.182 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.099 4.099 18 H 0.100 0.900 19 C -0.150 4.150 20 C -0.069 4.069 21 N -0.383 5.383 22 C -0.065 4.065 23 H 0.080 0.920 24 H 0.224 0.776 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.038 0.962 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.072 -15.977 -3.652 16.888 hybrid contribution -1.306 -0.235 -0.624 1.466 sum 2.766 -16.212 -4.276 16.993 Atomic orbital electron populations 1.69617 1.05935 1.28057 1.50908 1.25246 0.95615 0.99667 0.97452 0.85868 0.79256 0.80881 0.78352 1.20455 1.20976 1.19409 1.19701 0.93353 0.82243 1.47381 0.87934 1.41882 1.09153 1.04599 1.64720 1.19774 0.88460 0.84535 0.84313 1.90507 1.13629 1.86940 1.54757 1.21844 0.93734 0.91384 1.01527 1.61459 1.30900 1.00911 1.30645 1.22098 0.95212 0.89595 1.00438 1.21558 0.98561 0.97141 0.97993 1.21699 0.99298 0.97247 0.97101 1.21112 0.97785 0.94158 0.96839 0.90013 1.21560 0.96326 1.00429 0.96717 1.21857 0.96655 0.97451 0.90898 1.58690 1.14257 1.60049 1.05263 1.22185 0.95489 1.00942 0.87874 0.91951 0.77558 0.89378 0.93756 0.91012 0.95514 0.91999 0.91024 0.92688 0.92185 0.92565 0.90714 0.90980 0.95577 0.84969 0.84973 0.96196 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 10 C 0.44 10.69 7.31 -10.99 -0.08 10.61 16 11 O -0.57 -15.74 14.28 5.55 0.08 -15.66 16 12 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 13 N -0.51 -8.90 4.35 -236.12 -1.03 -9.93 16 14 C 0.05 0.74 5.46 -3.84 -0.02 0.72 16 15 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 16 C -0.12 -1.31 4.98 -26.61 -0.13 -1.44 16 17 C -0.08 -1.09 2.35 -90.54 -0.21 -1.30 16 18 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 19 C -0.11 -1.38 4.95 -26.73 -0.13 -1.51 16 20 C 0.06 0.65 6.55 -3.82 -0.02 0.62 16 21 N -0.85 -8.23 9.62 -10.36 -0.10 -8.33 16 22 C 0.06 1.06 4.40 -3.83 -0.02 1.04 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 25 H 0.09 1.48 7.98 -51.93 -0.41 1.07 16 26 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.24 6.63 -51.93 -0.34 -0.10 16 37 H 0.34 2.59 9.08 -39.29 -0.36 2.24 16 38 H 0.34 2.83 8.99 -39.29 -0.35 2.47 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 2.00 6.06 -51.93 -0.31 1.68 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -31.14 318.38 -8.26 -39.40 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.61 Total: 12.19 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.05 Total: 0.04 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.46 Total: -57.07 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.14 -8.26 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.448 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds